Wall clock time and date at job start Mon Mar 30 2020 06:20:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09009 * 109.47106 * 2 1 4 4 C 1.50698 * 109.47066 * 240.00078 * 2 1 3 5 5 H 1.07999 * 119.99917 * 245.44773 * 4 2 1 6 6 C 1.37874 * 120.00198 * 65.45053 * 4 2 1 7 7 N 1.31522 * 120.00084 * 9.69999 * 6 4 2 8 8 Si 1.86797 * 120.00226 * 189.70450 * 6 4 2 9 9 H 1.48504 * 109.47242 * 84.99141 * 8 6 4 10 10 H 1.48504 * 109.47068 * 204.99169 * 8 6 4 11 11 H 1.48501 * 109.47019 * 324.99495 * 8 6 4 12 12 C 1.50693 * 109.47056 * 119.99856 * 2 1 3 13 13 C 1.34211 * 125.04131 * 84.98108 * 12 2 1 14 14 C 1.46511 * 106.99724 * 180.02562 * 13 12 2 15 15 C 1.40628 * 106.06479 * 359.97438 * 14 13 12 16 16 C 1.39128 * 119.43780 * 180.02562 * 15 14 13 17 17 C 1.37744 * 119.96999 * 0.02562 * 16 15 14 18 18 C 1.38797 * 120.68859 * 359.95584 * 17 16 15 19 19 C 1.37861 * 120.35823 * 0.04735 * 18 17 16 20 20 F 1.35101 * 120.20354 * 179.97438 * 19 18 17 21 21 N 1.36890 * 125.04499 * 265.00087 * 12 2 1 22 22 C 1.46504 * 125.05738 * 0.24361 * 21 12 2 23 23 H 1.09003 * 109.47040 * 303.50533 * 1 2 3 24 24 H 1.09008 * 109.47492 * 63.49824 * 1 2 3 25 25 H 1.08996 * 109.47616 * 183.50460 * 1 2 3 26 26 H 0.96999 * 119.99998 * 179.97438 * 7 6 4 27 27 H 1.08002 * 126.50287 * 0.03308 * 13 12 2 28 28 H 1.08002 * 120.01539 * 179.97438 * 16 15 14 29 29 H 1.07998 * 119.65799 * 179.97438 * 17 16 15 30 30 H 1.08002 * 119.82361 * 180.02562 * 18 17 16 31 31 H 1.09002 * 109.47119 * 269.71919 * 22 21 12 32 32 H 1.08998 * 109.47695 * 29.72276 * 22 21 12 33 33 H 1.09001 * 109.46812 * 149.72683 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.5787 -1.6369 -1.1338 6 6 1.7944 -0.1775 -2.4796 7 7 1.3015 1.0365 -2.5936 8 14 2.1719 -1.1797 -4.0100 9 1 1.0177 -2.0604 -4.3223 10 1 2.4194 -0.2641 -5.1528 11 1 3.3789 -2.0115 -3.7718 12 6 2.0323 -0.7103 1.2304 13 6 2.1985 -2.0376 1.3401 14 6 2.6997 -2.2962 2.6923 15 6 2.7996 -1.0403 3.3171 16 6 3.2553 -0.9637 4.6294 17 6 3.6043 -2.1124 5.3047 18 6 3.5060 -3.3530 4.6902 19 6 3.0572 -3.4532 3.3905 20 9 2.9633 -4.6623 2.7952 21 7 2.3863 -0.0977 2.4023 22 6 2.3285 1.3454 2.6483 23 1 -0.3633 0.5673 0.8569 24 1 -0.3634 0.4586 -0.9197 25 1 -0.3634 -1.0257 0.0628 26 1 1.1344 1.4116 -3.4725 27 1 2.0005 -2.7752 0.5764 28 1 3.3361 -0.0040 5.1181 29 1 3.9577 -2.0471 6.3231 30 1 3.7830 -4.2447 5.2329 31 1 3.2801 1.7995 2.3720 32 1 1.5295 1.7842 2.0508 33 1 2.1331 1.5261 3.7053 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259545895.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:20:30 Heat of formation + Delta-G solvation = -11.592766 kcal Electronic energy + Delta-G solvation = -17522.419074 eV Core-core repulsion = 14655.057538 eV Total energy + Delta-G solvation = -2867.361536 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 247.107 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -49.75848 -42.23536 -38.11281 -36.00816 -33.70794 -32.82557 -30.76578 -29.12251 -27.34056 -26.93018 -24.40424 -22.81657 -22.25042 -20.54821 -18.46703 -18.17666 -17.53802 -16.74195 -16.68533 -16.48736 -16.21067 -15.96276 -15.41601 -14.80477 -14.21693 -14.00941 -13.85844 -13.67556 -13.46082 -13.17507 -13.05180 -12.79375 -12.50785 -12.40843 -12.38611 -12.13455 -11.82209 -11.57408 -11.08967 -10.51697 -10.38211 -9.06104 -8.42822 -8.20430 -6.27715 0.08888 0.59642 1.39857 1.41643 1.50370 1.83622 1.94592 2.42327 2.82156 3.11846 3.41068 3.78461 3.94468 3.99974 4.22582 4.28404 4.43748 4.49381 4.64161 4.68386 4.75057 4.89040 4.97224 5.03346 5.10232 5.23975 5.35337 5.44003 5.53445 5.63903 5.79097 5.84129 5.99767 6.14333 6.41947 6.51033 6.77924 7.38872 8.88202 Molecular weight = 247.11amu Principal moments of inertia in cm(-1) A = 0.027158 B = 0.006870 C = 0.005806 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1030.765933 B = 4074.417916 C = 4821.531281 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C 0.099 3.901 3 H 0.025 0.975 4 C -0.529 4.529 5 H 0.052 0.948 6 C 0.024 3.976 7 N -0.913 5.913 8 Si 0.950 3.050 9 H -0.273 1.273 10 H -0.280 1.280 11 H -0.274 1.274 12 C 0.120 3.880 13 C -0.232 4.232 14 C -0.172 4.172 15 C 0.102 3.898 16 C -0.132 4.132 17 C -0.074 4.074 18 C -0.178 4.178 19 C 0.104 3.896 20 F -0.154 7.154 21 N -0.488 5.488 22 C 0.074 3.926 23 H 0.035 0.965 24 H 0.051 0.949 25 H 0.032 0.968 26 H 0.265 0.735 27 H 0.125 0.875 28 H 0.156 0.844 29 H 0.178 0.822 30 H 0.158 0.842 31 H 0.074 0.926 32 H 0.078 0.922 33 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.036 -1.322 15.444 15.795 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.080 3.920 3 H 0.043 0.957 4 C -0.567 4.567 5 H 0.071 0.929 6 C -0.176 4.176 7 N -0.551 5.551 8 Si 0.775 3.225 9 H -0.198 1.198 10 H -0.205 1.205 11 H -0.199 1.199 12 C 0.013 3.987 13 C -0.256 4.256 14 C -0.177 4.177 15 C -0.005 4.005 16 C -0.153 4.153 17 C -0.093 4.093 18 C -0.197 4.197 19 C 0.084 3.916 20 F -0.133 7.133 21 N -0.171 5.171 22 C -0.066 4.066 23 H 0.054 0.946 24 H 0.070 0.930 25 H 0.051 0.949 26 H 0.074 0.926 27 H 0.143 0.857 28 H 0.173 0.827 29 H 0.195 0.805 30 H 0.175 0.825 31 H 0.092 0.908 32 H 0.097 0.903 33 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 2.949 -0.857 15.306 15.611 hybrid contribution -0.037 -0.713 -1.693 1.838 sum 2.913 -1.570 13.613 14.009 Atomic orbital electron populations 1.21551 0.96562 0.99194 0.99820 1.17403 0.93021 0.94614 0.86993 0.95651 1.21317 1.36134 1.08233 0.91052 0.92939 1.25587 0.95010 0.95503 1.01500 1.70032 1.45597 1.14828 1.24687 0.85692 0.78697 0.78846 0.79222 1.19839 1.20485 1.19929 1.21106 0.97431 0.92549 0.87649 1.21270 1.13337 0.95220 0.95784 1.19464 1.08763 0.93430 0.96062 1.18427 1.02213 0.86953 0.92949 1.20459 1.03520 1.01332 0.89984 1.21026 0.97965 0.89311 1.00978 1.21150 1.05320 1.01134 0.92144 1.17489 1.03311 0.78007 0.92763 1.91402 1.94238 1.43050 1.84628 1.44149 1.55506 1.07372 1.10089 1.22139 1.03728 0.76226 1.04517 0.94603 0.93011 0.94899 0.92602 0.85745 0.82676 0.80510 0.82483 0.90756 0.90277 0.86957 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -5.32 9.05 71.98 0.65 -4.67 16 2 C 0.10 4.95 2.10 -12.29 -0.03 4.92 16 3 H 0.03 1.34 7.28 -2.38 -0.02 1.33 16 4 C -0.53 -29.34 8.19 25.60 0.21 -29.13 16 5 H 0.05 2.98 6.63 -2.91 -0.02 2.96 16 6 C 0.02 1.31 5.17 84.65 0.44 1.74 16 7 N -0.91 -51.34 12.17 21.45 0.26 -51.08 16 8 Si 0.95 43.82 29.55 68.60 2.03 45.85 16 9 H -0.27 -12.30 7.11 99.48 0.71 -11.59 16 10 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 11 H -0.27 -12.62 7.11 99.48 0.71 -11.91 16 12 C 0.12 5.44 5.77 40.85 0.24 5.67 16 13 C -0.23 -10.78 9.92 23.51 0.23 -10.55 16 14 C -0.17 -6.92 6.36 -20.16 -0.13 -7.05 16 15 C 0.10 3.53 6.81 39.02 0.27 3.80 16 16 C -0.13 -3.25 9.95 22.37 0.22 -3.03 16 17 C -0.07 -1.53 10.01 22.29 0.22 -1.31 16 18 C -0.18 -4.55 10.01 22.31 0.22 -4.33 16 19 C 0.10 3.67 7.34 22.55 0.17 3.83 16 20 F -0.15 -5.76 17.28 44.97 0.78 -4.99 16 21 N -0.49 -18.13 3.18 -524.69 -1.67 -19.80 16 22 C 0.07 2.04 10.57 127.77 1.35 3.39 16 23 H 0.03 1.46 8.14 -2.39 -0.02 1.44 16 24 H 0.05 2.62 6.84 -2.38 -0.02 2.61 16 25 H 0.03 1.51 8.14 -2.39 -0.02 1.49 16 26 H 0.26 14.14 8.31 -92.71 -0.77 13.37 16 27 H 0.12 6.08 7.47 -2.91 -0.02 6.05 16 28 H 0.16 2.66 8.06 -2.91 -0.02 2.64 16 29 H 0.18 2.01 8.06 -2.91 -0.02 1.98 16 30 H 0.16 3.03 8.06 -2.91 -0.02 3.01 16 31 H 0.07 1.92 8.14 -2.39 -0.02 1.90 16 32 H 0.08 2.30 7.39 -2.39 -0.02 2.28 16 33 H 0.11 2.16 8.10 -2.39 -0.02 2.14 16 Total: -1.00 -65.38 285.35 6.57 -58.81 By element: Atomic # 1 Polarization: 6.81 SS G_CDS: 1.11 Total: 7.92 kcal Atomic # 6 Polarization: -40.77 SS G_CDS: 4.06 Total: -36.71 kcal Atomic # 7 Polarization: -69.47 SS G_CDS: -1.41 Total: -70.88 kcal Atomic # 9 Polarization: -5.76 SS G_CDS: 0.78 Total: -4.99 kcal Atomic # 14 Polarization: 43.82 SS G_CDS: 2.03 Total: 45.85 kcal Total: -65.38 6.57 -58.81 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259545895.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.218 kcal (2) G-P(sol) polarization free energy of solvation -65.380 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.163 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.570 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.810 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.593 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds