Wall clock time and date at job start Mon Mar 30 2020 06:40:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86803 * 119.99813 * 2 1 4 4 H 1.48496 * 109.47429 * 270.00693 * 3 2 1 5 5 H 1.48504 * 109.46900 * 30.00387 * 3 2 1 6 6 H 1.48500 * 109.47072 * 149.99878 * 3 2 1 7 7 C 1.37870 * 120.00226 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00277 * 179.97438 * 7 2 1 9 9 C 1.50700 * 120.00104 * 0.02562 * 7 2 1 10 10 H 1.09009 * 109.53176 * 305.51688 * 9 7 2 11 11 C 1.53117 * 109.50560 * 65.61440 * 9 7 2 12 12 C 1.53118 * 109.15926 * 177.59679 * 11 9 7 13 13 C 1.53038 * 109.28084 * 302.34435 * 12 11 9 14 14 N 1.46851 * 109.51013 * 59.18754 * 13 12 11 15 15 C 1.46842 * 111.19658 * 298.23783 * 14 13 12 16 16 H 1.08996 * 109.46834 * 301.75184 * 15 14 13 17 17 C 1.50704 * 109.46294 * 181.77092 * 15 14 13 18 18 C 1.38157 * 120.03064 * 134.74749 * 17 15 14 19 19 C 1.38249 * 120.05670 * 179.70390 * 18 17 15 20 20 C 1.38278 * 120.11035 * 0.55119 * 19 18 17 21 21 C 1.38126 * 120.05615 * 359.44768 * 20 19 18 22 22 C 1.38714 * 120.02754 * 314.72138 * 17 15 14 23 23 O 1.35902 * 120.05584 * 0.02562 * 22 17 15 24 24 H 0.97003 * 120.00163 * 359.97438 * 1 2 3 25 25 H 1.08995 * 109.52791 * 297.50407 * 11 9 7 26 26 H 1.09001 * 109.52016 * 57.63060 * 11 9 7 27 27 H 1.08997 * 109.50609 * 62.28940 * 12 11 9 28 28 H 1.09003 * 109.50422 * 182.36486 * 12 11 9 29 29 H 1.09007 * 109.46318 * 179.19503 * 13 12 11 30 30 H 1.08994 * 109.46514 * 299.17796 * 13 12 11 31 31 H 1.00899 * 110.98914 * 174.14957 * 14 13 12 32 32 H 1.08006 * 119.97057 * 359.95824 * 18 17 15 33 33 H 1.08001 * 119.94322 * 180.29788 * 19 18 17 34 34 H 1.08005 * 119.97268 * 179.72425 * 20 19 18 35 35 H 1.08001 * 120.02756 * 180.30129 * 21 20 19 36 36 H 0.96702 * 113.99682 * 270.02173 * 23 22 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0466 -1.4000 5 1 1.4465 2.6527 0.7001 6 1 3.5467 1.4403 0.7001 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0017 10 1 0.5517 -2.5169 0.8342 11 6 0.4800 -2.6431 -1.3166 12 6 -0.2339 -3.9975 -1.3348 13 6 0.7973 -5.1147 -1.1604 14 7 1.5073 -4.9325 0.1122 15 6 2.2394 -3.6597 0.1342 16 1 2.9468 -3.6332 -0.6946 17 6 2.9868 -3.5329 1.4366 18 6 4.3012 -3.1072 1.4409 19 6 4.9855 -2.9847 2.6359 20 6 4.3603 -3.2987 3.8286 21 6 3.0463 -3.7247 3.8298 22 6 2.3556 -3.8429 2.6323 23 8 1.0628 -4.2619 2.6308 24 1 -0.4850 0.8401 0.0004 25 1 -0.2554 -1.8426 -1.3972 26 1 1.1747 -2.5852 -2.1545 27 1 -0.9567 -4.0390 -0.5200 28 1 -0.7506 -4.1238 -2.2863 29 1 0.2906 -6.0798 -1.1585 30 1 1.5118 -5.0812 -1.9828 31 1 2.1256 -5.7085 0.2954 32 1 4.7932 -2.8659 0.5102 33 1 6.0114 -2.6472 2.6375 34 1 4.8984 -3.2065 4.7605 35 1 2.5570 -3.9652 4.7620 36 1 0.4172 -3.5456 2.7038 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259608092.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:40:26 Heat of formation + Delta-G solvation = -41.739276 kcal Electronic energy + Delta-G solvation = -18713.233213 eV Core-core repulsion = 15968.024732 eV Total energy + Delta-G solvation = -2745.208481 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 247.131 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.95186 -38.80209 -37.17080 -35.02982 -33.43905 -32.14827 -30.76050 -29.64531 -26.81837 -24.69006 -23.42649 -23.18703 -21.82091 -20.35623 -19.00078 -18.31434 -17.29650 -16.70790 -16.42623 -16.21632 -15.64778 -15.03922 -14.75403 -14.69379 -14.33675 -14.22809 -14.00288 -13.50600 -12.97618 -12.90987 -12.76920 -12.64851 -12.57536 -12.21965 -11.90765 -11.76078 -11.46353 -11.14459 -10.82509 -10.64371 -10.35923 -9.57971 -9.23295 -9.06498 -8.06651 -6.15232 0.54288 0.59174 1.38620 1.40913 1.49382 2.44066 2.88100 3.23505 3.43467 3.70707 4.05244 4.13335 4.28722 4.30180 4.38052 4.50250 4.58205 4.70283 4.80887 4.84941 4.89635 5.10104 5.12725 5.16706 5.24304 5.42251 5.51610 5.59113 5.67033 5.68554 5.78820 5.97324 6.05800 6.15960 6.23004 6.52972 6.72501 6.95549 7.07396 7.50998 8.99912 Molecular weight = 247.13amu Principal moments of inertia in cm(-1) A = 0.015841 B = 0.011904 C = 0.007987 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1767.187009 B = 2351.580910 C = 3504.789510 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C 0.018 3.982 3 Si 0.939 3.061 4 H -0.279 1.279 5 H -0.286 1.286 6 H -0.269 1.269 7 C -0.517 4.517 8 H 0.050 0.950 9 C 0.074 3.926 10 H 0.008 0.992 11 C -0.106 4.106 12 C -0.110 4.110 13 C 0.067 3.933 14 N -0.668 5.668 15 C 0.147 3.853 16 H 0.014 0.986 17 C -0.091 4.091 18 C -0.114 4.114 19 C -0.138 4.138 20 C -0.114 4.114 21 C -0.163 4.163 22 C 0.113 3.887 23 O -0.485 6.485 24 H 0.258 0.742 25 H 0.049 0.951 26 H 0.022 0.978 27 H 0.051 0.949 28 H 0.066 0.934 29 H 0.088 0.912 30 H 0.021 0.979 31 H 0.336 0.664 32 H 0.116 0.884 33 H 0.144 0.856 34 H 0.152 0.848 35 H 0.138 0.862 36 H 0.386 0.614 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.911 -7.804 3.715 10.471 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.181 4.181 3 Si 0.766 3.234 4 H -0.205 1.205 5 H -0.212 1.212 6 H -0.194 1.194 7 C -0.555 4.555 8 H 0.069 0.931 9 C 0.055 3.945 10 H 0.026 0.974 11 C -0.144 4.144 12 C -0.148 4.148 13 C -0.062 4.062 14 N -0.299 5.299 15 C 0.038 3.962 16 H 0.032 0.968 17 C -0.092 4.092 18 C -0.133 4.133 19 C -0.156 4.156 20 C -0.132 4.132 21 C -0.181 4.181 22 C 0.067 3.933 23 O -0.294 6.294 24 H 0.067 0.933 25 H 0.068 0.932 26 H 0.041 0.959 27 H 0.070 0.930 28 H 0.084 0.916 29 H 0.106 0.894 30 H 0.039 0.961 31 H 0.153 0.847 32 H 0.134 0.866 33 H 0.162 0.838 34 H 0.169 0.831 35 H 0.156 0.844 36 H 0.242 0.758 Dipole moment (debyes) X Y Z Total from point charges 5.447 -7.998 3.977 10.462 hybrid contribution 0.619 1.568 -0.849 1.887 sum 6.067 -6.430 3.128 9.377 Atomic orbital electron populations 1.70042 1.06901 1.26762 1.51886 1.25562 0.95469 1.01684 0.95341 0.85839 0.79036 0.80526 0.78013 1.20492 1.21218 1.19398 1.21454 0.92857 0.91770 1.49461 0.93138 1.18465 0.92327 0.90329 0.93358 0.97367 1.21505 0.98734 0.96065 0.98125 1.21575 0.97769 0.94876 1.00609 1.21884 0.95853 0.98916 0.89519 1.60272 1.33021 1.03013 1.33595 1.20305 0.93391 0.90956 0.91594 0.96777 1.20264 0.94586 0.99118 0.95244 1.21068 0.93780 0.99378 0.99072 1.21333 1.01008 1.01215 0.92014 1.21255 0.94201 0.98781 0.98931 1.21638 0.96433 1.02559 0.97462 1.18435 0.85997 0.97128 0.91706 1.84752 1.12964 1.35776 1.95951 0.93332 0.93198 0.95928 0.93030 0.91573 0.89356 0.96122 0.84678 0.86598 0.83835 0.83056 0.84393 0.75802 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -52.45 11.77 21.44 0.25 -52.19 16 2 C 0.02 0.98 5.33 84.65 0.45 1.43 16 3 Si 0.94 43.63 29.54 68.60 2.03 45.65 16 4 H -0.28 -12.73 7.11 99.48 0.71 -12.03 16 5 H -0.29 -13.17 7.11 99.48 0.71 -12.47 16 6 H -0.27 -12.19 7.11 99.48 0.71 -11.49 16 7 C -0.52 -27.73 7.87 25.60 0.20 -27.53 16 8 H 0.05 2.69 6.86 -2.91 -0.02 2.67 16 9 C 0.07 3.63 1.61 -11.49 -0.02 3.61 16 10 H 0.01 0.45 6.84 -2.38 -0.02 0.43 16 11 C -0.11 -5.02 5.09 30.67 0.16 -4.86 16 12 C -0.11 -4.22 6.09 30.65 0.19 -4.04 16 13 C 0.07 2.26 6.55 86.33 0.57 2.82 16 14 N -0.67 -24.41 4.98 -495.55 -2.47 -26.87 16 15 C 0.15 6.13 1.93 44.20 0.09 6.22 16 16 H 0.01 0.63 7.95 -2.39 -0.02 0.61 16 17 C -0.09 -3.59 4.19 -19.77 -0.08 -3.67 16 18 C -0.11 -4.10 8.85 22.25 0.20 -3.90 16 19 C -0.14 -4.10 10.04 22.28 0.22 -3.88 16 20 C -0.11 -3.16 10.04 22.25 0.22 -2.94 16 21 C -0.16 -5.11 9.99 22.37 0.22 -4.89 16 22 C 0.11 4.19 6.45 22.51 0.15 4.34 16 23 O -0.48 -18.08 11.39 -92.45 -1.05 -19.13 16 24 H 0.26 14.19 8.31 -92.71 -0.77 13.42 16 25 H 0.05 2.66 6.60 -2.39 -0.02 2.65 16 26 H 0.02 1.06 8.14 -2.39 -0.02 1.04 16 27 H 0.05 2.07 8.14 -2.39 -0.02 2.05 16 28 H 0.07 2.22 8.14 -2.39 -0.02 2.20 16 29 H 0.09 2.47 8.14 -2.38 -0.02 2.45 16 30 H 0.02 0.68 8.14 -2.39 -0.02 0.66 16 31 H 0.34 11.14 8.78 -89.69 -0.79 10.35 16 32 H 0.12 4.04 8.00 -2.91 -0.02 4.02 16 33 H 0.14 3.35 8.06 -2.91 -0.02 3.32 16 34 H 0.15 3.07 8.06 -2.91 -0.02 3.04 16 35 H 0.14 3.69 8.06 -2.91 -0.02 3.67 16 36 H 0.39 13.84 8.22 -74.06 -0.61 13.23 16 Total: -1.00 -61.01 289.46 1.01 -60.00 By element: Atomic # 1 Polarization: 30.15 SS G_CDS: -0.31 Total: 29.84 kcal Atomic # 6 Polarization: -39.85 SS G_CDS: 2.56 Total: -37.29 kcal Atomic # 7 Polarization: -76.85 SS G_CDS: -2.21 Total: -79.07 kcal Atomic # 8 Polarization: -18.08 SS G_CDS: -1.05 Total: -19.13 kcal Atomic # 14 Polarization: 43.63 SS G_CDS: 2.03 Total: 45.65 kcal Total: -61.01 1.01 -60.00 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259608092.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.258 kcal (2) G-P(sol) polarization free energy of solvation -61.006 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.748 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.009 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.997 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.739 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds