Wall clock time and date at job start Mon Mar 30 2020 06:19:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09007 * 109.47427 * 2 1 4 4 C 1.50701 * 109.47419 * 120.00339 * 2 1 3 5 5 H 1.08002 * 119.99761 * 119.99343 * 4 2 1 6 6 C 1.37871 * 119.99694 * 300.27906 * 4 2 1 7 7 N 1.31514 * 120.00482 * 359.71466 * 6 4 2 8 8 Si 1.86801 * 119.99746 * 179.72062 * 6 4 2 9 9 H 1.48504 * 109.47266 * 60.00049 * 8 6 4 10 10 H 1.48504 * 109.46970 * 179.97438 * 8 6 4 11 11 H 1.48499 * 109.47383 * 299.99456 * 8 6 4 12 12 C 1.53004 * 109.47200 * 240.00679 * 2 1 3 13 13 C 1.50699 * 109.47118 * 64.99794 * 12 2 1 14 14 C 1.34246 * 126.48940 * 264.69002 * 13 12 2 15 15 N 1.36801 * 109.92386 * 179.83598 * 14 13 12 16 16 H 0.97004 * 125.07375 * 180.18548 * 15 14 13 17 17 C 1.37777 * 109.86001 * 0.44411 * 15 14 13 18 18 C 1.40628 * 107.15702 * 359.73773 * 17 15 14 19 19 C 1.39654 * 119.94068 * 179.97438 * 18 17 15 20 20 C 1.36636 * 119.81411 * 0.02562 * 19 18 17 21 21 C 1.38794 * 120.54334 * 359.97438 * 20 19 18 22 22 C 1.37978 * 120.63673 * 359.97438 * 21 20 19 23 23 F 1.35099 * 120.13414 * 179.97438 * 22 21 20 24 24 H 1.08998 * 109.47156 * 179.97438 * 1 2 3 25 25 H 1.09004 * 109.46783 * 299.99852 * 1 2 3 26 26 H 1.09005 * 109.46870 * 59.99511 * 1 2 3 27 27 H 0.96995 * 120.00207 * 179.97438 * 7 6 4 28 28 H 1.08998 * 109.47007 * 185.00162 * 12 2 1 29 29 H 1.09000 * 109.46554 * 305.00084 * 12 2 1 30 30 H 1.08000 * 125.04077 * 359.97438 * 14 13 12 31 31 H 1.08008 * 120.09369 * 180.02562 * 19 18 17 32 32 H 1.08000 * 119.73093 * 179.97438 * 20 19 18 33 33 H 1.08005 * 119.68368 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7105 1.2304 5 1 2.6532 -1.5886 1.1312 6 6 1.6946 -0.2428 2.4826 7 7 0.9386 0.8265 2.6034 8 14 2.3109 -1.1280 4.0077 9 1 3.7959 -1.1287 4.0136 10 1 1.8119 -0.4309 5.2203 11 1 1.8152 -2.5279 4.0019 12 6 2.0400 -0.7211 -1.2494 13 6 1.6413 0.0573 -2.4766 14 6 0.5565 -0.1542 -3.2386 15 7 0.5234 0.7509 -4.2639 16 1 -0.1669 0.7979 -4.9438 17 6 1.6197 1.5821 -4.1901 18 6 2.3674 1.1839 -3.0676 19 6 3.5474 1.8560 -2.7420 20 6 3.9707 2.8994 -3.5160 21 6 3.2376 3.2976 -4.6252 22 6 2.0694 2.6474 -4.9664 23 9 1.3635 3.0438 -6.0479 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 0.7006 1.1552 3.4844 28 1 3.1263 -0.7993 -1.2057 29 1 1.6053 -1.7196 -1.2953 30 1 -0.1819 -0.9233 -3.0664 31 1 4.1238 1.5520 -1.8807 32 1 4.8832 3.4185 -3.2627 33 1 3.5848 4.1244 -5.2272 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259653756.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:19:08 Heat of formation + Delta-G solvation = -20.498254 kcal Electronic energy + Delta-G solvation = -17306.766975 eV Core-core repulsion = 14439.019269 eV Total energy + Delta-G solvation = -2867.747707 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 247.107 amu Computer time = 4.54 seconds Orbital eigenvalues (eV) -49.86472 -42.13436 -37.86076 -36.87096 -33.99829 -31.88560 -30.34039 -29.84603 -27.35022 -26.68072 -23.78461 -23.08701 -21.90600 -20.24931 -18.97097 -18.19072 -17.82429 -16.89427 -16.77043 -16.53105 -16.27420 -15.62393 -15.19728 -15.00839 -14.54583 -14.10279 -13.89852 -13.37469 -13.17104 -12.92882 -12.76037 -12.61042 -12.47324 -12.38319 -12.14116 -12.04426 -11.44140 -11.40223 -10.74779 -10.37004 -10.24598 -9.25766 -8.45673 -8.01133 -6.16119 0.02837 0.55636 1.45547 1.46754 1.54074 1.74494 2.15829 2.48704 2.82191 3.25539 3.26776 3.77314 4.00113 4.04145 4.29292 4.42432 4.59542 4.71881 4.86086 4.91390 4.97088 5.05491 5.19199 5.23602 5.35122 5.39807 5.55202 5.60469 5.68140 5.77866 5.84658 6.07180 6.17526 6.25768 6.46086 6.65694 6.97869 7.52362 9.02522 Molecular weight = 247.11amu Principal moments of inertia in cm(-1) A = 0.036174 B = 0.005489 C = 0.005124 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 773.850311 B = 5099.817340 C = 5462.725214 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C 0.051 3.949 3 H -0.013 1.013 4 C -0.530 4.530 5 H 0.056 0.944 6 C 0.010 3.990 7 N -0.921 5.921 8 Si 0.952 3.048 9 H -0.271 1.271 10 H -0.288 1.288 11 H -0.270 1.270 12 C -0.026 4.026 13 C -0.172 4.172 14 C 0.058 3.942 15 N -0.582 5.582 16 H 0.429 0.571 17 C 0.047 3.953 18 C -0.103 4.103 19 C -0.090 4.090 20 C -0.122 4.122 21 C -0.130 4.130 22 C 0.065 3.935 23 F -0.148 7.148 24 H 0.030 0.970 25 H 0.045 0.955 26 H 0.026 0.974 27 H 0.258 0.742 28 H 0.049 0.951 29 H 0.065 0.935 30 H 0.198 0.802 31 H 0.123 0.877 32 H 0.160 0.840 33 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.857 1.632 -14.725 14.931 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.032 3.968 3 H 0.005 0.995 4 C -0.568 4.568 5 H 0.074 0.926 6 C -0.188 4.188 7 N -0.561 5.561 8 Si 0.778 3.222 9 H -0.197 1.197 10 H -0.214 1.214 11 H -0.195 1.195 12 C -0.064 4.064 13 C -0.178 4.178 14 C -0.067 4.067 15 N -0.186 5.186 16 H 0.269 0.731 17 C -0.062 4.062 18 C -0.108 4.108 19 C -0.109 4.109 20 C -0.141 4.141 21 C -0.150 4.150 22 C 0.043 3.957 23 F -0.127 7.127 24 H 0.049 0.951 25 H 0.064 0.936 26 H 0.045 0.955 27 H 0.067 0.933 28 H 0.068 0.932 29 H 0.084 0.916 30 H 0.214 0.786 31 H 0.141 0.859 32 H 0.178 0.822 33 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges 1.618 1.725 -14.720 14.909 hybrid contribution -0.368 -0.184 0.659 0.778 sum 1.250 1.541 -14.060 14.200 Atomic orbital electron populations 1.21602 0.98514 0.98642 0.99160 1.18527 0.92918 0.93894 0.91458 0.99480 1.21611 1.30800 1.12460 0.91965 0.92601 1.25747 0.95385 0.95712 1.01934 1.70048 1.37951 1.24419 1.23690 0.85708 0.78812 0.78859 0.78842 1.19661 1.21350 1.19463 1.19905 0.99330 0.97032 0.90093 1.20628 0.97713 0.99767 0.99689 1.22006 0.99754 0.95982 0.88998 1.41594 1.21786 1.27984 1.27241 0.73147 1.18336 0.92204 0.96464 0.99171 1.19345 0.96927 0.98700 0.95834 1.20642 0.94749 0.95793 0.99713 1.20759 1.01452 0.97312 0.94613 1.21126 0.93089 1.01322 0.99421 1.16838 0.94671 0.97033 0.87145 1.91432 1.78244 1.90335 1.52671 0.95112 0.93609 0.95530 0.93280 0.93193 0.91591 0.78561 0.85898 0.82234 0.81787 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.89 8.73 71.98 0.63 -5.26 16 2 C 0.05 2.56 2.29 -11.54 -0.03 2.53 16 3 H -0.01 -0.75 8.14 -2.38 -0.02 -0.77 16 4 C -0.53 -29.15 8.56 25.60 0.22 -28.93 16 5 H 0.06 2.97 7.74 -2.91 -0.02 2.95 16 6 C 0.01 0.57 5.30 84.65 0.45 1.02 16 7 N -0.92 -54.29 11.31 21.45 0.24 -54.04 16 8 Si 0.95 43.65 29.54 68.60 2.03 45.68 16 9 H -0.27 -12.08 7.11 99.48 0.71 -11.38 16 10 H -0.29 -13.06 7.11 99.48 0.71 -12.36 16 11 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 12 C -0.03 -1.05 5.16 29.85 0.15 -0.90 16 13 C -0.17 -6.25 4.88 -18.63 -0.09 -6.34 16 14 C 0.06 1.72 10.76 83.01 0.89 2.62 16 15 N -0.58 -15.75 6.07 -187.48 -1.14 -16.88 16 16 H 0.43 8.60 8.96 -92.71 -0.83 7.77 16 17 C 0.05 1.48 7.26 39.04 0.28 1.77 16 18 C -0.10 -3.66 6.35 -20.20 -0.13 -3.79 16 19 C -0.09 -2.94 10.05 22.24 0.22 -2.72 16 20 C -0.12 -3.13 9.97 22.03 0.22 -2.91 16 21 C -0.13 -3.18 9.99 22.34 0.22 -2.96 16 22 C 0.06 1.85 7.32 22.46 0.16 2.02 16 23 F -0.15 -4.00 17.27 44.97 0.78 -3.23 16 24 H 0.03 1.38 8.14 -2.39 -0.02 1.36 16 25 H 0.04 2.51 6.06 -2.38 -0.01 2.50 16 26 H 0.03 1.14 6.67 -2.38 -0.02 1.13 16 27 H 0.26 14.54 8.31 -92.71 -0.77 13.77 16 28 H 0.05 2.06 8.14 -2.39 -0.02 2.04 16 29 H 0.07 2.52 8.14 -2.39 -0.02 2.50 16 30 H 0.20 4.55 8.06 -2.91 -0.02 4.53 16 31 H 0.12 4.07 8.06 -2.91 -0.02 4.05 16 32 H 0.16 2.99 8.06 -2.91 -0.02 2.97 16 33 H 0.16 2.89 8.06 -2.91 -0.02 2.86 16 Total: -1.00 -65.03 284.69 5.41 -59.61 By element: Atomic # 1 Polarization: 12.44 SS G_CDS: 0.29 Total: 12.73 kcal Atomic # 6 Polarization: -47.08 SS G_CDS: 3.21 Total: -43.87 kcal Atomic # 7 Polarization: -70.03 SS G_CDS: -0.90 Total: -70.93 kcal Atomic # 9 Polarization: -4.00 SS G_CDS: 0.78 Total: -3.23 kcal Atomic # 14 Polarization: 43.65 SS G_CDS: 2.03 Total: 45.68 kcal Total: -65.03 5.41 -59.61 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259653756.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.115 kcal (2) G-P(sol) polarization free energy of solvation -65.027 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.912 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.414 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.613 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.498 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.54 seconds