Wall clock time and date at job start Mon Mar 30 2020 05:48:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.30655 * 125.95066 * 2 1 4 4 N 1.40003 * 108.57966 * 180.27406 * 3 2 1 5 5 H 0.97007 * 125.87965 * 179.68854 * 4 3 2 6 6 C 1.34890 * 108.24250 * 359.71671 * 4 3 2 7 7 C 1.36617 * 107.57334 * 359.97438 * 6 4 3 8 8 C 1.48035 * 126.25025 * 180.02562 * 7 6 4 9 9 C 1.35673 * 126.57091 * 130.02554 * 8 7 6 10 10 N 1.34254 * 107.52458 * 180.02562 * 9 8 7 11 11 C 1.30294 * 108.88427 * 359.97438 * 10 9 8 12 12 C 1.50705 * 125.49132 * 180.02562 * 11 10 9 13 13 C 1.53002 * 109.46724 * 89.97669 * 12 11 10 14 14 C 1.50697 * 109.46720 * 179.97438 * 13 12 11 15 15 H 1.07999 * 120.00297 * 0.02562 * 14 13 12 16 16 C 1.37886 * 119.99733 * 179.97438 * 14 13 12 17 17 N 1.31510 * 119.99833 * 179.97438 * 16 14 13 18 18 Si 1.86802 * 120.00026 * 0.02562 * 16 14 13 19 19 H 1.48494 * 109.47343 * 89.99642 * 18 16 14 20 20 H 1.48503 * 109.46809 * 209.99847 * 18 16 14 21 21 H 1.48499 * 109.46984 * 329.99611 * 18 16 14 22 22 O 1.34099 * 109.01145 * 0.02562 * 11 10 9 23 23 H 1.09007 * 109.47295 * 270.19678 * 1 2 3 24 24 H 1.09005 * 109.47368 * 30.19319 * 1 2 3 25 25 H 1.08996 * 109.47128 * 150.19491 * 1 2 3 26 26 H 1.07997 * 126.21627 * 179.97438 * 6 4 3 27 27 H 1.07998 * 126.23594 * 0.03418 * 9 8 7 28 28 H 1.08991 * 109.46928 * 209.97885 * 12 11 10 29 29 H 1.09001 * 109.47295 * 329.97939 * 12 11 10 30 30 H 1.09000 * 109.47329 * 299.99853 * 13 12 11 31 31 H 1.09001 * 109.47014 * 60.00098 * 13 12 11 32 32 H 0.96998 * 120.00289 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2740 1.0577 0.0000 4 7 3.6102 0.6397 -0.0063 5 1 4.3875 1.2201 -0.0120 6 6 3.6307 -0.7090 -0.0039 7 6 2.3348 -1.1413 0.0045 8 6 1.8822 -2.5507 0.0103 9 6 0.9725 -3.1041 0.8512 10 7 0.8513 -4.3995 0.5197 11 6 1.6444 -4.6545 -0.4820 12 6 1.8040 -5.9947 -1.1525 13 6 0.8005 -6.1128 -2.3014 14 6 0.9605 -7.4527 -2.9722 15 1 1.7033 -8.1504 -2.6147 16 6 0.1578 -7.7883 -4.0420 17 7 0.2978 -8.9574 -4.6277 18 14 -1.1275 -6.5819 -4.6600 19 1 -0.5279 -5.7106 -5.7022 20 1 -2.2715 -7.3310 -5.2390 21 1 -1.6048 -5.7451 -3.5298 22 8 2.2958 -3.5321 -0.8202 23 1 -0.3634 0.0035 1.0277 24 1 -0.3634 0.8883 -0.5168 25 1 -0.3633 -0.8917 -0.5108 26 1 4.5117 -1.3338 -0.0078 27 1 0.4425 -2.5953 1.6427 28 1 2.8170 -6.0867 -1.5440 29 1 1.6212 -6.7878 -0.4275 30 1 -0.2126 -6.0208 -1.9099 31 1 0.9833 -5.3197 -3.0264 32 1 -0.2671 -9.1938 -5.3800 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259639239.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:48:21 Heat of formation + Delta-G solvation = 57.191911 kcal Electronic energy + Delta-G solvation = -16857.191471 eV Core-core repulsion = 14012.732625 eV Total energy + Delta-G solvation = -2844.458847 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 247.106 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -44.19190 -42.21150 -36.22703 -35.59492 -34.37782 -33.76703 -32.38131 -29.62571 -28.93190 -27.22420 -23.82338 -23.56147 -22.36079 -21.53645 -20.81404 -19.32823 -19.04523 -17.58065 -17.43342 -16.30619 -15.98257 -15.84442 -15.35184 -15.20116 -14.77990 -14.54615 -14.11907 -13.91187 -13.71648 -13.47321 -13.09862 -12.93734 -12.49061 -12.07612 -12.02101 -11.91826 -11.76363 -11.57976 -11.43327 -10.76999 -10.51072 -10.39848 -9.11887 -8.29577 -6.33842 0.26031 0.78657 1.29996 1.35324 1.37831 1.49323 1.66973 1.84594 2.06588 2.35724 3.05841 3.19995 3.51214 3.76115 4.03618 4.14914 4.24106 4.43229 4.49495 4.60065 4.67559 4.74773 4.83522 4.90325 5.01658 5.06565 5.26379 5.34573 5.42120 5.45133 5.60926 6.24284 6.24460 6.51677 6.72957 6.84159 7.30801 8.86399 Molecular weight = 247.11amu Principal moments of inertia in cm(-1) A = 0.032198 B = 0.004806 C = 0.004610 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 869.418030 B = 5824.967842 C = 6072.178452 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C 0.104 3.896 3 N -0.315 5.315 4 N -0.455 5.455 5 H 0.461 0.539 6 C 0.114 3.886 7 C -0.204 4.204 8 C 0.024 3.976 9 C -0.033 4.033 10 N -0.507 5.507 11 C 0.197 3.803 12 C -0.005 4.005 13 C -0.001 4.001 14 C -0.530 4.530 15 H 0.049 0.951 16 C 0.014 3.986 17 N -0.944 5.944 18 Si 0.940 3.060 19 H -0.267 1.267 20 H -0.280 1.280 21 H -0.256 1.256 22 O -0.209 6.209 23 H 0.101 0.899 24 H 0.086 0.914 25 H 0.071 0.929 26 H 0.215 0.785 27 H 0.207 0.793 28 H 0.096 0.904 29 H 0.103 0.897 30 H 0.019 0.981 31 H 0.017 0.983 32 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.604 21.136 10.945 24.452 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.064 4.064 3 N -0.138 5.138 4 N -0.163 5.163 5 H 0.309 0.691 6 C -0.037 4.037 7 C -0.216 4.216 8 C -0.030 4.030 9 C -0.172 4.172 10 N -0.236 5.236 11 C -0.009 4.009 12 C -0.043 4.043 13 C -0.039 4.039 14 C -0.568 4.568 15 H 0.067 0.933 16 C -0.184 4.184 17 N -0.584 5.584 18 Si 0.764 3.236 19 H -0.192 1.192 20 H -0.205 1.205 21 H -0.180 1.180 22 O -0.096 6.096 23 H 0.119 0.881 24 H 0.105 0.895 25 H 0.090 0.910 26 H 0.232 0.768 27 H 0.223 0.777 28 H 0.115 0.885 29 H 0.121 0.879 30 H 0.037 0.963 31 H 0.035 0.965 32 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 5.237 21.878 11.055 25.066 hybrid contribution 0.333 -0.192 -0.876 0.957 sum 5.570 21.686 10.179 24.595 Atomic orbital electron populations 1.20369 0.84976 1.03859 1.04695 1.22733 0.98155 0.88523 0.96942 1.77188 0.87633 1.22295 1.26709 1.46139 1.07410 1.05379 1.57401 0.69079 1.23197 0.99159 0.85651 0.95679 1.17603 0.93542 0.87322 1.23131 1.20721 1.00815 0.88182 0.93291 1.23644 1.01349 0.89398 1.02823 1.70398 1.22049 1.17155 1.14037 1.26703 0.90804 0.89499 0.93885 1.20058 1.02151 0.84924 0.97129 1.19449 0.95253 0.95787 0.93456 1.21312 1.19714 1.01002 1.14765 0.93280 1.25825 0.99238 0.96799 0.96498 1.70024 1.41446 1.23033 1.23929 0.85806 0.79096 0.79410 0.79285 1.19166 1.20543 1.17957 1.84490 1.56119 1.18775 1.50232 0.88055 0.89491 0.91022 0.76834 0.77657 0.88535 0.87873 0.96265 0.96482 0.92316 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.43 10.12 71.24 0.72 -0.71 16 2 C 0.10 2.29 7.26 43.41 0.31 2.61 16 3 N -0.31 -6.67 12.66 -46.77 -0.59 -7.26 16 4 N -0.46 -6.71 7.33 -56.84 -0.42 -7.13 16 5 H 0.46 3.13 8.96 -213.37 -1.91 1.22 16 6 C 0.11 1.90 11.96 83.84 1.00 2.90 16 7 C -0.20 -4.78 6.00 -20.38 -0.12 -4.90 16 8 C 0.02 0.69 6.85 24.28 0.17 0.85 16 9 C -0.03 -0.97 11.70 83.73 0.98 0.01 16 10 N -0.51 -18.57 11.27 -302.80 -3.41 -21.99 16 11 C 0.20 7.34 7.58 88.34 0.67 8.01 16 12 C 0.00 -0.18 5.78 29.85 0.17 -0.01 16 13 C 0.00 -0.05 4.02 29.85 0.12 0.07 16 14 C -0.53 -30.04 9.66 25.60 0.25 -29.79 16 15 H 0.05 2.97 7.99 -2.91 -0.02 2.95 16 16 C 0.01 0.82 5.47 84.66 0.46 1.29 16 17 N -0.94 -58.47 13.96 21.45 0.30 -58.17 16 18 Si 0.94 44.74 27.47 68.60 1.88 46.63 16 19 H -0.27 -12.19 7.11 99.48 0.71 -11.49 16 20 H -0.28 -12.96 7.11 99.48 0.71 -12.25 16 21 H -0.26 -11.71 6.54 99.48 0.65 -11.06 16 22 O -0.21 -7.23 10.80 -8.08 -0.09 -7.32 16 23 H 0.10 1.39 8.14 -2.38 -0.02 1.37 16 24 H 0.09 1.35 8.14 -2.38 -0.02 1.33 16 25 H 0.07 1.43 7.99 -2.39 -0.02 1.41 16 26 H 0.22 2.12 8.06 -2.91 -0.02 2.10 16 27 H 0.21 4.58 8.06 -2.91 -0.02 4.55 16 28 H 0.10 3.52 8.14 -2.39 -0.02 3.50 16 29 H 0.10 3.97 8.14 -2.39 -0.02 3.95 16 30 H 0.02 0.93 7.20 -2.39 -0.02 0.92 16 31 H 0.02 0.80 7.57 -2.39 -0.02 0.78 16 32 H 0.27 15.48 8.31 -92.71 -0.77 14.70 16 Total: -1.00 -72.51 287.37 1.59 -70.92 By element: Atomic # 1 Polarization: 4.80 SS G_CDS: -0.82 Total: 3.98 kcal Atomic # 6 Polarization: -24.40 SS G_CDS: 4.74 Total: -19.67 kcal Atomic # 7 Polarization: -90.42 SS G_CDS: -4.12 Total: -94.54 kcal Atomic # 8 Polarization: -7.23 SS G_CDS: -0.09 Total: -7.32 kcal Atomic # 14 Polarization: 44.74 SS G_CDS: 1.88 Total: 46.63 kcal Total: -72.51 1.59 -70.92 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259639239.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.114 kcal (2) G-P(sol) polarization free energy of solvation -72.511 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.603 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.589 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.922 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.192 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds