Wall clock time and date at job start Mon Mar 30 2020 06:18:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47455 * 2 1 4 4 C 1.50697 * 109.47273 * 239.99730 * 2 1 3 5 5 H 1.07997 * 120.00487 * 274.68052 * 4 2 1 6 6 C 1.37884 * 119.99579 * 94.67881 * 4 2 1 7 7 N 1.31517 * 119.99643 * 183.32815 * 6 4 2 8 8 Si 1.86797 * 120.00311 * 3.32786 * 6 4 2 9 9 H 1.48503 * 109.47020 * 84.70673 * 8 6 4 10 10 H 1.48494 * 109.47291 * 204.70710 * 8 6 4 11 11 H 1.48496 * 109.47082 * 324.71063 * 8 6 4 12 12 C 1.53009 * 109.47327 * 120.00179 * 2 1 3 13 13 C 1.50706 * 109.46830 * 294.99828 * 12 2 1 14 14 C 1.34237 * 126.49623 * 265.00296 * 13 12 2 15 15 N 1.36810 * 109.93294 * 180.02562 * 14 13 12 16 16 H 0.96994 * 125.07008 * 180.02562 * 15 14 13 17 17 C 1.37823 * 109.86277 * 359.97438 * 15 14 13 18 18 C 1.39090 * 133.39262 * 179.97438 * 17 15 14 19 19 C 1.37722 * 119.94793 * 180.02562 * 18 17 15 20 20 C 1.39032 * 120.64821 * 0.02562 * 19 18 17 21 21 F 1.35101 * 119.82929 * 179.97438 * 20 19 18 22 22 C 1.37792 * 120.33581 * 0.23626 * 20 19 18 23 23 C 1.39674 * 119.62775 * 359.49368 * 22 20 19 24 24 H 1.08993 * 109.47355 * 66.25595 * 1 2 3 25 25 H 1.08998 * 109.46999 * 186.25611 * 1 2 3 26 26 H 1.08998 * 109.47087 * 306.24949 * 1 2 3 27 27 H 0.97000 * 119.99786 * 179.97438 * 7 6 4 28 28 H 1.09001 * 109.47352 * 175.00262 * 12 2 1 29 29 H 1.08995 * 109.47272 * 54.99455 * 12 2 1 30 30 H 1.07999 * 125.03582 * 0.02562 * 14 13 12 31 31 H 1.07995 * 120.02782 * 0.05894 * 18 17 15 32 32 H 1.07998 * 119.66938 * 180.02562 * 19 18 17 33 33 H 1.07997 * 120.18302 * 179.74276 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.1404 -1.7850 -1.2273 6 6 2.3540 0.0115 -2.3602 7 7 2.7298 -0.6132 -3.4548 8 14 2.2559 1.8768 -2.3362 9 1 3.5193 2.4318 -1.7874 10 1 2.0536 2.3797 -3.7186 11 1 1.1170 2.3016 -1.4832 12 6 2.0400 -0.7213 1.2493 13 6 1.6414 0.0570 2.4766 14 6 2.3908 0.9611 3.1271 15 7 1.6969 1.4602 4.1953 16 1 2.0316 2.1275 4.8147 17 6 0.4510 0.8744 4.2595 18 6 -0.6275 1.0152 5.1264 19 6 -1.7701 0.2722 4.9286 20 6 -1.8592 -0.6221 3.8678 21 9 -2.9878 -1.3430 3.6896 22 6 -0.8003 -0.7808 3.0005 23 6 0.3626 -0.0295 3.1858 24 1 -0.3634 0.4138 -0.9406 25 1 -0.3633 -1.0215 0.1120 26 1 -0.3633 0.6076 0.8287 27 1 2.9557 -0.1053 -4.2498 28 1 3.1264 -0.7995 1.2056 29 1 1.6054 -1.7198 1.2952 30 1 3.3930 1.2514 2.8484 31 1 -0.5693 1.7070 5.9536 32 1 -2.6050 0.3854 5.6042 33 1 -0.8706 -1.4792 2.1798 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259604882.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:18:44 Heat of formation + Delta-G solvation = -3.894386 kcal Electronic energy + Delta-G solvation = -17420.231607 eV Core-core repulsion = 14553.203898 eV Total energy + Delta-G solvation = -2867.027709 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 247.107 amu Computer time = 4.61 seconds Orbital eigenvalues (eV) -48.57645 -41.09373 -36.50566 -35.26993 -32.32582 -30.96755 -29.17628 -28.76969 -25.53400 -24.94479 -22.94727 -21.74672 -20.18960 -18.59836 -17.79320 -17.12237 -16.63523 -16.07924 -15.36388 -15.07010 -14.48028 -14.01177 -13.86415 -13.48330 -13.04812 -12.81859 -12.62162 -12.36407 -12.15636 -12.01543 -11.28112 -11.09497 -10.94464 -10.81982 -10.52321 -10.06998 -9.65226 -9.60361 -9.26460 -8.87218 -8.49030 -7.99653 -7.36364 -6.02325 -4.00192 1.12464 1.54304 2.92752 3.24204 3.30875 3.40011 3.44456 3.87352 4.46060 4.47157 4.73299 4.99136 5.12862 5.30657 5.35012 5.47577 5.66155 5.92627 5.96854 6.14434 6.22026 6.32782 6.36654 6.56072 6.59884 6.77744 6.88539 6.97770 7.03285 7.09827 7.26961 7.40490 7.60743 7.67037 7.86669 8.58909 9.03507 9.61840 11.11378 Molecular weight = 247.11amu Principal moments of inertia in cm(-1) A = 0.027659 B = 0.006574 C = 0.005871 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1012.095939 B = 4258.376015 C = 4767.862075 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.017 3.983 3 H 0.028 0.972 4 C -0.509 4.509 5 H 0.073 0.927 6 C 0.069 3.931 7 N -0.904 5.904 8 Si 0.876 3.124 9 H -0.278 1.278 10 H -0.292 1.292 11 H -0.265 1.265 12 C -0.038 4.038 13 C -0.137 4.137 14 C 0.036 3.964 15 N -0.598 5.598 16 H 0.413 0.587 17 C 0.084 3.916 18 C -0.108 4.108 19 C -0.135 4.135 20 C 0.057 3.943 21 F -0.147 7.147 22 C -0.092 4.092 23 C -0.074 4.074 24 H 0.039 0.961 25 H 0.039 0.961 26 H 0.025 0.975 27 H 0.262 0.738 28 H 0.066 0.934 29 H 0.061 0.939 30 H 0.171 0.829 31 H 0.125 0.875 32 H 0.132 0.868 33 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.115 4.731 17.720 18.797 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.002 4.002 3 H 0.046 0.954 4 C -0.547 4.547 5 H 0.091 0.909 6 C -0.132 4.132 7 N -0.543 5.543 8 Si 0.704 3.296 9 H -0.204 1.204 10 H -0.218 1.218 11 H -0.189 1.189 12 C -0.076 4.076 13 C -0.143 4.143 14 C -0.088 4.088 15 N -0.201 5.201 16 H 0.249 0.751 17 C -0.023 4.023 18 C -0.129 4.129 19 C -0.155 4.155 20 C 0.036 3.964 21 F -0.126 7.126 22 C -0.111 4.111 23 C -0.079 4.079 24 H 0.058 0.942 25 H 0.059 0.941 26 H 0.044 0.956 27 H 0.072 0.928 28 H 0.084 0.916 29 H 0.080 0.920 30 H 0.188 0.812 31 H 0.142 0.858 32 H 0.150 0.850 33 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -4.006 4.816 17.567 18.651 hybrid contribution -0.066 1.292 0.078 1.296 sum -4.072 6.108 17.645 19.111 Atomic orbital electron populations 1.22057 0.99102 0.99355 0.98810 1.19111 0.92366 0.95751 0.92984 0.95380 1.21056 1.42972 0.95517 0.95137 0.90921 1.25045 0.94683 0.98072 0.95372 1.69911 1.46561 1.35694 1.02109 0.86876 0.79019 0.86802 0.76920 1.20382 1.21802 1.18940 1.20200 1.00366 0.97315 0.89710 1.20847 0.92100 1.01858 0.99502 1.21693 0.98488 0.98843 0.89826 1.41669 1.12449 1.38634 1.27379 0.75121 1.18276 0.87550 0.97982 0.98539 1.19710 0.91362 1.02176 0.99649 1.20645 0.98707 0.97815 0.98341 1.17275 0.83860 0.96629 0.98592 1.91458 1.49278 1.76509 1.95304 1.20598 0.91148 1.00248 0.99094 1.18891 0.94771 0.98172 0.96067 0.94210 0.94146 0.95569 0.92802 0.91552 0.92043 0.81209 0.85752 0.84982 0.84384 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.97 8.04 37.16 0.30 -2.67 16 2 C 0.02 0.39 1.92 -91.77 -0.18 0.22 16 3 H 0.03 0.66 5.39 -51.93 -0.28 0.38 16 4 C -0.51 -14.07 8.86 -34.44 -0.31 -14.37 16 5 H 0.07 2.17 8.06 -52.49 -0.42 1.75 16 6 C 0.07 1.98 5.47 -17.82 -0.10 1.89 16 7 N -0.90 -27.64 13.96 55.43 0.77 -26.87 16 8 Si 0.88 21.69 26.94 -169.99 -4.58 17.11 16 9 H -0.28 -6.68 7.11 56.52 0.40 -6.27 16 10 H -0.29 -7.24 7.11 56.52 0.40 -6.83 16 11 H -0.26 -6.39 6.89 56.52 0.39 -6.00 16 12 C -0.04 -0.74 5.20 -27.88 -0.15 -0.88 16 13 C -0.14 -2.33 5.07 -102.71 -0.52 -2.85 16 14 C 0.04 0.50 11.73 -16.74 -0.20 0.30 16 15 N -0.60 -7.15 6.08 -10.64 -0.06 -7.22 16 16 H 0.41 3.36 8.96 -40.82 -0.37 2.99 16 17 C 0.08 1.17 7.27 -83.95 -0.61 0.56 16 18 C -0.11 -1.28 10.06 -39.45 -0.40 -1.68 16 19 C -0.14 -1.68 9.99 -39.48 -0.39 -2.07 16 20 C 0.06 0.84 7.29 -39.45 -0.29 0.56 16 21 F -0.15 -2.23 17.26 2.25 0.04 -2.19 16 22 C -0.09 -1.48 8.85 -39.21 -0.35 -1.83 16 23 C -0.07 -1.21 5.27 -105.14 -0.55 -1.77 16 24 H 0.04 0.91 8.14 -51.93 -0.42 0.49 16 25 H 0.04 0.84 7.41 -51.93 -0.38 0.46 16 26 H 0.03 0.53 6.10 -51.93 -0.32 0.21 16 27 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 28 H 0.07 1.27 8.14 -51.93 -0.42 0.84 16 29 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 30 H 0.17 1.95 8.06 -52.49 -0.42 1.53 16 31 H 0.12 1.07 8.06 -52.49 -0.42 0.65 16 32 H 0.13 1.29 8.06 -52.49 -0.42 0.87 16 33 H 0.14 2.26 7.11 -52.49 -0.37 1.89 16 LS Contribution 280.30 15.07 4.22 4.22 Total: -1.00 -31.43 280.30 -7.17 -38.60 By element: Atomic # 1 Polarization: 4.77 SS G_CDS: -3.83 Total: 0.94 kcal Atomic # 6 Polarization: -20.86 SS G_CDS: -3.73 Total: -24.59 kcal Atomic # 7 Polarization: -34.79 SS G_CDS: 0.71 Total: -34.08 kcal Atomic # 9 Polarization: -2.23 SS G_CDS: 0.04 Total: -2.19 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -4.58 Total: 17.11 kcal Total LS contribution 4.22 Total: 4.22 kcal Total: -31.43 -7.17 -38.60 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259604882.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.703 kcal (2) G-P(sol) polarization free energy of solvation -31.430 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.273 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.168 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.598 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.894 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.62 seconds