Wall clock time and date at job start Mon Mar 30 2020 05:50:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.35182 * 128.03785 * 2 1 4 4 O 1.34077 * 106.72348 * 180.02562 * 3 2 1 5 5 N 1.20903 * 111.87525 * 359.97438 * 4 3 2 6 6 C 1.31144 * 111.38678 * 0.02562 * 5 4 3 7 7 C 1.48005 * 126.95956 * 179.73815 * 6 5 4 8 8 C 1.36617 * 126.33720 * 325.02844 * 7 6 5 9 9 C 1.39476 * 107.85822 * 179.97438 * 8 7 6 10 10 C 1.50703 * 125.69590 * 180.02562 * 9 8 7 11 11 C 1.52997 * 109.46663 * 125.00169 * 10 9 8 12 12 C 1.50700 * 109.47020 * 180.02562 * 11 10 9 13 13 H 1.07998 * 120.00085 * 359.97438 * 12 11 10 14 14 C 1.37884 * 119.99933 * 180.02562 * 12 11 10 15 15 N 1.31508 * 119.99973 * 359.97438 * 14 12 11 16 16 Si 1.86798 * 119.99690 * 179.97438 * 14 12 11 17 17 H 1.48505 * 109.47024 * 59.99914 * 16 14 12 18 18 H 1.48504 * 109.46902 * 179.97438 * 16 14 12 19 19 H 1.48496 * 109.47137 * 299.99808 * 16 14 12 20 20 N 1.30900 * 108.60221 * 359.97438 * 9 8 7 21 21 N 1.36315 * 126.33877 * 144.70797 * 7 6 5 22 22 H 0.97001 * 126.14602 * 0.02562 * 21 7 6 23 23 H 1.08993 * 109.47453 * 269.98494 * 1 2 3 24 24 H 1.09006 * 109.46783 * 29.97847 * 1 2 3 25 25 H 1.09001 * 109.47243 * 149.97726 * 1 2 3 26 26 H 1.08006 * 126.63540 * 0.02562 * 3 2 1 27 27 H 1.07997 * 126.07245 * 359.97438 * 8 7 6 28 28 H 1.08997 * 109.46801 * 244.99629 * 10 9 8 29 29 H 1.09001 * 109.47128 * 5.00383 * 10 9 8 30 30 H 1.08996 * 109.47262 * 300.00237 * 11 10 9 31 31 H 1.09006 * 109.47517 * 59.99917 * 11 10 9 32 32 H 0.97004 * 119.99950 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3400 1.0647 0.0000 4 8 3.5890 0.5773 -0.0006 5 7 3.6009 -0.6316 -0.0004 6 6 2.3845 -1.1218 -0.0003 7 6 2.0011 -2.5513 -0.0054 8 6 2.6613 -3.5642 -0.6416 9 6 1.9696 -4.7492 -0.3913 10 6 2.3507 -6.1146 -0.9026 11 6 2.4799 -7.0824 0.2754 12 6 2.8616 -8.4477 -0.2357 13 1 2.9981 -8.6091 -1.2948 14 6 3.0358 -9.4910 0.6488 15 7 2.8692 -9.2946 1.9384 16 14 3.5083 -11.1835 0.0151 17 1 4.8067 -11.0994 -0.7006 18 1 3.6338 -12.1228 1.1585 19 1 2.4606 -11.6737 -0.9161 20 7 0.9346 -4.4773 0.3627 21 7 0.9273 -3.1019 0.6286 22 1 0.2744 -2.6266 1.1659 23 1 -0.3634 -0.0003 1.0276 24 1 -0.3633 0.8902 -0.5135 25 1 -0.3634 -0.8898 -0.5142 26 1 2.0545 2.1063 0.0004 27 1 3.5594 -3.4650 -1.2331 28 1 1.5814 -6.4745 -1.5857 29 1 3.3036 -6.0528 -1.4282 30 1 3.2490 -6.7224 0.9587 31 1 1.5270 -7.1442 0.8011 32 1 2.9920 -10.0285 2.5607 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259618325.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:50:23 Heat of formation + Delta-G solvation = 117.669082 kcal Electronic energy + Delta-G solvation = -16685.224838 eV Core-core repulsion = 13843.388478 eV Total energy + Delta-G solvation = -2841.836360 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 247.106 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -45.18869 -40.79573 -35.42302 -34.00184 -32.72012 -32.06210 -29.65819 -29.41890 -28.42040 -25.29519 -23.84110 -21.94636 -21.64969 -20.23204 -19.02126 -18.34856 -17.83519 -16.69786 -16.17859 -15.06879 -14.56131 -14.39755 -13.86788 -13.69487 -13.50011 -13.36310 -12.84928 -12.75229 -12.53563 -11.97691 -11.50662 -11.14491 -10.89663 -10.76499 -10.58528 -10.38437 -9.89140 -9.73261 -9.47213 -9.07171 -8.67132 -8.36948 -8.26733 -5.92378 -3.95290 1.07449 1.41207 2.39803 2.86878 2.99505 3.20574 3.38876 3.42784 3.45444 3.94577 4.14927 4.51612 4.52400 4.81637 5.09901 5.13307 5.17274 5.28695 5.37861 5.43237 5.71214 5.75857 5.93241 6.21354 6.52054 6.62274 6.84100 7.14680 7.40138 7.76917 7.89075 7.96352 8.06197 8.09011 8.47115 9.11759 9.67999 11.18904 Molecular weight = 247.11amu Principal moments of inertia in cm(-1) A = 0.052283 B = 0.003881 C = 0.003764 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 535.414911 B = 7213.323514 C = 7438.033109 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C -0.192 4.192 3 C -0.062 4.062 4 O 0.113 5.887 5 N -0.335 5.335 6 C 0.079 3.921 7 C 0.128 3.872 8 C -0.219 4.219 9 C 0.099 3.901 10 C -0.041 4.041 11 C 0.029 3.971 12 C -0.522 4.522 13 H 0.057 0.943 14 C 0.057 3.943 15 N -0.894 5.894 16 Si 0.893 3.107 17 H -0.277 1.277 18 H -0.288 1.288 19 H -0.277 1.277 20 N -0.262 5.262 21 N -0.475 5.475 22 H 0.433 0.567 23 H 0.076 0.924 24 H 0.077 0.923 25 H 0.073 0.927 26 H 0.219 0.781 27 H 0.149 0.851 28 H 0.071 0.929 29 H 0.071 0.929 30 H 0.016 0.984 31 H 0.025 0.975 32 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.411 22.657 -4.094 23.442 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.196 4.196 3 C -0.142 4.142 4 O 0.042 5.958 5 N -0.035 5.035 6 C -0.080 4.080 7 C 0.000 4.000 8 C -0.250 4.250 9 C -0.067 4.067 10 C -0.080 4.080 11 C -0.009 4.009 12 C -0.561 4.561 13 H 0.075 0.925 14 C -0.144 4.144 15 N -0.533 5.533 16 Si 0.721 3.279 17 H -0.202 1.202 18 H -0.214 1.214 19 H -0.202 1.202 20 N -0.086 5.086 21 N -0.185 5.185 22 H 0.277 0.723 23 H 0.094 0.906 24 H 0.096 0.904 25 H 0.092 0.908 26 H 0.236 0.764 27 H 0.167 0.833 28 H 0.089 0.911 29 H 0.090 0.910 30 H 0.034 0.966 31 H 0.043 0.957 32 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -4.166 21.524 -3.330 22.175 hybrid contribution -0.168 -0.041 -0.282 0.331 sum -4.334 21.483 -3.612 22.212 Atomic orbital electron populations 1.20184 0.87159 1.03838 1.02908 1.21430 0.98697 0.91167 1.08328 1.25668 0.82998 1.01099 1.04473 1.84850 1.28990 1.15419 1.66531 1.74315 1.20844 0.90863 1.17491 1.20937 0.89008 0.92804 1.05242 1.17922 0.92682 0.88791 1.00572 1.21459 1.04077 0.90658 1.08815 1.22854 0.91705 0.97385 0.94758 1.20395 1.00449 0.86723 1.00437 1.19060 0.97843 0.92115 0.91864 1.21210 1.47073 0.94424 0.93369 0.92516 1.25016 0.95541 0.98980 0.94849 1.69973 1.49665 1.32145 1.01546 0.86651 0.79059 0.83993 0.78242 1.20225 1.21371 1.20226 1.77503 1.22447 0.88711 1.19889 1.46596 1.22758 1.06591 1.42548 0.72298 0.90573 0.90362 0.90771 0.76410 0.83336 0.91076 0.91003 0.96574 0.95677 0.92998 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.55 10.32 36.01 0.37 -0.17 16 2 C -0.19 -1.80 6.35 -104.10 -0.66 -2.46 16 3 C -0.06 -0.45 12.24 29.64 0.36 -0.09 16 4 O 0.11 1.21 11.18 17.08 0.19 1.40 16 5 N -0.33 -4.69 12.13 33.29 0.40 -4.29 16 6 C 0.08 1.06 7.20 -82.55 -0.59 0.47 16 7 C 0.13 2.04 7.07 -82.46 -0.58 1.45 16 8 C -0.22 -3.91 10.66 -39.71 -0.42 -4.34 16 9 C 0.10 2.00 6.46 -82.53 -0.53 1.47 16 10 C -0.04 -0.89 5.73 -27.88 -0.16 -1.05 16 11 C 0.03 0.78 4.93 -27.88 -0.14 0.65 16 12 C -0.52 -15.11 9.11 -34.44 -0.31 -15.42 16 13 H 0.06 1.56 7.74 -52.49 -0.41 1.15 16 14 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 15 N -0.89 -27.71 13.29 55.43 0.74 -26.98 16 16 Si 0.89 22.03 29.54 -169.99 -5.02 17.01 16 17 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 18 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 19 H -0.28 -6.68 7.11 56.52 0.40 -6.27 16 20 N -0.26 -5.24 12.65 33.60 0.42 -4.81 16 21 N -0.47 -7.42 7.43 33.29 0.25 -7.17 16 22 H 0.43 5.16 8.91 -182.61 -1.63 3.54 16 23 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 24 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16 25 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 26 H 0.22 0.50 8.06 -52.48 -0.42 0.07 16 27 H 0.15 2.44 8.06 -52.49 -0.42 2.02 16 28 H 0.07 1.49 8.14 -51.93 -0.42 1.06 16 29 H 0.07 1.45 8.12 -51.93 -0.42 1.03 16 30 H 0.02 0.47 8.14 -51.93 -0.42 0.04 16 31 H 0.02 0.73 8.14 -51.93 -0.42 0.31 16 32 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 LS Contribution 291.09 15.07 4.39 4.39 Total: -1.00 -34.63 291.09 -6.37 -41.00 By element: Atomic # 1 Polarization: 2.32 SS G_CDS: -4.97 Total: -2.65 kcal Atomic # 6 Polarization: -15.13 SS G_CDS: -2.77 Total: -17.90 kcal Atomic # 7 Polarization: -45.06 SS G_CDS: 1.81 Total: -43.25 kcal Atomic # 8 Polarization: 1.21 SS G_CDS: 0.19 Total: 1.40 kcal Atomic # 14 Polarization: 22.03 SS G_CDS: -5.02 Total: 17.01 kcal Total LS contribution 4.39 Total: 4.39 kcal Total: -34.63 -6.37 -41.00 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259618325.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 158.669 kcal (2) G-P(sol) polarization free energy of solvation -34.630 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 124.040 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.370 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.000 kcal (6) G-S(sol) free energy of system = (1) + (5) 117.669 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds