Wall clock time and date at job start Mon Mar 30 2020 06:18:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08999 * 109.47108 * 2 1 4 4 C 1.50702 * 109.47490 * 239.99371 * 2 1 3 5 5 H 1.07991 * 120.00063 * 239.99840 * 4 2 1 6 6 C 1.37880 * 119.99441 * 59.99661 * 4 2 1 7 7 N 1.31515 * 120.00369 * 0.02562 * 6 4 2 8 8 Si 1.86799 * 119.99716 * 180.02562 * 6 4 2 9 9 H 1.48507 * 109.47028 * 0.02562 * 8 6 4 10 10 H 1.48502 * 109.46963 * 120.00167 * 8 6 4 11 11 H 1.48504 * 109.47416 * 240.00371 * 8 6 4 12 12 C 1.53005 * 109.47271 * 119.99192 * 2 1 3 13 13 C 1.50697 * 109.47135 * 295.00479 * 12 2 1 14 14 C 1.34250 * 126.49218 * 264.96635 * 13 12 2 15 15 N 1.36791 * 109.93105 * 180.02562 * 14 13 12 16 16 H 0.97003 * 125.07324 * 180.26957 * 15 14 13 17 17 C 1.37785 * 109.85611 * 0.02562 * 15 14 13 18 18 C 1.40614 * 107.15909 * 359.97438 * 17 15 14 19 19 C 1.39661 * 119.94837 * 180.02562 * 18 17 15 20 20 C 1.36640 * 119.80574 * 0.02562 * 19 18 17 21 21 C 1.38798 * 120.54579 * 359.97232 * 20 19 18 22 22 C 1.37981 * 120.63478 * 0.03079 * 21 20 19 23 23 F 1.35101 * 120.13395 * 179.97438 * 22 21 20 24 24 H 1.08998 * 109.47221 * 300.00475 * 1 2 3 25 25 H 1.08997 * 109.46957 * 60.00541 * 1 2 3 26 26 H 1.09000 * 109.46995 * 180.02562 * 1 2 3 27 27 H 0.96993 * 119.99640 * 179.97438 * 7 6 4 28 28 H 1.09003 * 109.47267 * 175.00141 * 12 2 1 29 29 H 1.08999 * 109.46883 * 55.00237 * 12 2 1 30 30 H 1.08004 * 125.03415 * 0.03139 * 14 13 12 31 31 H 1.08000 * 120.10117 * 180.02562 * 19 18 17 32 32 H 1.08000 * 119.73114 * 180.02562 * 20 19 18 33 33 H 1.08000 * 119.68639 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7105 -1.2304 5 1 2.6533 -1.5885 -1.1312 6 6 1.6992 -0.2396 -2.4827 7 7 0.9435 0.8299 -2.6035 8 14 2.3214 -1.1206 -4.0078 9 1 3.1456 -2.2880 -3.6035 10 1 1.1661 -1.5871 -4.8159 11 1 3.1467 -0.1878 -4.8165 12 6 2.0400 -0.7211 1.2494 13 6 1.6413 0.0573 2.4766 14 6 2.3910 0.9610 3.1274 15 7 1.6971 1.4604 4.1953 16 1 2.0306 2.1299 4.8129 17 6 0.4517 0.8743 4.2596 18 6 0.3626 -0.0295 3.1860 19 6 -0.8028 -0.7757 2.9978 20 6 -1.8531 -0.6237 3.8585 21 6 -1.7718 0.2666 4.9203 22 6 -0.6303 1.0141 5.1253 23 9 -0.5624 1.8781 6.1617 24 1 -0.3633 0.5139 0.8899 25 1 -0.3633 0.5137 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 0.7095 1.1614 -3.4845 28 1 3.1264 -0.7993 1.2057 29 1 1.6054 -1.7196 1.2954 30 1 3.3934 1.2509 2.8490 31 1 -0.8738 -1.4709 2.1743 32 1 -2.7536 -1.2017 3.7121 33 1 -2.6102 0.3754 5.5924 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259653754.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:18:55 Heat of formation + Delta-G solvation = -19.781800 kcal Electronic energy + Delta-G solvation = -17398.649134 eV Core-core repulsion = 14530.932495 eV Total energy + Delta-G solvation = -2867.716639 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 247.107 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -49.85396 -42.14255 -37.80001 -36.93239 -34.01596 -31.72382 -30.31756 -30.10871 -27.19847 -26.65164 -23.77257 -23.03232 -22.09016 -20.05977 -19.01976 -18.20635 -17.84360 -16.88892 -16.76732 -16.52127 -16.24873 -15.62285 -15.20748 -14.80403 -14.63220 -14.22922 -13.86319 -13.42299 -13.11798 -12.84491 -12.73175 -12.59663 -12.49506 -12.45834 -12.14350 -11.92838 -11.45924 -11.34850 -10.72637 -10.37570 -10.20630 -9.24490 -8.46323 -8.00524 -6.16131 0.04522 0.57269 1.43580 1.45716 1.56780 1.74783 2.16824 2.48488 2.84120 3.25477 3.28194 3.78491 4.01281 4.05334 4.30469 4.44023 4.59550 4.73280 4.88735 4.90059 5.00866 5.06190 5.20213 5.30858 5.32737 5.42902 5.57228 5.63689 5.68565 5.79383 5.85106 6.07909 6.17788 6.25808 6.46587 6.65884 6.98211 7.52395 9.02590 Molecular weight = 247.11amu Principal moments of inertia in cm(-1) A = 0.039992 B = 0.005456 C = 0.005134 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 699.977261 B = 5130.424312 C = 5453.008445 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C 0.049 3.951 3 H -0.009 1.009 4 C -0.528 4.528 5 H 0.056 0.944 6 C 0.010 3.990 7 N -0.921 5.921 8 Si 0.952 3.048 9 H -0.264 1.264 10 H -0.283 1.283 11 H -0.283 1.283 12 C -0.026 4.026 13 C -0.173 4.173 14 C 0.053 3.947 15 N -0.583 5.583 16 H 0.429 0.571 17 C 0.044 3.956 18 C -0.094 4.094 19 C -0.085 4.085 20 C -0.124 4.124 21 C -0.130 4.130 22 C 0.064 3.936 23 F -0.149 7.149 24 H 0.027 0.973 25 H 0.042 0.958 26 H 0.024 0.976 27 H 0.258 0.742 28 H 0.062 0.938 29 H 0.054 0.946 30 H 0.197 0.803 31 H 0.125 0.875 32 H 0.160 0.840 33 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.077 -0.769 14.928 15.091 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.030 3.970 3 H 0.009 0.991 4 C -0.566 4.566 5 H 0.074 0.926 6 C -0.188 4.188 7 N -0.561 5.561 8 Si 0.778 3.222 9 H -0.188 1.188 10 H -0.209 1.209 11 H -0.209 1.209 12 C -0.064 4.064 13 C -0.179 4.179 14 C -0.073 4.073 15 N -0.187 5.187 16 H 0.268 0.732 17 C -0.064 4.064 18 C -0.099 4.099 19 C -0.104 4.104 20 C -0.144 4.144 21 C -0.149 4.149 22 C 0.042 3.958 23 F -0.128 7.128 24 H 0.046 0.954 25 H 0.061 0.939 26 H 0.043 0.957 27 H 0.067 0.933 28 H 0.080 0.920 29 H 0.072 0.928 30 H 0.214 0.786 31 H 0.143 0.857 32 H 0.177 0.823 33 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -2.049 -0.529 14.916 15.065 hybrid contribution 0.469 0.361 -0.710 0.924 sum -1.580 -0.168 14.206 14.294 Atomic orbital electron populations 1.21624 0.98584 0.98251 0.99029 1.18583 0.92949 0.93956 0.91484 0.99085 1.21673 1.30687 1.12315 0.91940 0.92573 1.25750 0.95421 0.95716 1.01945 1.70066 1.38097 1.24418 1.23552 0.85599 0.78099 0.78807 0.79691 1.18845 1.20914 1.20896 1.19908 0.99558 0.96901 0.90018 1.20654 0.93680 1.03836 0.99739 1.22035 0.99118 0.97188 0.88949 1.41586 1.11552 1.38203 1.27319 0.73206 1.18372 0.88367 1.00320 0.99367 1.19248 0.95901 0.99107 0.95674 1.20664 0.91850 0.98560 0.99282 1.20770 0.99529 0.99716 0.94336 1.21118 0.96395 0.96968 1.00439 1.16849 0.94866 0.96260 0.87846 1.91430 1.96880 1.68238 1.56233 0.95384 0.93873 0.95655 0.93306 0.91968 0.92775 0.78577 0.85715 0.82265 0.81899 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.80 8.00 71.98 0.58 -5.23 16 2 C 0.05 2.46 2.29 -11.54 -0.03 2.44 16 3 H -0.01 -0.51 8.14 -2.39 -0.02 -0.53 16 4 C -0.53 -28.94 8.56 25.60 0.22 -28.72 16 5 H 0.06 2.99 7.74 -2.92 -0.02 2.97 16 6 C 0.01 0.53 5.30 84.66 0.45 0.98 16 7 N -0.92 -54.19 11.32 21.45 0.24 -53.95 16 8 Si 0.95 43.63 29.54 68.60 2.03 45.66 16 9 H -0.26 -11.61 7.11 99.48 0.71 -10.91 16 10 H -0.28 -12.80 7.11 99.48 0.71 -12.10 16 11 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 12 C -0.03 -1.06 5.16 29.85 0.15 -0.90 16 13 C -0.17 -6.26 5.07 -18.63 -0.09 -6.36 16 14 C 0.05 1.58 11.73 83.01 0.97 2.55 16 15 N -0.58 -15.83 6.07 -187.48 -1.14 -16.96 16 16 H 0.43 8.68 8.96 -92.71 -0.83 7.85 16 17 C 0.04 1.39 7.26 39.04 0.28 1.67 16 18 C -0.09 -3.27 5.24 -20.21 -0.11 -3.38 16 19 C -0.08 -2.68 8.69 22.24 0.19 -2.48 16 20 C -0.12 -3.11 9.97 22.03 0.22 -2.89 16 21 C -0.13 -3.13 9.99 22.34 0.22 -2.91 16 22 C 0.06 1.80 7.32 22.46 0.16 1.97 16 23 F -0.15 -4.03 17.27 44.97 0.78 -3.26 16 24 H 0.03 1.27 5.49 -2.39 -0.01 1.26 16 25 H 0.04 2.40 6.07 -2.39 -0.01 2.39 16 26 H 0.02 1.17 7.77 -2.39 -0.02 1.15 16 27 H 0.26 14.43 8.31 -92.71 -0.77 13.66 16 28 H 0.06 2.41 8.14 -2.39 -0.02 2.39 16 29 H 0.05 2.20 8.14 -2.39 -0.02 2.18 16 30 H 0.20 4.61 8.06 -2.91 -0.02 4.58 16 31 H 0.12 4.00 7.34 -2.91 -0.02 3.97 16 32 H 0.16 2.90 8.06 -2.91 -0.02 2.88 16 33 H 0.16 2.84 8.06 -2.91 -0.02 2.82 16 Total: -1.00 -64.71 280.41 5.44 -59.27 By element: Atomic # 1 Polarization: 12.20 SS G_CDS: 0.30 Total: 12.50 kcal Atomic # 6 Polarization: -46.49 SS G_CDS: 3.23 Total: -43.26 kcal Atomic # 7 Polarization: -70.02 SS G_CDS: -0.90 Total: -70.92 kcal Atomic # 9 Polarization: -4.03 SS G_CDS: 0.78 Total: -3.26 kcal Atomic # 14 Polarization: 43.63 SS G_CDS: 2.03 Total: 45.66 kcal Total: -64.71 5.44 -59.27 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259653754.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.488 kcal (2) G-P(sol) polarization free energy of solvation -64.707 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.219 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.438 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.270 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.782 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds