Wall clock time and date at job start Mon Mar 30 2020 06:18:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47455 * 2 1 4 4 C 1.50697 * 109.47273 * 239.99730 * 2 1 3 5 5 H 1.07997 * 120.00487 * 274.68052 * 4 2 1 6 6 C 1.37884 * 119.99579 * 94.67881 * 4 2 1 7 7 N 1.31517 * 119.99643 * 183.32815 * 6 4 2 8 8 Si 1.86797 * 120.00311 * 3.32786 * 6 4 2 9 9 H 1.48503 * 109.47020 * 84.70673 * 8 6 4 10 10 H 1.48494 * 109.47291 * 204.70710 * 8 6 4 11 11 H 1.48496 * 109.47082 * 324.71063 * 8 6 4 12 12 C 1.53009 * 109.47327 * 120.00179 * 2 1 3 13 13 C 1.50706 * 109.46830 * 294.99828 * 12 2 1 14 14 C 1.34237 * 126.49623 * 265.00296 * 13 12 2 15 15 N 1.36810 * 109.93294 * 180.02562 * 14 13 12 16 16 H 0.96994 * 125.07008 * 180.02562 * 15 14 13 17 17 C 1.37823 * 109.86277 * 359.97438 * 15 14 13 18 18 C 1.39090 * 133.39262 * 179.97438 * 17 15 14 19 19 C 1.37722 * 119.94793 * 180.02562 * 18 17 15 20 20 C 1.39032 * 120.64821 * 0.02562 * 19 18 17 21 21 F 1.35101 * 119.82929 * 179.97438 * 20 19 18 22 22 C 1.37792 * 120.33581 * 0.23626 * 20 19 18 23 23 C 1.39674 * 119.62775 * 359.49368 * 22 20 19 24 24 H 1.08993 * 109.47355 * 66.25595 * 1 2 3 25 25 H 1.08998 * 109.46999 * 186.25611 * 1 2 3 26 26 H 1.08998 * 109.47087 * 306.24949 * 1 2 3 27 27 H 0.97000 * 119.99786 * 179.97438 * 7 6 4 28 28 H 1.09001 * 109.47352 * 175.00262 * 12 2 1 29 29 H 1.08995 * 109.47272 * 54.99455 * 12 2 1 30 30 H 1.07999 * 125.03582 * 0.02562 * 14 13 12 31 31 H 1.07995 * 120.02782 * 0.05894 * 18 17 15 32 32 H 1.07998 * 119.66938 * 180.02562 * 19 18 17 33 33 H 1.07997 * 120.18302 * 179.74276 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.1404 -1.7850 -1.2273 6 6 2.3540 0.0115 -2.3602 7 7 2.7298 -0.6132 -3.4548 8 14 2.2559 1.8768 -2.3362 9 1 3.5193 2.4318 -1.7874 10 1 2.0536 2.3797 -3.7186 11 1 1.1170 2.3016 -1.4832 12 6 2.0400 -0.7213 1.2493 13 6 1.6414 0.0570 2.4766 14 6 2.3908 0.9611 3.1271 15 7 1.6969 1.4602 4.1953 16 1 2.0316 2.1275 4.8147 17 6 0.4510 0.8744 4.2595 18 6 -0.6275 1.0152 5.1264 19 6 -1.7701 0.2722 4.9286 20 6 -1.8592 -0.6221 3.8678 21 9 -2.9878 -1.3430 3.6896 22 6 -0.8003 -0.7808 3.0005 23 6 0.3626 -0.0295 3.1858 24 1 -0.3634 0.4138 -0.9406 25 1 -0.3633 -1.0215 0.1120 26 1 -0.3633 0.6076 0.8287 27 1 2.9557 -0.1053 -4.2498 28 1 3.1264 -0.7995 1.2056 29 1 1.6054 -1.7198 1.2952 30 1 3.3930 1.2514 2.8484 31 1 -0.5693 1.7070 5.9536 32 1 -2.6050 0.3854 5.6042 33 1 -0.8706 -1.4792 2.1798 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259604882.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:18:36 Heat of formation + Delta-G solvation = -22.414839 kcal Electronic energy + Delta-G solvation = -17421.034714 eV Core-core repulsion = 14553.203898 eV Total energy + Delta-G solvation = -2867.830816 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 247.107 amu Computer time = 1.47 seconds Orbital eigenvalues (eV) -49.73200 -42.16909 -37.59057 -36.96504 -34.19820 -32.42233 -30.45854 -29.82535 -27.23849 -26.79095 -23.99376 -22.81623 -21.84366 -19.95802 -19.19661 -18.64075 -18.06435 -17.15151 -16.54609 -16.37701 -16.11835 -15.31681 -15.20627 -14.81874 -14.58988 -14.36444 -13.89247 -13.85832 -13.58996 -13.44875 -12.87607 -12.77075 -12.56802 -12.21826 -12.00897 -11.73607 -11.57150 -11.30348 -10.92665 -10.67041 -10.45350 -9.06489 -8.49871 -8.24327 -6.26786 0.07513 0.47067 1.35014 1.38867 1.50048 1.79332 2.28100 2.38947 2.78388 3.12764 3.39144 3.74789 3.94763 4.16957 4.24910 4.40432 4.45485 4.63664 4.73658 4.80163 4.89701 4.94227 5.09397 5.14737 5.21315 5.23752 5.28321 5.43212 5.54793 5.71654 5.76086 5.85125 5.88851 6.18436 6.38784 6.79332 6.81222 7.38747 8.92994 Molecular weight = 247.11amu Principal moments of inertia in cm(-1) A = 0.027659 B = 0.006574 C = 0.005871 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1012.095939 B = 4258.376015 C = 4767.862075 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C 0.018 3.982 3 H 0.031 0.969 4 C -0.512 4.512 5 H 0.030 0.970 6 C 0.009 3.991 7 N -0.954 5.954 8 Si 0.942 3.058 9 H -0.259 1.259 10 H -0.292 1.292 11 H -0.252 1.252 12 C -0.025 4.025 13 C -0.184 4.184 14 C 0.064 3.936 15 N -0.577 5.577 16 H 0.435 0.565 17 C 0.077 3.923 18 C -0.089 4.089 19 C -0.134 4.134 20 C 0.048 3.952 21 F -0.154 7.154 22 C -0.122 4.122 23 C -0.098 4.098 24 H 0.023 0.977 25 H 0.036 0.964 26 H 0.044 0.956 27 H 0.264 0.736 28 H 0.064 0.936 29 H 0.044 0.956 30 H 0.199 0.801 31 H 0.168 0.832 32 H 0.164 0.836 33 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.227 7.836 20.883 22.702 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.001 4.001 3 H 0.049 0.951 4 C -0.550 4.550 5 H 0.049 0.951 6 C -0.187 4.187 7 N -0.595 5.595 8 Si 0.767 3.233 9 H -0.184 1.184 10 H -0.219 1.219 11 H -0.176 1.176 12 C -0.063 4.063 13 C -0.191 4.191 14 C -0.063 4.063 15 N -0.182 5.182 16 H 0.276 0.724 17 C -0.031 4.031 18 C -0.109 4.109 19 C -0.154 4.154 20 C 0.028 3.972 21 F -0.133 7.133 22 C -0.142 4.142 23 C -0.103 4.103 24 H 0.042 0.958 25 H 0.055 0.945 26 H 0.063 0.937 27 H 0.073 0.927 28 H 0.083 0.917 29 H 0.063 0.937 30 H 0.216 0.784 31 H 0.186 0.814 32 H 0.181 0.819 33 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -4.123 7.936 20.784 22.626 hybrid contribution -0.042 0.229 -0.834 0.866 sum -4.165 8.165 19.949 21.954 Atomic orbital electron populations 1.21900 0.98274 0.99495 0.98544 1.19078 0.92879 0.95551 0.92605 0.95052 1.21364 1.42366 0.93974 0.97284 0.95147 1.25935 0.94506 1.03471 0.94801 1.70072 1.48541 1.37843 1.03049 0.85805 0.80119 0.80341 0.77071 1.18361 1.21887 1.17622 1.19831 0.99904 0.96657 0.89933 1.20548 0.93918 1.04472 1.00169 1.22026 0.98892 0.96500 0.88852 1.41617 1.11464 1.38214 1.26880 0.72442 1.18498 0.88736 0.97626 0.98232 1.20169 0.89745 1.01452 0.99556 1.21007 1.00067 0.96674 0.97644 1.17560 0.83231 0.97169 0.99287 1.91435 1.49569 1.76870 1.95443 1.20548 0.92465 1.01316 0.99837 1.19017 0.94508 0.99351 0.97396 0.95807 0.94473 0.93698 0.92738 0.91709 0.93685 0.78434 0.81423 0.81895 0.86471 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.53 8.04 71.98 0.58 -4.95 16 2 C 0.02 0.83 1.92 -11.54 -0.02 0.81 16 3 H 0.03 1.44 5.39 -2.39 -0.01 1.43 16 4 C -0.51 -29.40 8.86 25.60 0.23 -29.17 16 5 H 0.03 1.94 8.06 -2.91 -0.02 1.92 16 6 C 0.01 0.53 5.47 84.66 0.46 0.99 16 7 N -0.95 -60.37 13.96 21.45 0.30 -60.07 16 8 Si 0.94 44.67 26.94 68.60 1.85 46.52 16 9 H -0.26 -11.43 7.11 99.48 0.71 -10.73 16 10 H -0.29 -13.82 7.11 99.48 0.71 -13.11 16 11 H -0.25 -11.36 6.89 99.48 0.69 -10.68 16 12 C -0.02 -1.00 5.20 29.85 0.16 -0.84 16 13 C -0.18 -6.06 5.07 -18.63 -0.09 -6.15 16 14 C 0.06 1.57 11.73 83.00 0.97 2.54 16 15 N -0.58 -11.19 6.08 -187.58 -1.14 -12.33 16 16 H 0.43 4.66 8.96 -92.71 -0.83 3.83 16 17 C 0.08 1.87 7.27 38.99 0.28 2.16 16 18 C -0.09 -1.68 10.06 22.35 0.22 -1.45 16 19 C -0.13 -2.86 9.99 22.34 0.22 -2.63 16 20 C 0.05 1.37 7.29 22.35 0.16 1.53 16 21 F -0.15 -4.64 17.26 44.97 0.78 -3.86 16 22 C -0.12 -3.99 8.85 22.51 0.20 -3.79 16 23 C -0.10 -3.09 5.27 -20.20 -0.11 -3.19 16 24 H 0.02 1.08 8.14 -2.39 -0.02 1.06 16 25 H 0.04 1.62 7.41 -2.39 -0.02 1.60 16 26 H 0.04 1.81 6.10 -2.39 -0.01 1.80 16 27 H 0.26 15.64 8.31 -92.71 -0.77 14.87 16 28 H 0.06 2.51 8.14 -2.39 -0.02 2.49 16 29 H 0.04 1.87 8.14 -2.39 -0.02 1.85 16 30 H 0.20 3.66 8.06 -2.91 -0.02 3.64 16 31 H 0.17 1.74 8.06 -2.91 -0.02 1.71 16 32 H 0.16 2.43 8.06 -2.91 -0.02 2.41 16 33 H 0.12 4.14 7.11 -2.91 -0.02 4.11 16 Total: -1.00 -71.04 280.30 5.33 -65.70 By element: Atomic # 1 Polarization: 7.92 SS G_CDS: 0.28 Total: 8.20 kcal Atomic # 6 Polarization: -47.44 SS G_CDS: 3.27 Total: -44.17 kcal Atomic # 7 Polarization: -71.55 SS G_CDS: -0.84 Total: -72.39 kcal Atomic # 9 Polarization: -4.64 SS G_CDS: 0.78 Total: -3.86 kcal Atomic # 14 Polarization: 44.67 SS G_CDS: 1.85 Total: 46.52 kcal Total: -71.04 5.33 -65.70 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259604882.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.289 kcal (2) G-P(sol) polarization free energy of solvation -71.036 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.748 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.333 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.704 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.415 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.47 seconds