Wall clock time and date at job start Mon Mar 30 2020 06:26:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86798 * 120.00059 * 2 1 4 4 H 1.48503 * 109.46972 * 269.99890 * 3 2 1 5 5 H 1.48493 * 109.47217 * 29.99555 * 3 2 1 6 6 H 1.48495 * 109.46985 * 150.00182 * 3 2 1 7 7 C 1.37878 * 119.99729 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99671 * 180.02562 * 7 2 1 9 9 C 1.50703 * 120.00211 * 359.97438 * 7 2 1 10 10 C 1.52999 * 109.47037 * 180.02562 * 9 7 2 11 11 C 1.52995 * 109.47091 * 180.02562 * 10 9 7 12 12 H 1.09001 * 109.26683 * 298.14604 * 11 10 9 13 13 N 1.46632 * 109.27505 * 57.65649 * 11 10 9 14 14 C 1.47168 * 110.23535 * 172.75901 * 13 11 10 15 15 C 1.52900 * 108.49422 * 288.72534 * 14 13 11 16 16 C 1.50724 * 109.96100 * 50.36599 * 15 14 13 17 17 C 1.38726 * 118.46498 * 163.27523 * 16 15 14 18 18 C 1.38057 * 120.47349 * 179.84254 * 17 16 15 19 19 C 1.38169 * 119.88675 * 359.97438 * 18 17 16 20 20 C 1.38508 * 119.80815 * 0.06526 * 19 18 17 21 21 O 1.35897 * 119.87510 * 179.97438 * 20 19 18 22 22 C 1.37692 * 121.64654 * 343.19118 * 16 15 14 23 23 H 0.96999 * 120.00338 * 359.97438 * 1 2 3 24 24 H 1.08998 * 109.47056 * 60.00008 * 9 7 2 25 25 H 1.08996 * 109.46956 * 299.99765 * 9 7 2 26 26 H 1.08998 * 109.47465 * 59.99923 * 10 9 7 27 27 H 1.09005 * 109.46950 * 299.99732 * 10 9 7 28 28 H 1.00904 * 111.00224 * 49.34584 * 13 11 10 29 29 H 1.09002 * 109.63039 * 48.42826 * 14 13 11 30 30 H 1.08997 * 109.63447 * 169.02391 * 14 13 11 31 31 H 1.08995 * 109.38298 * 170.51572 * 15 14 13 32 32 H 1.08997 * 109.38662 * 290.21427 * 15 14 13 33 33 H 1.08001 * 119.76410 * 359.82103 * 17 16 15 34 34 H 1.07996 * 120.05544 * 179.97438 * 18 17 16 35 35 H 1.08005 * 120.09538 * 180.09279 * 19 18 17 36 36 H 0.96701 * 113.99826 * 83.52715 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0463 -1.4001 5 1 1.4466 2.6526 0.6999 6 1 3.5466 1.4401 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2509 -2.4992 0.0017 10 6 2.2452 -3.6621 0.0027 11 6 1.4802 -4.9871 0.0033 12 1 0.8797 -5.0553 0.9104 13 7 0.5973 -5.0367 -1.1664 14 6 -0.0190 -6.3681 -1.2828 15 6 1.0570 -7.3645 -1.7155 16 6 2.2661 -7.2351 -0.8249 17 6 3.1960 -8.2645 -0.8188 18 6 4.3203 -8.1878 -0.0212 19 6 4.5235 -7.0786 0.7772 20 6 3.5969 -6.0491 0.7745 21 8 3.7952 -4.9578 1.5596 22 6 2.4625 -6.1283 -0.0297 23 1 -0.4850 0.8400 0.0004 24 1 0.6239 -2.5575 -0.8880 25 1 0.6247 -2.5563 0.8920 26 1 2.8719 -3.6036 0.8926 27 1 2.8718 -3.6052 -0.8874 28 1 1.0984 -4.7953 -2.0083 29 1 -0.4288 -6.6675 -0.3182 30 1 -0.8133 -6.3400 -2.0287 31 1 0.6616 -8.3777 -1.6440 32 1 1.3441 -7.1616 -2.7472 33 1 3.0392 -9.1324 -1.4421 34 1 5.0396 -8.9933 -0.0214 35 1 5.4026 -7.0143 1.4014 36 1 4.3741 -4.2904 1.1665 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259618126.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:26:39 Heat of formation + Delta-G solvation = -42.235833 kcal Electronic energy + Delta-G solvation = -18007.550725 eV Core-core repulsion = 15262.320711 eV Total energy + Delta-G solvation = -2745.230014 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 247.131 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.60374 -38.52632 -37.61944 -35.47135 -33.79956 -31.88236 -31.34166 -29.37480 -27.18410 -24.82005 -24.21281 -23.00785 -21.93561 -21.11284 -18.75114 -18.42947 -17.13822 -17.08949 -16.57594 -16.39646 -15.89362 -15.62547 -15.04578 -14.72700 -14.30460 -14.24613 -13.94511 -13.45483 -13.41586 -13.05685 -12.70953 -12.67126 -12.61191 -12.34061 -12.23953 -12.09602 -11.63354 -11.33937 -11.02134 -10.78384 -10.43057 -9.58558 -9.41911 -9.22733 -8.11688 -6.22593 0.30326 0.35589 1.41450 1.43340 1.53918 2.45038 2.65106 3.20721 3.28267 3.42547 3.76953 3.80135 4.01860 4.13205 4.27124 4.32190 4.44862 4.54516 4.62029 4.74062 4.88317 4.92724 4.97267 5.07467 5.10764 5.16997 5.40700 5.47535 5.50987 5.59636 5.64881 5.89520 5.93533 6.03964 6.18002 6.33988 6.51127 6.80794 6.97376 7.45635 9.00027 Molecular weight = 247.13amu Principal moments of inertia in cm(-1) A = 0.029703 B = 0.005983 C = 0.005174 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 942.446254 B = 4679.064395 C = 5410.630150 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.003 4.003 3 Si 0.963 3.037 4 H -0.273 1.273 5 H -0.285 1.285 6 H -0.262 1.262 7 C -0.539 4.539 8 H 0.061 0.939 9 C 0.041 3.959 10 C -0.109 4.109 11 C 0.143 3.857 12 H 0.056 0.944 13 N -0.685 5.685 14 C 0.052 3.948 15 C -0.110 4.110 16 C -0.077 4.077 17 C -0.132 4.132 18 C -0.103 4.103 19 C -0.161 4.161 20 C 0.098 3.902 21 O -0.505 6.505 22 C -0.150 4.150 23 H 0.260 0.740 24 H 0.002 0.998 25 H -0.027 1.027 26 H 0.093 0.907 27 H 0.043 0.957 28 H 0.341 0.659 29 H 0.062 0.938 30 H 0.095 0.905 31 H 0.103 0.897 32 H 0.089 0.911 33 H 0.151 0.849 34 H 0.156 0.844 35 H 0.142 0.858 36 H 0.403 0.597 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.170 -18.346 -3.239 20.343 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.200 4.200 3 Si 0.788 3.212 4 H -0.198 1.198 5 H -0.211 1.211 6 H -0.186 1.186 7 C -0.577 4.577 8 H 0.079 0.921 9 C 0.004 3.996 10 C -0.146 4.146 11 C 0.033 3.967 12 H 0.074 0.926 13 N -0.313 5.313 14 C -0.078 4.078 15 C -0.148 4.148 16 C -0.078 4.078 17 C -0.150 4.150 18 C -0.121 4.121 19 C -0.180 4.180 20 C 0.053 3.947 21 O -0.319 6.319 22 C -0.152 4.152 23 H 0.069 0.931 24 H 0.021 0.979 25 H -0.009 1.009 26 H 0.111 0.889 27 H 0.062 0.938 28 H 0.160 0.840 29 H 0.081 0.919 30 H 0.113 0.887 31 H 0.121 0.879 32 H 0.107 0.893 33 H 0.168 0.832 34 H 0.174 0.826 35 H 0.160 0.840 36 H 0.264 0.736 Dipole moment (debyes) X Y Z Total from point charges 7.099 -18.213 -2.529 19.710 hybrid contribution 1.017 0.977 -0.324 1.447 sum 8.116 -17.236 -2.853 19.264 Atomic orbital electron populations 1.70141 1.07890 1.27388 1.52097 1.25980 0.95680 1.03263 0.95073 0.85486 0.78706 0.78675 0.78375 1.19845 1.21101 1.18594 1.21781 0.93490 0.92573 1.49868 0.92114 1.18795 0.93991 0.92161 0.94643 1.22008 0.98439 0.92248 1.01942 1.20167 0.90704 0.92287 0.93567 0.92595 1.60938 1.35998 1.28395 1.05971 1.22184 0.96841 0.86693 1.02032 1.21216 0.92956 1.02202 0.98461 1.19795 0.97698 0.93187 0.97082 1.21408 0.94131 0.98919 1.00500 1.21319 0.97907 0.97728 0.95134 1.21645 0.99990 0.94821 1.01516 1.18684 0.94456 0.89218 0.92319 1.84840 1.71741 1.30126 1.45232 1.20879 0.98145 0.98050 0.98141 0.93085 0.97920 1.00886 0.88878 0.93847 0.84040 0.91931 0.88705 0.87862 0.89299 0.83169 0.82611 0.83985 0.73620 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -59.14 13.29 21.45 0.28 -58.85 16 2 C 0.00 -0.17 5.46 84.66 0.46 0.30 16 3 Si 0.96 45.28 29.54 68.60 2.03 47.31 16 4 H -0.27 -12.36 7.11 99.48 0.71 -11.66 16 5 H -0.29 -13.22 7.11 99.48 0.71 -12.52 16 6 H -0.26 -11.64 7.11 99.48 0.71 -10.94 16 7 C -0.54 -31.41 9.11 25.60 0.23 -31.18 16 8 H 0.06 3.33 7.74 -2.91 -0.02 3.31 16 9 C 0.04 2.28 4.79 29.85 0.14 2.42 16 10 C -0.11 -4.65 4.00 30.59 0.12 -4.53 16 11 C 0.14 5.41 2.48 44.19 0.11 5.52 16 12 H 0.06 2.41 8.14 -2.39 -0.02 2.39 16 13 N -0.68 -24.20 5.77 -495.74 -2.86 -27.06 16 14 C 0.05 1.37 6.62 86.22 0.57 1.94 16 15 C -0.11 -2.31 5.82 29.82 0.17 -2.13 16 16 C -0.08 -1.96 5.77 -19.87 -0.11 -2.08 16 17 C -0.13 -2.65 9.65 22.34 0.22 -2.44 16 18 C -0.10 -1.99 10.04 22.21 0.22 -1.77 16 19 C -0.16 -3.80 9.98 22.32 0.22 -3.57 16 20 C 0.10 2.93 6.43 22.58 0.15 3.08 16 21 O -0.50 -15.83 10.51 -92.40 -0.97 -16.80 16 22 C -0.15 -4.72 5.48 -19.77 -0.11 -4.83 16 23 H 0.26 15.48 8.31 -92.71 -0.77 14.71 16 24 H 0.00 0.14 7.53 -2.39 -0.02 0.12 16 25 H -0.03 -1.70 8.14 -2.39 -0.02 -1.72 16 26 H 0.09 3.82 4.33 0.90 0.00 3.82 16 27 H 0.04 1.78 8.14 -2.38 -0.02 1.76 16 28 H 0.34 11.72 8.56 -89.69 -0.77 10.95 16 29 H 0.06 1.76 8.05 -2.39 -0.02 1.74 16 30 H 0.09 2.19 8.14 -2.39 -0.02 2.17 16 31 H 0.10 1.64 8.14 -2.39 -0.02 1.62 16 32 H 0.09 1.67 8.14 -2.39 -0.02 1.66 16 33 H 0.15 2.07 8.06 -2.91 -0.02 2.04 16 34 H 0.16 1.93 8.06 -2.91 -0.02 1.90 16 35 H 0.14 2.76 8.06 -2.91 -0.02 2.73 16 36 H 0.40 10.26 7.90 -64.90 -0.51 9.74 16 Total: -1.00 -71.53 291.50 0.71 -70.83 By element: Atomic # 1 Polarization: 24.02 SS G_CDS: -0.17 Total: 23.85 kcal Atomic # 6 Polarization: -41.66 SS G_CDS: 2.40 Total: -39.27 kcal Atomic # 7 Polarization: -83.33 SS G_CDS: -2.57 Total: -85.91 kcal Atomic # 8 Polarization: -15.83 SS G_CDS: -0.97 Total: -16.80 kcal Atomic # 14 Polarization: 45.28 SS G_CDS: 2.03 Total: 47.31 kcal Total: -71.53 0.71 -70.83 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259618126.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.589 kcal (2) G-P(sol) polarization free energy of solvation -71.531 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.942 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.706 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.825 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.236 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds