Wall clock time and date at job start Mon Mar 30 2020 05:49:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.35285 * 126.70043 * 2 1 4 4 C 1.41964 * 103.95361 * 179.97438 * 3 2 1 5 5 N 1.39915 * 126.88313 * 179.97438 * 4 3 2 6 6 C 1.35834 * 126.10342 * 179.97438 * 5 4 3 7 7 C 1.35268 * 107.61578 * 180.02562 * 6 5 4 8 8 C 1.39954 * 107.97127 * 0.02562 * 7 6 5 9 9 C 1.50699 * 125.81924 * 180.02562 * 8 7 6 10 10 C 1.52999 * 109.47353 * 124.99656 * 9 8 7 11 11 C 1.50708 * 109.46991 * 179.97438 * 10 9 8 12 12 H 1.08002 * 119.99972 * 0.02562 * 11 10 9 13 13 C 1.37873 * 119.99859 * 180.02562 * 11 10 9 14 14 N 1.31513 * 120.00000 * 179.97438 * 13 11 10 15 15 Si 1.86802 * 120.00175 * 359.97438 * 13 11 10 16 16 H 1.48504 * 109.47005 * 90.00081 * 15 13 11 17 17 H 1.48497 * 109.47558 * 210.00561 * 15 13 11 18 18 H 1.48503 * 109.47242 * 330.00877 * 15 13 11 19 19 N 1.30818 * 108.36670 * 359.71910 * 8 7 6 20 20 N 1.30664 * 106.22928 * 359.97438 * 4 3 2 21 21 O 1.20913 * 111.49209 * 0.02562 * 20 4 3 22 22 H 1.09006 * 109.47000 * 90.00428 * 1 2 3 23 23 H 1.09000 * 109.47420 * 210.00134 * 1 2 3 24 24 H 1.09003 * 109.47869 * 330.00734 * 1 2 3 25 25 H 1.07997 * 128.02483 * 359.69397 * 3 2 1 26 26 H 1.08006 * 126.19201 * 359.97438 * 6 5 4 27 27 H 1.08001 * 126.01611 * 180.02562 * 7 6 5 28 28 H 1.09006 * 109.47063 * 244.99779 * 9 8 7 29 29 H 1.09003 * 109.47203 * 4.99492 * 9 8 7 30 30 H 1.08991 * 109.47446 * 299.99785 * 10 9 8 31 31 H 1.08998 * 109.46868 * 60.00475 * 10 9 8 32 32 H 0.97003 * 120.00104 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3154 1.0847 0.0000 4 6 3.6247 0.5358 0.0006 5 7 4.8318 1.2431 0.0004 6 6 6.0773 0.7009 0.0014 7 6 6.9672 1.7196 0.0013 8 6 6.2488 2.9207 0.0007 9 6 6.8447 4.3048 -0.0002 10 6 6.2864 5.0997 -1.1823 11 6 6.8820 6.4842 -1.1827 12 1 7.5884 6.7684 -0.4168 13 6 6.5250 7.3878 -2.1609 14 7 7.0443 8.5961 -2.1611 15 14 5.3038 6.8960 -3.4861 16 1 3.9264 7.2187 -3.0343 17 1 5.6022 7.6410 -4.7355 18 1 5.4117 5.4371 -3.7419 19 7 4.9717 2.6371 -0.0056 20 7 3.4764 -0.7624 0.0015 21 8 2.3083 -1.0749 0.0010 22 1 -0.3633 -0.0001 -1.0277 23 1 -0.3634 -0.8900 0.5138 24 1 -0.3635 0.8900 0.5137 25 1 2.0309 2.1265 -0.0045 26 1 6.3141 -0.3528 0.0031 27 1 8.0429 1.6231 0.0016 28 1 6.5896 4.8109 0.9309 29 1 7.9287 4.2336 -0.0898 30 1 6.5416 4.5938 -2.1133 31 1 5.2025 5.1710 -1.0926 32 1 6.7935 9.2317 -2.8495 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259645529.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:49:14 Heat of formation + Delta-G solvation = 136.679440 kcal Electronic energy + Delta-G solvation = -16779.069784 eV Core-core repulsion = 13938.057776 eV Total energy + Delta-G solvation = -2841.012009 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 247.106 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -45.20640 -41.15780 -35.40135 -34.05958 -33.55373 -31.93755 -30.07356 -29.85578 -28.10131 -25.99937 -23.50260 -22.77057 -20.99872 -20.10472 -19.19550 -18.00951 -17.85216 -16.94224 -16.54707 -15.04040 -14.46516 -14.19029 -14.14714 -13.94658 -13.60557 -13.34975 -13.20813 -12.76610 -12.58210 -12.43376 -11.69397 -11.54027 -11.14585 -10.95052 -10.66701 -10.05287 -9.95503 -9.69111 -9.68096 -9.19627 -9.01203 -8.51585 -8.39307 -6.03109 -4.01161 0.96335 1.43112 2.01673 2.62617 2.81589 2.96116 3.33739 3.40500 3.47008 3.89242 4.40299 4.47964 4.64805 4.79992 4.92558 5.02990 5.05944 5.31301 5.32058 5.41758 5.58378 5.73775 5.76853 6.00979 6.30996 6.37425 6.59924 6.89119 7.02421 7.30765 7.40723 7.70280 7.79399 8.05424 8.53080 9.01135 9.59744 11.10126 Molecular weight = 247.11amu Principal moments of inertia in cm(-1) A = 0.026430 B = 0.005070 C = 0.004433 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1059.159490 B = 5521.522165 C = 6315.337589 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C -0.018 4.018 3 C -0.219 4.219 4 C 0.279 3.721 5 N -0.318 5.318 6 C 0.057 3.943 7 C -0.247 4.247 8 C 0.112 3.888 9 C -0.031 4.031 10 C -0.007 4.007 11 C -0.521 4.521 12 H 0.075 0.925 13 C 0.069 3.931 14 N -0.903 5.903 15 Si 0.877 3.123 16 H -0.277 1.277 17 H -0.288 1.288 18 H -0.266 1.266 19 N -0.271 5.271 20 N -0.383 5.383 21 O 0.104 5.896 22 H 0.091 0.909 23 H 0.086 0.914 24 H 0.095 0.905 25 H 0.182 0.818 26 H 0.176 0.824 27 H 0.159 0.841 28 H 0.079 0.921 29 H 0.081 0.919 30 H 0.016 0.984 31 H 0.019 0.981 32 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.766 -19.007 4.755 22.356 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.081 4.081 3 C -0.241 4.241 4 C 0.032 3.968 5 N -0.099 5.099 6 C -0.083 4.083 7 C -0.276 4.276 8 C -0.058 4.058 9 C -0.070 4.070 10 C -0.045 4.045 11 C -0.559 4.559 12 H 0.093 0.907 13 C -0.132 4.132 14 N -0.542 5.542 15 Si 0.705 3.295 16 H -0.202 1.202 17 H -0.214 1.214 18 H -0.191 1.191 19 N -0.090 5.090 20 N -0.095 5.095 21 O 0.041 5.959 22 H 0.110 0.890 23 H 0.104 0.896 24 H 0.114 0.886 25 H 0.200 0.800 26 H 0.193 0.807 27 H 0.176 0.824 28 H 0.098 0.902 29 H 0.100 0.900 30 H 0.035 0.965 31 H 0.038 0.962 32 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -11.219 -19.515 4.656 22.986 hybrid contribution -0.002 0.235 -0.809 0.842 sum -11.221 -19.280 3.847 22.637 Atomic orbital electron populations 1.20384 0.83272 1.04952 1.04466 1.24351 0.96530 0.85485 1.01754 1.22215 0.89054 1.02045 1.10826 1.19859 0.86267 0.88212 1.02510 1.44861 1.01346 1.05123 1.58585 1.22777 0.83475 1.00217 1.01845 1.21665 1.00827 0.90812 1.14264 1.23319 0.90007 0.98203 0.94264 1.20252 0.99418 0.85491 1.01831 1.19545 0.96579 0.95529 0.92844 1.21112 1.26607 0.95046 1.13134 0.90716 1.24971 0.95937 0.94745 0.97551 1.69909 1.44167 1.05258 1.34868 0.86808 0.81960 0.79151 0.81590 1.20245 1.21389 1.19088 1.77659 1.19458 0.86013 1.25916 1.74021 0.97658 1.12759 1.25090 1.84828 1.10189 1.32275 1.68566 0.89045 0.89558 0.88626 0.80034 0.80691 0.82353 0.90224 0.90027 0.96537 0.96231 0.92728 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.37 10.45 36.00 0.38 0.01 16 2 C -0.02 -0.18 7.48 -35.36 -0.26 -0.44 16 3 C -0.22 -2.82 11.01 -39.21 -0.43 -3.25 16 4 C 0.28 4.36 8.02 -154.48 -1.24 3.12 16 5 N -0.32 -5.53 3.81 -12.12 -0.05 -5.58 16 6 C 0.06 0.86 11.39 -16.84 -0.19 0.67 16 7 C -0.25 -3.87 10.72 -40.00 -0.43 -4.30 16 8 C 0.11 2.11 6.49 -82.38 -0.53 1.57 16 9 C -0.03 -0.61 5.73 -27.88 -0.16 -0.77 16 10 C -0.01 -0.17 4.00 -27.88 -0.11 -0.28 16 11 C -0.52 -14.88 9.66 -34.44 -0.33 -15.21 16 12 H 0.07 2.24 7.99 -52.49 -0.42 1.82 16 13 C 0.07 2.04 5.47 -17.82 -0.10 1.94 16 14 N -0.90 -27.96 13.96 55.43 0.77 -27.18 16 15 Si 0.88 22.31 27.47 -169.99 -4.67 17.65 16 16 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 17 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 18 H -0.27 -6.66 6.54 56.52 0.37 -6.29 16 19 N -0.27 -5.33 12.41 33.68 0.42 -4.92 16 20 N -0.38 -5.53 11.99 31.25 0.37 -5.15 16 21 O 0.10 1.24 11.19 17.10 0.19 1.43 16 22 H 0.09 0.36 8.14 -51.93 -0.42 -0.06 16 23 H 0.09 0.30 8.14 -51.93 -0.42 -0.12 16 24 H 0.10 0.37 8.14 -51.93 -0.42 -0.05 16 25 H 0.18 2.22 8.06 -52.49 -0.42 1.80 16 26 H 0.18 2.09 8.06 -52.48 -0.42 1.67 16 27 H 0.16 2.00 8.06 -52.49 -0.42 1.57 16 28 H 0.08 1.57 8.14 -51.93 -0.42 1.15 16 29 H 0.08 1.51 8.12 -51.93 -0.42 1.09 16 30 H 0.02 0.41 7.20 -51.93 -0.37 0.04 16 31 H 0.02 0.49 7.57 -51.93 -0.39 0.10 16 32 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 LS Contribution 287.92 15.07 4.34 4.34 Total: -1.00 -33.91 287.92 -5.77 -39.68 By element: Atomic # 1 Polarization: 0.41 SS G_CDS: -3.73 Total: -3.32 kcal Atomic # 6 Polarization: -13.53 SS G_CDS: -3.42 Total: -16.94 kcal Atomic # 7 Polarization: -44.35 SS G_CDS: 1.52 Total: -42.83 kcal Atomic # 8 Polarization: 1.24 SS G_CDS: 0.19 Total: 1.43 kcal Atomic # 14 Polarization: 22.31 SS G_CDS: -4.67 Total: 17.65 kcal Total LS contribution 4.34 Total: 4.34 kcal Total: -33.91 -5.77 -39.68 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259645529.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 176.360 kcal (2) G-P(sol) polarization free energy of solvation -33.912 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 142.447 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.768 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.680 kcal (6) G-S(sol) free energy of system = (1) + (5) 136.679 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds