Wall clock time and date at job start Mon Mar 30 2020 05:48:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.30655 * 125.95066 * 2 1 4 4 N 1.40003 * 108.57966 * 180.27406 * 3 2 1 5 5 H 0.97007 * 125.87965 * 179.68854 * 4 3 2 6 6 C 1.34890 * 108.24250 * 359.71671 * 4 3 2 7 7 C 1.36617 * 107.57334 * 359.97438 * 6 4 3 8 8 C 1.48035 * 126.25025 * 180.02562 * 7 6 4 9 9 C 1.35673 * 126.57091 * 130.02554 * 8 7 6 10 10 N 1.34254 * 107.52458 * 180.02562 * 9 8 7 11 11 C 1.30294 * 108.88427 * 359.97438 * 10 9 8 12 12 C 1.50705 * 125.49132 * 180.02562 * 11 10 9 13 13 C 1.53002 * 109.46724 * 89.97669 * 12 11 10 14 14 C 1.50697 * 109.46720 * 179.97438 * 13 12 11 15 15 H 1.07999 * 120.00297 * 0.02562 * 14 13 12 16 16 C 1.37886 * 119.99733 * 179.97438 * 14 13 12 17 17 N 1.31510 * 119.99833 * 179.97438 * 16 14 13 18 18 Si 1.86802 * 120.00026 * 0.02562 * 16 14 13 19 19 H 1.48494 * 109.47343 * 89.99642 * 18 16 14 20 20 H 1.48503 * 109.46809 * 209.99847 * 18 16 14 21 21 H 1.48499 * 109.46984 * 329.99611 * 18 16 14 22 22 O 1.34099 * 109.01145 * 0.02562 * 11 10 9 23 23 H 1.09007 * 109.47295 * 270.19678 * 1 2 3 24 24 H 1.09005 * 109.47368 * 30.19319 * 1 2 3 25 25 H 1.08996 * 109.47128 * 150.19491 * 1 2 3 26 26 H 1.07997 * 126.21627 * 179.97438 * 6 4 3 27 27 H 1.07998 * 126.23594 * 0.03418 * 9 8 7 28 28 H 1.08991 * 109.46928 * 209.97885 * 12 11 10 29 29 H 1.09001 * 109.47295 * 329.97939 * 12 11 10 30 30 H 1.09000 * 109.47329 * 299.99853 * 13 12 11 31 31 H 1.09001 * 109.47014 * 60.00098 * 13 12 11 32 32 H 0.96998 * 120.00289 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2740 1.0577 0.0000 4 7 3.6102 0.6397 -0.0063 5 1 4.3875 1.2201 -0.0120 6 6 3.6307 -0.7090 -0.0039 7 6 2.3348 -1.1413 0.0045 8 6 1.8822 -2.5507 0.0103 9 6 0.9725 -3.1041 0.8512 10 7 0.8513 -4.3995 0.5197 11 6 1.6444 -4.6545 -0.4820 12 6 1.8040 -5.9947 -1.1525 13 6 0.8005 -6.1128 -2.3014 14 6 0.9605 -7.4527 -2.9722 15 1 1.7033 -8.1504 -2.6147 16 6 0.1578 -7.7883 -4.0420 17 7 0.2978 -8.9574 -4.6277 18 14 -1.1275 -6.5819 -4.6600 19 1 -0.5279 -5.7106 -5.7022 20 1 -2.2715 -7.3310 -5.2390 21 1 -1.6048 -5.7451 -3.5298 22 8 2.2958 -3.5321 -0.8202 23 1 -0.3634 0.0035 1.0277 24 1 -0.3634 0.8883 -0.5168 25 1 -0.3633 -0.8917 -0.5108 26 1 4.5117 -1.3338 -0.0078 27 1 0.4425 -2.5953 1.6427 28 1 2.8170 -6.0867 -1.5440 29 1 1.6212 -6.7878 -0.4275 30 1 -0.2126 -6.0208 -1.9099 31 1 0.9833 -5.3197 -3.0264 32 1 -0.2671 -9.1938 -5.3800 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259639239.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:48:21 Heat of formation + Delta-G solvation = 82.055129 kcal Electronic energy + Delta-G solvation = -16856.113321 eV Core-core repulsion = 14012.732625 eV Total energy + Delta-G solvation = -2843.380697 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 247.106 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -42.89378 -41.36744 -34.57457 -34.11873 -33.32868 -32.11660 -31.13235 -28.34541 -28.00577 -25.59644 -22.58787 -22.06280 -21.06426 -20.12677 -19.92094 -18.42904 -17.05338 -16.17349 -16.13422 -15.13511 -14.72491 -14.53805 -14.23488 -13.57599 -13.22066 -13.07236 -12.97567 -12.81990 -12.63379 -12.31867 -11.64043 -11.11928 -11.03454 -10.97431 -10.38478 -10.21818 -10.12686 -9.81877 -9.71151 -9.33372 -9.28711 -8.57146 -7.97820 -6.08101 -4.07686 1.32480 1.73984 2.34014 2.50680 3.05671 3.20896 3.31220 3.38801 3.44275 4.32577 4.43661 4.50597 4.58389 4.96158 5.14234 5.26213 5.28755 5.40226 5.46467 5.59208 5.69598 6.02020 6.06618 6.19264 6.23026 6.37186 6.47407 6.74378 6.88432 7.14418 7.27475 7.31494 7.69876 8.16477 8.45343 8.94593 9.53371 11.04743 Molecular weight = 247.11amu Principal moments of inertia in cm(-1) A = 0.032198 B = 0.004806 C = 0.004610 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 869.418030 B = 5824.967842 C = 6072.178452 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C 0.109 3.891 3 N -0.293 5.293 4 N -0.472 5.472 5 H 0.444 0.556 6 C 0.091 3.909 7 C -0.162 4.162 8 C 0.006 3.994 9 C -0.022 4.022 10 N -0.493 5.493 11 C 0.220 3.780 12 C -0.015 4.015 13 C -0.008 4.008 14 C -0.524 4.524 15 H 0.077 0.923 16 C 0.072 3.928 17 N -0.900 5.900 18 Si 0.876 3.124 19 H -0.276 1.276 20 H -0.286 1.286 21 H -0.264 1.264 22 O -0.199 6.199 23 H 0.083 0.917 24 H 0.077 0.923 25 H 0.082 0.918 26 H 0.185 0.815 27 H 0.178 0.822 28 H 0.086 0.914 29 H 0.102 0.898 30 H 0.026 0.974 31 H 0.016 0.984 32 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.427 18.608 10.315 21.957 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.059 4.059 3 N -0.117 5.117 4 N -0.179 5.179 5 H 0.288 0.712 6 C -0.058 4.058 7 C -0.174 4.174 8 C -0.048 4.048 9 C -0.161 4.161 10 N -0.220 5.220 11 C 0.015 3.985 12 C -0.053 4.053 13 C -0.046 4.046 14 C -0.562 4.562 15 H 0.095 0.905 16 C -0.130 4.130 17 N -0.538 5.538 18 Si 0.703 3.297 19 H -0.202 1.202 20 H -0.212 1.212 21 H -0.189 1.189 22 O -0.087 6.087 23 H 0.101 0.899 24 H 0.096 0.904 25 H 0.101 0.899 26 H 0.202 0.798 27 H 0.195 0.805 28 H 0.104 0.896 29 H 0.120 0.880 30 H 0.045 0.955 31 H 0.034 0.966 32 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 5.034 19.309 10.417 22.510 hybrid contribution 0.268 0.512 -0.745 0.943 sum 5.302 19.821 9.672 22.683 Atomic orbital electron populations 1.20300 0.85978 1.04015 1.03526 1.22453 0.97233 0.88828 0.97399 1.77215 0.86541 1.22080 1.25836 1.46076 1.07480 1.05291 1.59021 0.71180 1.22769 0.99156 0.85219 0.98633 1.17458 0.91934 0.88494 1.19560 1.20256 1.01997 0.87774 0.94817 1.23204 1.00620 0.90463 1.01852 1.70445 1.22200 1.15319 1.14081 1.27181 0.89210 0.89444 0.92709 1.20371 1.02831 0.83744 0.98356 1.19606 0.94420 0.98264 0.92303 1.20991 1.20733 0.99711 1.14726 0.90508 1.24952 0.96904 0.95071 0.96105 1.69894 1.39942 1.20977 1.22986 0.86821 0.81714 0.81582 0.79534 1.20227 1.21178 1.18871 1.84514 1.55958 1.18509 1.49681 0.89873 0.90396 0.89893 0.79849 0.80486 0.89563 0.87987 0.95539 0.96608 0.92575 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.78 10.12 36.01 0.36 -0.42 16 2 C 0.11 1.32 7.26 -82.05 -0.60 0.72 16 3 N -0.29 -3.47 12.66 33.87 0.43 -3.04 16 4 N -0.47 -4.21 7.33 30.68 0.22 -3.99 16 5 H 0.44 2.25 8.96 -182.66 -1.64 0.61 16 6 C 0.09 0.91 11.96 -16.79 -0.20 0.71 16 7 C -0.16 -2.09 6.00 -105.42 -0.63 -2.73 16 8 C 0.01 0.09 6.85 -36.48 -0.25 -0.16 16 9 C -0.02 -0.34 11.70 -17.41 -0.20 -0.54 16 10 N -0.49 -9.26 11.27 -10.80 -0.12 -9.38 16 11 C 0.22 4.19 7.58 -12.93 -0.10 4.10 16 12 C -0.01 -0.29 5.78 -27.88 -0.16 -0.46 16 13 C -0.01 -0.18 4.02 -27.88 -0.11 -0.30 16 14 C -0.52 -14.61 9.66 -34.44 -0.33 -14.94 16 15 H 0.08 2.25 7.99 -52.49 -0.42 1.83 16 16 C 0.07 2.07 5.47 -17.82 -0.10 1.97 16 17 N -0.90 -27.38 13.96 55.43 0.77 -26.60 16 18 Si 0.88 21.77 27.47 -169.99 -4.67 17.10 16 19 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 20 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 21 H -0.26 -6.42 6.54 56.52 0.37 -6.05 16 22 O -0.20 -3.57 10.80 4.15 0.04 -3.53 16 23 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 24 H 0.08 0.68 8.14 -51.93 -0.42 0.25 16 25 H 0.08 0.88 7.99 -51.93 -0.41 0.47 16 26 H 0.18 1.28 8.06 -52.49 -0.42 0.86 16 27 H 0.18 2.18 8.06 -52.49 -0.42 1.75 16 28 H 0.09 1.58 8.14 -51.93 -0.42 1.15 16 29 H 0.10 1.95 8.14 -51.93 -0.42 1.52 16 30 H 0.03 0.65 7.20 -51.93 -0.37 0.28 16 31 H 0.02 0.38 7.57 -51.93 -0.39 -0.02 16 32 H 0.26 7.53 8.31 -40.82 -0.34 7.20 16 LS Contribution 287.37 15.07 4.33 4.33 Total: -1.00 -33.77 287.37 -6.25 -40.02 By element: Atomic # 1 Polarization: 2.08 SS G_CDS: -4.94 Total: -2.86 kcal Atomic # 6 Polarization: -9.73 SS G_CDS: -2.32 Total: -12.05 kcal Atomic # 7 Polarization: -44.32 SS G_CDS: 1.31 Total: -43.02 kcal Atomic # 8 Polarization: -3.57 SS G_CDS: 0.04 Total: -3.53 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -4.67 Total: 17.10 kcal Total LS contribution 4.33 Total: 4.33 kcal Total: -33.77 -6.25 -40.02 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259639239.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.075 kcal (2) G-P(sol) polarization free energy of solvation -33.769 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 88.305 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.250 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.020 kcal (6) G-S(sol) free energy of system = (1) + (5) 82.055 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds