Wall clock time and date at job start Mon Mar 30 2020 06:40:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86803 * 119.99813 * 2 1 4 4 H 1.48496 * 109.47429 * 270.00693 * 3 2 1 5 5 H 1.48504 * 109.46900 * 30.00387 * 3 2 1 6 6 H 1.48500 * 109.47072 * 149.99878 * 3 2 1 7 7 C 1.37870 * 120.00226 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00277 * 179.97438 * 7 2 1 9 9 C 1.50700 * 120.00104 * 0.02562 * 7 2 1 10 10 H 1.09009 * 109.53176 * 305.51688 * 9 7 2 11 11 C 1.53117 * 109.50560 * 65.61440 * 9 7 2 12 12 C 1.53118 * 109.15926 * 177.59679 * 11 9 7 13 13 C 1.53038 * 109.28084 * 302.34435 * 12 11 9 14 14 N 1.46851 * 109.51013 * 59.18754 * 13 12 11 15 15 C 1.46842 * 111.19658 * 298.23783 * 14 13 12 16 16 H 1.08996 * 109.46834 * 301.75184 * 15 14 13 17 17 C 1.50704 * 109.46294 * 181.77092 * 15 14 13 18 18 C 1.38157 * 120.03064 * 134.74749 * 17 15 14 19 19 C 1.38249 * 120.05670 * 179.70390 * 18 17 15 20 20 C 1.38278 * 120.11035 * 0.55119 * 19 18 17 21 21 C 1.38126 * 120.05615 * 359.44768 * 20 19 18 22 22 C 1.38714 * 120.02754 * 314.72138 * 17 15 14 23 23 O 1.35902 * 120.05584 * 0.02562 * 22 17 15 24 24 H 0.97003 * 120.00163 * 359.97438 * 1 2 3 25 25 H 1.08995 * 109.52791 * 297.50407 * 11 9 7 26 26 H 1.09001 * 109.52016 * 57.63060 * 11 9 7 27 27 H 1.08997 * 109.50609 * 62.28940 * 12 11 9 28 28 H 1.09003 * 109.50422 * 182.36486 * 12 11 9 29 29 H 1.09007 * 109.46318 * 179.19503 * 13 12 11 30 30 H 1.08994 * 109.46514 * 299.17796 * 13 12 11 31 31 H 1.00899 * 110.98914 * 174.14957 * 14 13 12 32 32 H 1.08006 * 119.97057 * 359.95824 * 18 17 15 33 33 H 1.08001 * 119.94322 * 180.29788 * 19 18 17 34 34 H 1.08005 * 119.97268 * 179.72425 * 20 19 18 35 35 H 1.08001 * 120.02756 * 180.30129 * 21 20 19 36 36 H 0.96702 * 113.99682 * 270.02173 * 23 22 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0466 -1.4000 5 1 1.4465 2.6527 0.7001 6 1 3.5467 1.4403 0.7001 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0017 10 1 0.5517 -2.5169 0.8342 11 6 0.4800 -2.6431 -1.3166 12 6 -0.2339 -3.9975 -1.3348 13 6 0.7973 -5.1147 -1.1604 14 7 1.5073 -4.9325 0.1122 15 6 2.2394 -3.6597 0.1342 16 1 2.9468 -3.6332 -0.6946 17 6 2.9868 -3.5329 1.4366 18 6 4.3012 -3.1072 1.4409 19 6 4.9855 -2.9847 2.6359 20 6 4.3603 -3.2987 3.8286 21 6 3.0463 -3.7247 3.8298 22 6 2.3556 -3.8429 2.6323 23 8 1.0628 -4.2619 2.6308 24 1 -0.4850 0.8401 0.0004 25 1 -0.2554 -1.8426 -1.3972 26 1 1.1747 -2.5852 -2.1545 27 1 -0.9567 -4.0390 -0.5200 28 1 -0.7506 -4.1238 -2.2863 29 1 0.2906 -6.0798 -1.1585 30 1 1.5118 -5.0812 -1.9828 31 1 2.1256 -5.7085 0.2954 32 1 4.7932 -2.8659 0.5102 33 1 6.0114 -2.6472 2.6375 34 1 4.8984 -3.2065 4.7605 35 1 2.5570 -3.9652 4.7620 36 1 0.4172 -3.5456 2.7038 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259608092.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:40:27 Heat of formation + Delta-G solvation = -23.744708 kcal Electronic energy + Delta-G solvation = -18712.452910 eV Core-core repulsion = 15968.024732 eV Total energy + Delta-G solvation = -2744.428178 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 247.131 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.50846 -37.24382 -35.78930 -33.09733 -31.94415 -30.36796 -29.36894 -28.13776 -24.90892 -23.14235 -21.98400 -21.57181 -20.34126 -18.67356 -17.47693 -16.50873 -15.80597 -15.08527 -14.97433 -14.45342 -14.23211 -13.55322 -13.29326 -13.02544 -12.70199 -12.51024 -12.35085 -11.99665 -11.57143 -11.32648 -11.13781 -10.96878 -10.75294 -10.58145 -10.25558 -9.93663 -9.75806 -9.46595 -9.18692 -8.74679 -8.34551 -8.20875 -7.83999 -7.54482 -6.00489 -4.03920 1.89059 1.93914 3.29325 3.36653 3.40089 4.22963 4.42721 4.89522 5.08556 5.31852 5.41343 5.45914 5.56210 5.77867 5.85189 5.89150 6.11035 6.14437 6.24921 6.36109 6.44809 6.53571 6.67629 6.71469 6.85402 6.91524 7.00958 7.17541 7.18426 7.35235 7.43597 7.70521 7.76723 7.96907 8.08959 8.17401 8.45596 8.49486 8.99437 9.60111 11.07174 Molecular weight = 247.13amu Principal moments of inertia in cm(-1) A = 0.015841 B = 0.011904 C = 0.007987 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1767.187009 B = 2351.580910 C = 3504.789510 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.065 3.935 3 Si 0.884 3.116 4 H -0.282 1.282 5 H -0.287 1.287 6 H -0.274 1.274 7 C -0.510 4.510 8 H 0.055 0.945 9 C 0.070 3.930 10 H 0.037 0.963 11 C -0.109 4.109 12 C -0.118 4.118 13 C 0.066 3.934 14 N -0.668 5.668 15 C 0.135 3.865 16 H 0.028 0.972 17 C -0.065 4.065 18 C -0.096 4.096 19 C -0.139 4.139 20 C -0.120 4.120 21 C -0.159 4.159 22 C 0.134 3.866 23 O -0.479 6.479 24 H 0.259 0.741 25 H 0.082 0.918 26 H 0.030 0.970 27 H 0.061 0.939 28 H 0.043 0.957 29 H 0.058 0.942 30 H 0.015 0.985 31 H 0.325 0.675 32 H 0.117 0.883 33 H 0.114 0.886 34 H 0.114 0.886 35 H 0.118 0.882 36 H 0.386 0.614 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.495 -7.149 2.828 8.906 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.137 4.137 3 Si 0.712 3.288 4 H -0.208 1.208 5 H -0.213 1.213 6 H -0.199 1.199 7 C -0.549 4.549 8 H 0.073 0.927 9 C 0.051 3.949 10 H 0.055 0.945 11 C -0.147 4.147 12 C -0.156 4.156 13 C -0.064 4.064 14 N -0.297 5.297 15 C 0.026 3.974 16 H 0.046 0.954 17 C -0.066 4.066 18 C -0.115 4.115 19 C -0.157 4.157 20 C -0.139 4.139 21 C -0.178 4.178 22 C 0.088 3.912 23 O -0.289 6.289 24 H 0.069 0.931 25 H 0.101 0.899 26 H 0.049 0.951 27 H 0.080 0.920 28 H 0.062 0.938 29 H 0.076 0.924 30 H 0.033 0.967 31 H 0.141 0.859 32 H 0.135 0.865 33 H 0.132 0.868 34 H 0.132 0.868 35 H 0.136 0.864 36 H 0.242 0.758 Dipole moment (debyes) X Y Z Total from point charges 4.019 -7.327 3.092 8.911 hybrid contribution 1.033 1.380 -0.603 1.826 sum 5.053 -5.947 2.489 8.191 Atomic orbital electron populations 1.69916 1.05766 1.26341 1.50786 1.24893 0.94758 0.98791 0.95215 0.86711 0.80083 0.83943 0.78022 1.20819 1.21306 1.19903 1.21160 0.92897 0.90466 1.50344 0.92708 1.18616 0.92328 0.89649 0.94293 0.94499 1.21637 0.99545 0.94706 0.98799 1.21665 0.97673 0.96429 0.99791 1.21846 0.96241 0.98448 0.89843 1.60328 1.33044 1.03471 1.32894 1.20623 0.94493 0.91193 0.91074 0.95430 1.20221 0.93710 0.97181 0.95470 1.20893 0.93887 0.98819 0.97899 1.20956 0.99735 1.02325 0.92684 1.20803 0.94698 1.00760 0.97615 1.21343 0.95759 1.03154 0.97510 1.18191 0.85903 0.96060 0.91018 1.84778 1.12697 1.35571 1.95838 0.93109 0.89924 0.95096 0.91993 0.93779 0.92360 0.96655 0.85905 0.86495 0.86818 0.86783 0.86419 0.75804 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.80 11.77 55.43 0.65 -24.14 16 2 C 0.06 1.75 5.33 -17.82 -0.10 1.65 16 3 Si 0.88 21.11 29.54 -169.99 -5.02 16.09 16 4 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 5 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 6 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 7 C -0.51 -13.42 7.87 -34.44 -0.27 -13.69 16 8 H 0.05 1.44 6.86 -52.48 -0.36 1.08 16 9 C 0.07 1.67 1.61 -91.69 -0.15 1.52 16 10 H 0.04 0.97 6.84 -51.92 -0.35 0.61 16 11 C -0.11 -2.51 5.09 -26.61 -0.14 -2.64 16 12 C -0.12 -2.27 6.09 -26.65 -0.16 -2.44 16 13 C 0.07 1.15 6.55 -3.83 -0.03 1.12 16 14 N -0.67 -12.41 4.98 -107.98 -0.54 -12.94 16 15 C 0.14 2.79 1.93 -68.87 -0.13 2.66 16 16 H 0.03 0.60 7.95 -51.93 -0.41 0.18 16 17 C -0.06 -1.28 4.19 -104.47 -0.44 -1.72 16 18 C -0.10 -1.77 8.85 -39.61 -0.35 -2.12 16 19 C -0.14 -2.25 10.04 -39.56 -0.40 -2.65 16 20 C -0.12 -1.88 10.04 -39.61 -0.40 -2.27 16 21 C -0.16 -2.67 9.99 -39.43 -0.39 -3.07 16 22 C 0.13 2.53 6.45 -39.22 -0.25 2.28 16 23 O -0.48 -8.93 11.39 -19.43 -0.22 -9.15 16 24 H 0.26 6.97 8.31 -40.82 -0.34 6.63 16 25 H 0.08 2.13 6.60 -51.93 -0.34 1.79 16 26 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 27 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 28 H 0.04 0.77 8.14 -51.93 -0.42 0.34 16 29 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 30 H 0.02 0.27 8.14 -51.93 -0.42 -0.16 16 31 H 0.32 5.58 8.78 -39.29 -0.35 5.23 16 32 H 0.12 2.05 8.00 -52.48 -0.42 1.63 16 33 H 0.11 1.54 8.06 -52.49 -0.42 1.12 16 34 H 0.11 1.44 8.06 -52.48 -0.42 1.01 16 35 H 0.12 1.73 8.06 -52.49 -0.42 1.31 16 36 H 0.39 6.70 8.22 45.56 0.37 7.07 16 LS Contribution 289.46 15.07 4.36 4.36 Total: -1.00 -28.23 289.46 -8.34 -36.57 By element: Atomic # 1 Polarization: 14.96 SS G_CDS: -4.38 Total: 10.58 kcal Atomic # 6 Polarization: -18.17 SS G_CDS: -3.20 Total: -21.37 kcal Atomic # 7 Polarization: -37.20 SS G_CDS: 0.11 Total: -37.09 kcal Atomic # 8 Polarization: -8.93 SS G_CDS: -0.22 Total: -9.15 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -5.02 Total: 16.09 kcal Total LS contribution 4.36 Total: 4.36 kcal Total: -28.23 -8.34 -36.57 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259608092.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.825 kcal (2) G-P(sol) polarization free energy of solvation -28.227 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.403 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.342 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.569 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.745 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds