Wall clock time and date at job start Mon Mar 30 2020 05:49:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.35285 * 126.70043 * 2 1 4 4 C 1.41964 * 103.95361 * 179.97438 * 3 2 1 5 5 N 1.39915 * 126.88313 * 179.97438 * 4 3 2 6 6 C 1.35834 * 126.10342 * 179.97438 * 5 4 3 7 7 C 1.35268 * 107.61578 * 180.02562 * 6 5 4 8 8 C 1.39954 * 107.97127 * 0.02562 * 7 6 5 9 9 C 1.50699 * 125.81924 * 180.02562 * 8 7 6 10 10 C 1.52999 * 109.47353 * 124.99656 * 9 8 7 11 11 C 1.50708 * 109.46991 * 179.97438 * 10 9 8 12 12 H 1.08002 * 119.99972 * 0.02562 * 11 10 9 13 13 C 1.37873 * 119.99859 * 180.02562 * 11 10 9 14 14 N 1.31513 * 120.00000 * 179.97438 * 13 11 10 15 15 Si 1.86802 * 120.00175 * 359.97438 * 13 11 10 16 16 H 1.48504 * 109.47005 * 90.00081 * 15 13 11 17 17 H 1.48497 * 109.47558 * 210.00561 * 15 13 11 18 18 H 1.48503 * 109.47242 * 330.00877 * 15 13 11 19 19 N 1.30818 * 108.36670 * 359.71910 * 8 7 6 20 20 N 1.30664 * 106.22928 * 359.97438 * 4 3 2 21 21 O 1.20913 * 111.49209 * 0.02562 * 20 4 3 22 22 H 1.09006 * 109.47000 * 90.00428 * 1 2 3 23 23 H 1.09000 * 109.47420 * 210.00134 * 1 2 3 24 24 H 1.09003 * 109.47869 * 330.00734 * 1 2 3 25 25 H 1.07997 * 128.02483 * 359.69397 * 3 2 1 26 26 H 1.08006 * 126.19201 * 359.97438 * 6 5 4 27 27 H 1.08001 * 126.01611 * 180.02562 * 7 6 5 28 28 H 1.09006 * 109.47063 * 244.99779 * 9 8 7 29 29 H 1.09003 * 109.47203 * 4.99492 * 9 8 7 30 30 H 1.08991 * 109.47446 * 299.99785 * 10 9 8 31 31 H 1.08998 * 109.46868 * 60.00475 * 10 9 8 32 32 H 0.97003 * 120.00104 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3154 1.0847 0.0000 4 6 3.6247 0.5358 0.0006 5 7 4.8318 1.2431 0.0004 6 6 6.0773 0.7009 0.0014 7 6 6.9672 1.7196 0.0013 8 6 6.2488 2.9207 0.0007 9 6 6.8447 4.3048 -0.0002 10 6 6.2864 5.0997 -1.1823 11 6 6.8820 6.4842 -1.1827 12 1 7.5884 6.7684 -0.4168 13 6 6.5250 7.3878 -2.1609 14 7 7.0443 8.5961 -2.1611 15 14 5.3038 6.8960 -3.4861 16 1 3.9264 7.2187 -3.0343 17 1 5.6022 7.6410 -4.7355 18 1 5.4117 5.4371 -3.7419 19 7 4.9717 2.6371 -0.0056 20 7 3.4764 -0.7624 0.0015 21 8 2.3083 -1.0749 0.0010 22 1 -0.3633 -0.0001 -1.0277 23 1 -0.3634 -0.8900 0.5138 24 1 -0.3635 0.8900 0.5137 25 1 2.0309 2.1265 -0.0045 26 1 6.3141 -0.3528 0.0031 27 1 8.0429 1.6231 0.0016 28 1 6.5896 4.8109 0.9309 29 1 7.9287 4.2336 -0.0898 30 1 6.5416 4.5938 -2.1133 31 1 5.2025 5.1710 -1.0926 32 1 6.7935 9.2317 -2.8495 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259645529.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:49:13 Heat of formation + Delta-G solvation = 116.033674 kcal Electronic energy + Delta-G solvation = -16779.965052 eV Core-core repulsion = 13938.057776 eV Total energy + Delta-G solvation = -2841.907276 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 247.106 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -46.21184 -42.43452 -36.73289 -35.52653 -34.65930 -33.74288 -31.42012 -31.29840 -28.77026 -27.81854 -24.70996 -23.99132 -22.73035 -21.25178 -20.64232 -19.01569 -18.95709 -18.78971 -17.81807 -16.49416 -16.16777 -15.63185 -15.30396 -15.02882 -14.80993 -14.56812 -14.27712 -14.00536 -13.97942 -13.48140 -13.39738 -13.01198 -12.48269 -12.44812 -12.18538 -11.86971 -11.72687 -11.49819 -11.38119 -10.77291 -10.55174 -10.35242 -9.61181 -8.30350 -6.33332 -0.10945 0.48341 0.84931 1.32488 1.33590 1.44893 1.46203 1.65582 2.00516 2.34115 2.91239 3.05124 3.32975 3.69655 3.79882 3.87450 4.15566 4.32048 4.55079 4.60118 4.67308 4.72589 4.74445 4.80189 4.85150 5.00799 5.19303 5.32530 5.45703 5.49632 5.65729 5.87871 6.26134 6.42851 6.73799 7.02910 7.31277 8.86021 Molecular weight = 247.11amu Principal moments of inertia in cm(-1) A = 0.026430 B = 0.005070 C = 0.004433 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1059.159490 B = 5521.522165 C = 6315.337589 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C 0.014 3.986 3 C -0.247 4.247 4 C 0.245 3.755 5 N -0.324 5.324 6 C 0.061 3.939 7 C -0.248 4.248 8 C 0.093 3.907 9 C -0.021 4.021 10 C 0.001 3.999 11 C -0.529 4.529 12 H 0.046 0.954 13 C 0.013 3.987 14 N -0.946 5.946 15 Si 0.942 3.058 16 H -0.268 1.268 17 H -0.279 1.279 18 H -0.260 1.260 19 N -0.305 5.305 20 N -0.393 5.393 21 O 0.111 5.889 22 H 0.110 0.890 23 H 0.109 0.891 24 H 0.110 0.890 25 H 0.182 0.818 26 H 0.207 0.793 27 H 0.188 0.812 28 H 0.076 0.924 29 H 0.096 0.904 30 H 0.013 0.987 31 H 0.011 0.989 32 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.491 -21.344 4.321 25.105 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.050 4.050 3 C -0.271 4.271 4 C -0.001 4.001 5 N -0.105 5.105 6 C -0.079 4.079 7 C -0.276 4.276 8 C -0.076 4.076 9 C -0.060 4.060 10 C -0.037 4.037 11 C -0.567 4.567 12 H 0.065 0.935 13 C -0.185 4.185 14 N -0.586 5.586 15 Si 0.766 3.234 16 H -0.194 1.194 17 H -0.204 1.204 18 H -0.184 1.184 19 N -0.126 5.126 20 N -0.104 5.104 21 O 0.047 5.953 22 H 0.128 0.872 23 H 0.127 0.873 24 H 0.129 0.871 25 H 0.199 0.801 26 H 0.224 0.776 27 H 0.205 0.795 28 H 0.094 0.906 29 H 0.114 0.886 30 H 0.031 0.969 31 H 0.029 0.971 32 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -12.932 -21.859 4.232 25.748 hybrid contribution 0.447 0.887 -0.603 1.162 sum -12.485 -20.972 3.629 24.675 Atomic orbital electron populations 1.20716 0.79353 1.06812 1.06155 1.25118 0.98101 0.83704 0.98099 1.22390 0.88728 1.02977 1.12967 1.20237 0.86589 0.88971 1.04313 1.44947 1.02655 1.04533 1.58361 1.23344 0.82580 1.01610 1.00356 1.21954 1.02316 0.89413 1.13964 1.23137 0.90492 0.98303 0.95692 1.20010 1.00172 0.86114 0.99726 1.19389 0.95837 0.93837 0.94635 1.21437 1.25937 0.97095 1.12216 0.93548 1.25834 0.97917 0.94665 1.00062 1.70036 1.45939 1.06517 1.36153 0.85783 0.79649 0.79093 0.78853 1.19369 1.20397 1.18404 1.77534 1.20126 0.87900 1.27006 1.74016 0.98872 1.12223 1.25289 1.84797 1.09825 1.32833 1.67834 0.87156 0.87286 0.87131 0.80103 0.77613 0.79471 0.90554 0.88560 0.96908 0.97059 0.92390 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.46 10.45 71.23 0.74 0.28 16 2 C 0.01 0.24 7.48 25.00 0.19 0.42 16 3 C -0.25 -6.14 11.01 22.51 0.25 -5.90 16 4 C 0.24 7.46 8.02 133.96 1.07 8.53 16 5 N -0.32 -11.05 3.81 -193.33 -0.74 -11.78 16 6 C 0.06 1.76 11.39 83.39 0.95 2.71 16 7 C -0.25 -7.38 10.72 22.00 0.24 -7.14 16 8 C 0.09 3.45 6.49 43.13 0.28 3.73 16 9 C -0.02 -0.85 5.73 29.85 0.17 -0.68 16 10 C 0.00 0.06 4.00 29.85 0.12 0.18 16 11 C -0.53 -30.82 9.66 25.60 0.25 -30.57 16 12 H 0.05 2.89 7.99 -2.91 -0.02 2.86 16 13 C 0.01 0.75 5.47 84.65 0.46 1.21 16 14 N -0.95 -59.58 13.96 21.45 0.30 -59.29 16 15 Si 0.94 46.12 27.47 68.60 1.88 48.01 16 16 H -0.27 -12.72 7.11 99.48 0.71 -12.01 16 17 H -0.28 -13.13 7.11 99.48 0.71 -12.42 16 18 H -0.26 -12.35 6.54 99.48 0.65 -11.70 16 19 N -0.30 -11.99 12.41 -47.34 -0.59 -12.58 16 20 N -0.39 -10.77 11.99 -56.17 -0.67 -11.44 16 21 O 0.11 2.41 11.19 71.36 0.80 3.21 16 22 H 0.11 0.40 8.14 -2.38 -0.02 0.39 16 23 H 0.11 0.27 8.14 -2.39 -0.02 0.25 16 24 H 0.11 0.46 8.14 -2.39 -0.02 0.44 16 25 H 0.18 4.39 8.06 -2.91 -0.02 4.36 16 26 H 0.21 4.39 8.06 -2.91 -0.02 4.37 16 27 H 0.19 4.24 8.06 -2.91 -0.02 4.22 16 28 H 0.08 3.07 8.14 -2.38 -0.02 3.05 16 29 H 0.10 3.53 8.12 -2.39 -0.02 3.51 16 30 H 0.01 0.63 7.20 -2.39 -0.02 0.61 16 31 H 0.01 0.56 7.57 -2.39 -0.02 0.54 16 32 H 0.27 15.68 8.31 -92.71 -0.77 14.91 16 Total: -1.00 -74.49 287.92 6.77 -67.71 By element: Atomic # 1 Polarization: 2.31 SS G_CDS: 1.07 Total: 3.38 kcal Atomic # 6 Polarization: -31.94 SS G_CDS: 4.72 Total: -27.22 kcal Atomic # 7 Polarization: -93.39 SS G_CDS: -1.70 Total: -95.09 kcal Atomic # 8 Polarization: 2.41 SS G_CDS: 0.80 Total: 3.21 kcal Atomic # 14 Polarization: 46.12 SS G_CDS: 1.88 Total: 48.01 kcal Total: -74.49 6.77 -67.71 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259645529.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 183.748 kcal (2) G-P(sol) polarization free energy of solvation -74.486 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 109.262 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.772 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.714 kcal (6) G-S(sol) free energy of system = (1) + (5) 116.034 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds