Wall clock time and date at job start Mon Mar 30 2020 06:19:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09007 * 109.47427 * 2 1 4 4 C 1.50701 * 109.47419 * 120.00339 * 2 1 3 5 5 H 1.08002 * 119.99761 * 119.99343 * 4 2 1 6 6 C 1.37871 * 119.99694 * 300.27906 * 4 2 1 7 7 N 1.31514 * 120.00482 * 359.71466 * 6 4 2 8 8 Si 1.86801 * 119.99746 * 179.72062 * 6 4 2 9 9 H 1.48504 * 109.47266 * 60.00049 * 8 6 4 10 10 H 1.48504 * 109.46970 * 179.97438 * 8 6 4 11 11 H 1.48499 * 109.47383 * 299.99456 * 8 6 4 12 12 C 1.53004 * 109.47200 * 240.00679 * 2 1 3 13 13 C 1.50699 * 109.47118 * 64.99794 * 12 2 1 14 14 C 1.34246 * 126.48940 * 264.69002 * 13 12 2 15 15 N 1.36801 * 109.92386 * 179.83598 * 14 13 12 16 16 H 0.97004 * 125.07375 * 180.18548 * 15 14 13 17 17 C 1.37777 * 109.86001 * 0.44411 * 15 14 13 18 18 C 1.40628 * 107.15702 * 359.73773 * 17 15 14 19 19 C 1.39654 * 119.94068 * 179.97438 * 18 17 15 20 20 C 1.36636 * 119.81411 * 0.02562 * 19 18 17 21 21 C 1.38794 * 120.54334 * 359.97438 * 20 19 18 22 22 C 1.37978 * 120.63673 * 359.97438 * 21 20 19 23 23 F 1.35099 * 120.13414 * 179.97438 * 22 21 20 24 24 H 1.08998 * 109.47156 * 179.97438 * 1 2 3 25 25 H 1.09004 * 109.46783 * 299.99852 * 1 2 3 26 26 H 1.09005 * 109.46870 * 59.99511 * 1 2 3 27 27 H 0.96995 * 120.00207 * 179.97438 * 7 6 4 28 28 H 1.08998 * 109.47007 * 185.00162 * 12 2 1 29 29 H 1.09000 * 109.46554 * 305.00084 * 12 2 1 30 30 H 1.08000 * 125.04077 * 359.97438 * 14 13 12 31 31 H 1.08008 * 120.09369 * 180.02562 * 19 18 17 32 32 H 1.08000 * 119.73093 * 179.97438 * 20 19 18 33 33 H 1.08005 * 119.68368 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7105 1.2304 5 1 2.6532 -1.5886 1.1312 6 6 1.6946 -0.2428 2.4826 7 7 0.9386 0.8265 2.6034 8 14 2.3109 -1.1280 4.0077 9 1 3.7959 -1.1287 4.0136 10 1 1.8119 -0.4309 5.2203 11 1 1.8152 -2.5279 4.0019 12 6 2.0400 -0.7211 -1.2494 13 6 1.6413 0.0573 -2.4766 14 6 0.5565 -0.1542 -3.2386 15 7 0.5234 0.7509 -4.2639 16 1 -0.1669 0.7979 -4.9438 17 6 1.6197 1.5821 -4.1901 18 6 2.3674 1.1839 -3.0676 19 6 3.5474 1.8560 -2.7420 20 6 3.9707 2.8994 -3.5160 21 6 3.2376 3.2976 -4.6252 22 6 2.0694 2.6474 -4.9664 23 9 1.3635 3.0438 -6.0479 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 0.7006 1.1552 3.4844 28 1 3.1263 -0.7993 -1.2057 29 1 1.6053 -1.7196 -1.2953 30 1 -0.1819 -0.9233 -3.0664 31 1 4.1238 1.5520 -1.8807 32 1 4.8832 3.4185 -3.2627 33 1 3.5848 4.1244 -5.2272 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259653756.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:19:09 Heat of formation + Delta-G solvation = -4.775480 kcal Electronic energy + Delta-G solvation = -17306.085185 eV Core-core repulsion = 14439.019269 eV Total energy + Delta-G solvation = -2867.065916 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 247.107 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -48.71742 -40.92141 -36.68064 -35.06353 -32.21047 -30.37144 -29.16537 -28.46566 -25.53059 -24.80063 -22.60545 -21.90868 -20.15485 -18.89062 -17.66165 -16.63728 -16.14023 -15.76052 -15.58844 -15.05879 -14.56049 -14.50226 -13.84391 -13.40491 -12.82547 -12.75116 -12.36622 -11.91508 -11.55379 -11.42885 -11.35460 -11.15003 -10.86140 -10.67266 -10.55233 -10.05520 -9.66375 -9.57418 -8.88537 -8.72960 -8.26354 -8.07107 -7.19459 -5.91651 -3.98648 1.21494 1.72231 3.01748 3.29126 3.35032 3.39925 3.42276 4.02697 4.42574 4.48874 4.90433 5.12685 5.16649 5.38582 5.52501 5.54890 5.79818 5.97740 6.16412 6.25089 6.39687 6.63468 6.71087 6.75603 6.85478 6.98583 7.08113 7.11809 7.31710 7.37226 7.52403 7.73830 7.80044 8.09393 8.24857 8.52659 9.05955 9.65941 11.13849 Molecular weight = 247.11amu Principal moments of inertia in cm(-1) A = 0.036174 B = 0.005489 C = 0.005124 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 773.850311 B = 5099.817340 C = 5462.725214 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.051 3.949 3 H 0.026 0.974 4 C -0.513 4.513 5 H 0.054 0.946 6 C 0.061 3.939 7 N -0.890 5.890 8 Si 0.889 3.111 9 H -0.278 1.278 10 H -0.289 1.289 11 H -0.278 1.278 12 C -0.042 4.042 13 C -0.128 4.128 14 C 0.037 3.963 15 N -0.593 5.593 16 H 0.413 0.587 17 C 0.063 3.937 18 C -0.076 4.076 19 C -0.063 4.063 20 C -0.135 4.135 21 C -0.136 4.136 22 C 0.073 3.927 23 F -0.151 7.151 24 H 0.021 0.979 25 H 0.078 0.922 26 H 0.008 0.992 27 H 0.259 0.741 28 H 0.058 0.942 29 H 0.056 0.944 30 H 0.170 0.830 31 H 0.132 0.868 32 H 0.129 0.871 33 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.677 1.752 -13.553 13.768 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.032 3.968 3 H 0.044 0.956 4 C -0.551 4.551 5 H 0.072 0.928 6 C -0.140 4.140 7 N -0.529 5.529 8 Si 0.717 3.283 9 H -0.203 1.203 10 H -0.214 1.214 11 H -0.204 1.204 12 C -0.080 4.080 13 C -0.135 4.135 14 C -0.087 4.087 15 N -0.196 5.196 16 H 0.249 0.751 17 C -0.046 4.046 18 C -0.082 4.082 19 C -0.081 4.081 20 C -0.154 4.154 21 C -0.156 4.156 22 C 0.051 3.949 23 F -0.130 7.130 24 H 0.040 0.960 25 H 0.097 0.903 26 H 0.027 0.973 27 H 0.069 0.931 28 H 0.076 0.924 29 H 0.075 0.925 30 H 0.187 0.813 31 H 0.150 0.850 32 H 0.147 0.853 33 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 1.442 1.844 -13.515 13.717 hybrid contribution -0.333 -0.284 0.368 0.572 sum 1.109 1.561 -13.147 13.286 Atomic orbital electron populations 1.21800 0.99039 0.98456 0.99981 1.18605 0.92530 0.95803 0.89844 0.95582 1.21195 1.30915 1.12325 0.90710 0.92784 1.24955 0.95164 0.94997 0.98873 1.69892 1.36801 1.23030 1.23216 0.86720 0.79186 0.79795 0.82621 1.20318 1.21424 1.20381 1.20257 0.99961 0.96913 0.90873 1.20790 0.95527 0.98160 0.98978 1.21668 1.00692 0.96341 0.90046 1.41598 1.21886 1.28846 1.27264 0.75070 1.18170 0.91675 0.95646 0.99100 1.19094 0.95951 0.98217 0.94920 1.20486 0.94467 0.94278 0.98914 1.20403 1.00793 0.98656 0.95555 1.20716 0.94095 1.01151 0.99646 1.16643 0.94089 0.97087 0.87085 1.91425 1.78218 1.90436 1.52924 0.95999 0.90346 0.97296 0.93104 0.92375 0.92491 0.81318 0.84992 0.85348 0.85081 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.25 8.73 37.16 0.32 -2.92 16 2 C 0.05 1.25 2.29 -91.77 -0.21 1.04 16 3 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 4 C -0.51 -13.90 8.56 -34.44 -0.29 -14.20 16 5 H 0.05 1.43 7.74 -52.49 -0.41 1.02 16 6 C 0.06 1.69 5.30 -17.82 -0.09 1.59 16 7 N -0.89 -25.66 11.31 55.43 0.63 -25.03 16 8 Si 0.89 21.17 29.54 -169.99 -5.02 16.15 16 9 H -0.28 -6.53 7.11 56.52 0.40 -6.12 16 10 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 11 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 12 C -0.04 -0.85 5.16 -27.88 -0.14 -1.00 16 13 C -0.13 -2.35 4.88 -102.71 -0.50 -2.85 16 14 C 0.04 0.57 10.76 -16.74 -0.18 0.39 16 15 N -0.59 -8.55 6.07 -10.61 -0.06 -8.61 16 16 H 0.41 4.62 8.96 -40.82 -0.37 4.25 16 17 C 0.06 1.03 7.26 -83.91 -0.61 0.42 16 18 C -0.08 -1.36 6.35 -105.15 -0.67 -2.03 16 19 C -0.06 -1.02 10.05 -39.63 -0.40 -1.42 16 20 C -0.13 -1.84 9.97 -39.95 -0.40 -2.24 16 21 C -0.14 -1.84 9.99 -39.47 -0.39 -2.24 16 22 C 0.07 1.11 7.32 -39.29 -0.29 0.82 16 23 F -0.15 -2.22 17.27 2.25 0.04 -2.18 16 24 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 25 H 0.08 2.12 6.06 -51.93 -0.31 1.80 16 26 H 0.01 0.18 6.67 -51.93 -0.35 -0.17 16 27 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 28 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 29 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 30 H 0.17 2.20 8.06 -52.49 -0.42 1.77 16 31 H 0.13 2.08 8.06 -52.48 -0.42 1.66 16 32 H 0.13 1.38 8.06 -52.49 -0.42 0.96 16 33 H 0.13 1.41 8.06 -52.48 -0.42 0.99 16 LS Contribution 284.69 15.07 4.29 4.29 Total: -1.00 -29.91 284.69 -7.94 -37.84 By element: Atomic # 1 Polarization: 6.11 SS G_CDS: -3.95 Total: 2.16 kcal Atomic # 6 Polarization: -20.77 SS G_CDS: -3.86 Total: -24.63 kcal Atomic # 7 Polarization: -34.21 SS G_CDS: 0.56 Total: -33.65 kcal Atomic # 9 Polarization: -2.22 SS G_CDS: 0.04 Total: -2.18 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.02 Total: 16.15 kcal Total LS contribution 4.29 Total: 4.29 kcal Total: -29.91 -7.94 -37.84 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259653756.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.069 kcal (2) G-P(sol) polarization free energy of solvation -29.908 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.160 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.936 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.844 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.775 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds