Wall clock time and date at job start Mon Mar 30 2020 06:20:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.47595 * 2 1 4 4 C 1.50703 * 109.47092 * 119.99852 * 2 1 3 5 5 H 1.07995 * 120.00107 * 119.99343 * 4 2 1 6 6 C 1.37883 * 119.99894 * 299.99975 * 4 2 1 7 7 N 1.31517 * 119.99856 * 359.97438 * 6 4 2 8 8 Si 1.86793 * 119.99918 * 179.97438 * 6 4 2 9 9 H 1.48498 * 109.47279 * 60.00088 * 8 6 4 10 10 H 1.48501 * 109.47221 * 180.02562 * 8 6 4 11 11 H 1.48502 * 109.47419 * 300.00115 * 8 6 4 12 12 C 1.50704 * 109.47113 * 239.99531 * 2 1 3 13 13 C 1.34209 * 125.04017 * 275.00195 * 12 2 1 14 14 C 1.46505 * 106.99264 * 179.97438 * 13 12 2 15 15 C 1.40629 * 106.07045 * 0.02562 * 14 13 12 16 16 C 1.39123 * 119.44755 * 179.97438 * 15 14 13 17 17 C 1.37748 * 119.96111 * 0.02562 * 16 15 14 18 18 C 1.38795 * 120.69548 * 0.02562 * 17 16 15 19 19 C 1.37869 * 120.35132 * 359.97438 * 18 17 16 20 20 F 1.35100 * 120.19478 * 180.02562 * 19 18 17 21 21 N 1.36885 * 125.04127 * 95.00631 * 12 2 1 22 22 C 1.46502 * 125.06093 * 0.02562 * 21 12 2 23 23 H 1.09004 * 109.46740 * 60.00187 * 1 2 3 24 24 H 1.08998 * 109.47147 * 180.02562 * 1 2 3 25 25 H 1.09000 * 109.47155 * 300.00527 * 1 2 3 26 26 H 0.96998 * 119.99774 * 179.97438 * 7 6 4 27 27 H 1.07999 * 126.50501 * 359.97438 * 13 12 2 28 28 H 1.07996 * 120.01567 * 180.02562 * 16 15 14 29 29 H 1.08007 * 119.65495 * 180.27479 * 17 16 15 30 30 H 1.08003 * 119.82257 * 179.97438 * 18 17 16 31 31 H 1.08996 * 109.47909 * 270.00887 * 22 21 12 32 32 H 1.09004 * 109.47267 * 30.00606 * 22 21 12 33 33 H 1.08999 * 109.47336 * 150.00070 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6531 -1.5885 1.1315 6 6 1.6992 -0.2393 2.4828 7 7 0.9435 0.8303 2.6034 8 14 2.3213 -1.1202 4.0080 9 1 3.8062 -1.1208 4.0083 10 1 1.8259 -0.4204 5.2205 11 1 1.8257 -2.5201 4.0079 12 6 2.0323 -0.7105 -1.2304 13 6 2.1989 -2.0377 -1.3398 14 6 2.6999 -2.2964 -2.6920 15 6 2.7995 -1.0406 -3.3171 16 6 3.2549 -0.9640 -4.6294 17 6 3.6031 -2.1129 -5.3049 18 6 3.5046 -3.3535 -4.6905 19 6 3.0559 -3.4535 -3.3907 20 9 2.9618 -4.6627 -2.7955 21 7 2.3865 -0.0979 -2.4022 22 6 2.3342 1.3456 -2.6465 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3633 0.5139 0.8899 26 1 0.7089 1.1615 3.4844 27 1 2.0011 -2.7752 -0.5760 28 1 3.3354 -0.0044 -5.1182 29 1 3.9603 -2.0473 -6.3221 30 1 3.7810 -4.2453 -5.2335 31 1 1.3559 1.6112 -3.0471 32 1 2.5003 1.8788 -1.7104 33 1 3.1075 1.6211 -3.3636 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259545899.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:20:33 Heat of formation + Delta-G solvation = -9.766542 kcal Electronic energy + Delta-G solvation = -17529.267912 eV Core-core repulsion = 14661.985567 eV Total energy + Delta-G solvation = -2867.282345 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 247.107 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -49.76146 -42.23837 -38.11650 -36.04575 -33.70675 -32.75802 -30.76564 -29.09322 -27.38322 -26.92885 -24.37282 -22.81513 -22.25306 -20.53312 -18.46814 -18.17107 -17.55369 -16.76513 -16.67679 -16.51389 -16.21232 -15.97790 -15.42650 -14.81465 -14.21215 -13.99318 -13.84401 -13.64041 -13.40419 -13.18996 -12.94721 -12.84110 -12.46959 -12.41372 -12.36135 -12.09769 -11.83305 -11.66696 -11.03051 -10.52800 -10.37906 -9.06453 -8.42302 -8.16634 -6.28683 0.08642 0.59406 1.41079 1.42081 1.49718 1.83758 1.94076 2.42299 2.81885 3.13007 3.40907 3.78317 3.94424 3.99888 4.22920 4.29033 4.43192 4.49269 4.61945 4.70151 4.76085 4.89860 5.00283 5.07449 5.11588 5.24244 5.37237 5.44089 5.52977 5.65797 5.81436 5.89901 6.02192 6.16097 6.42141 6.50748 6.76724 7.39169 8.88790 Molecular weight = 247.11amu Principal moments of inertia in cm(-1) A = 0.027129 B = 0.006854 C = 0.005821 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1031.872899 B = 4084.251319 C = 4808.788579 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C 0.101 3.899 3 H 0.023 0.977 4 C -0.529 4.529 5 H 0.052 0.948 6 C 0.022 3.978 7 N -0.912 5.912 8 Si 0.953 3.047 9 H -0.274 1.274 10 H -0.278 1.278 11 H -0.275 1.275 12 C 0.120 3.880 13 C -0.233 4.233 14 C -0.172 4.172 15 C 0.102 3.898 16 C -0.132 4.132 17 C -0.074 4.074 18 C -0.177 4.177 19 C 0.103 3.897 20 F -0.155 7.155 21 N -0.488 5.488 22 C 0.073 3.927 23 H 0.029 0.971 24 H 0.024 0.976 25 H 0.070 0.930 26 H 0.265 0.735 27 H 0.123 0.877 28 H 0.156 0.844 29 H 0.178 0.822 30 H 0.158 0.842 31 H 0.081 0.919 32 H 0.076 0.924 33 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.061 -0.738 -15.263 15.811 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.081 3.919 3 H 0.041 0.959 4 C -0.567 4.567 5 H 0.070 0.930 6 C -0.178 4.178 7 N -0.551 5.551 8 Si 0.779 3.221 9 H -0.199 1.199 10 H -0.203 1.203 11 H -0.200 1.200 12 C 0.012 3.988 13 C -0.256 4.256 14 C -0.177 4.177 15 C -0.005 4.005 16 C -0.153 4.153 17 C -0.093 4.093 18 C -0.197 4.197 19 C 0.084 3.916 20 F -0.133 7.133 21 N -0.171 5.171 22 C -0.067 4.067 23 H 0.048 0.952 24 H 0.043 0.957 25 H 0.088 0.912 26 H 0.074 0.926 27 H 0.141 0.859 28 H 0.174 0.826 29 H 0.195 0.805 30 H 0.175 0.825 31 H 0.099 0.901 32 H 0.095 0.905 33 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 3.944 -0.289 -15.121 15.629 hybrid contribution 0.000 -0.729 1.641 1.796 sum 3.944 -1.018 -13.479 14.082 Atomic orbital electron populations 1.21589 0.96490 0.99218 1.00294 1.17414 0.93232 0.94255 0.86961 0.95932 1.21318 1.31711 1.12735 0.90950 0.93006 1.25603 0.95074 0.95641 1.01468 1.69953 1.37086 1.23631 1.24400 0.85678 0.78727 0.78797 0.78899 1.19947 1.20298 1.19995 1.21113 0.97363 0.92592 0.87707 1.21258 1.13368 0.95222 0.95800 1.19464 1.08769 0.93465 0.96035 1.18427 1.02211 0.86948 0.92964 1.20459 1.03513 1.01335 0.89949 1.21030 0.97966 0.89307 1.00985 1.21153 1.05306 1.01153 0.92115 1.17495 1.03339 0.77997 0.92775 1.91401 1.94239 1.43058 1.84641 1.44143 1.55493 1.07382 1.10075 1.22156 1.04451 0.76203 1.03902 0.95236 0.95674 0.91169 0.92589 0.85887 0.82640 0.80488 0.82474 0.90056 0.90530 0.87227 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.70 8.95 71.98 0.64 -5.05 16 2 C 0.10 5.05 2.45 -12.28 -0.03 5.02 16 3 H 0.02 1.18 6.78 -2.39 -0.02 1.17 16 4 C -0.53 -29.35 8.21 25.60 0.21 -29.14 16 5 H 0.05 2.94 6.75 -2.91 -0.02 2.92 16 6 C 0.02 1.18 5.30 84.66 0.45 1.63 16 7 N -0.91 -50.89 11.32 21.45 0.24 -50.65 16 8 Si 0.95 43.78 29.54 68.60 2.03 45.81 16 9 H -0.27 -12.42 7.11 99.48 0.71 -11.71 16 10 H -0.28 -12.28 7.11 99.48 0.71 -11.57 16 11 H -0.27 -12.51 7.11 99.48 0.71 -11.80 16 12 C 0.12 5.45 5.77 40.85 0.24 5.68 16 13 C -0.23 -10.89 9.90 23.51 0.23 -10.66 16 14 C -0.17 -6.96 6.36 -20.17 -0.13 -7.09 16 15 C 0.10 3.53 6.80 39.02 0.27 3.80 16 16 C -0.13 -3.24 9.95 22.37 0.22 -3.02 16 17 C -0.07 -1.54 10.01 22.29 0.22 -1.31 16 18 C -0.18 -4.56 10.01 22.32 0.22 -4.34 16 19 C 0.10 3.67 7.34 22.56 0.17 3.84 16 20 F -0.15 -5.81 17.28 44.97 0.78 -5.03 16 21 N -0.49 -18.13 3.18 -524.69 -1.67 -19.80 16 22 C 0.07 1.99 10.80 127.77 1.38 3.37 16 23 H 0.03 1.24 8.14 -2.39 -0.02 1.22 16 24 H 0.02 1.20 8.14 -2.39 -0.02 1.18 16 25 H 0.07 3.67 6.07 -2.39 -0.01 3.66 16 26 H 0.26 14.06 8.31 -92.71 -0.77 13.29 16 27 H 0.12 6.09 7.57 -2.91 -0.02 6.07 16 28 H 0.16 2.66 8.06 -2.91 -0.02 2.63 16 29 H 0.18 2.01 8.06 -2.91 -0.02 1.98 16 30 H 0.16 3.05 8.06 -2.91 -0.02 3.03 16 31 H 0.08 1.94 8.14 -2.39 -0.02 1.92 16 32 H 0.08 2.28 6.81 -2.38 -0.02 2.27 16 33 H 0.11 2.14 8.10 -2.39 -0.02 2.12 16 Total: -1.00 -65.15 283.46 6.58 -58.56 By element: Atomic # 1 Polarization: 7.26 SS G_CDS: 1.11 Total: 8.38 kcal Atomic # 6 Polarization: -41.36 SS G_CDS: 4.09 Total: -37.27 kcal Atomic # 7 Polarization: -69.02 SS G_CDS: -1.43 Total: -70.45 kcal Atomic # 9 Polarization: -5.81 SS G_CDS: 0.78 Total: -5.03 kcal Atomic # 14 Polarization: 43.78 SS G_CDS: 2.03 Total: 45.81 kcal Total: -65.15 6.58 -58.56 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259545899.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.797 kcal (2) G-P(sol) polarization free energy of solvation -65.147 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.351 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.584 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.563 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.767 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds