Wall clock time and date at job start Mon Mar 30 2020 05:48:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.30647 * 125.95255 * 2 1 4 4 N 1.40004 * 108.58418 * 180.02562 * 3 2 1 5 5 H 0.97000 * 125.88466 * 180.02562 * 4 3 2 6 6 C 1.34900 * 108.23822 * 359.74772 * 4 3 2 7 7 C 1.36621 * 107.57223 * 0.39972 * 6 4 3 8 8 C 1.48033 * 126.24468 * 179.86925 * 7 6 4 9 9 O 1.35068 * 126.56837 * 133.51566 * 8 7 6 10 10 C 1.34097 * 107.71325 * 179.97438 * 9 8 7 11 11 C 1.50698 * 125.49064 * 179.97438 * 10 9 8 12 12 C 1.50706 * 109.47399 * 270.00280 * 11 10 9 13 13 H 1.08001 * 119.99709 * 0.02562 * 12 11 10 14 14 C 1.37869 * 120.00340 * 179.97438 * 12 11 10 15 15 N 1.31520 * 120.00000 * 359.97438 * 14 12 11 16 16 Si 1.86805 * 120.00389 * 179.97438 * 14 12 11 17 17 H 1.48502 * 109.46701 * 59.99709 * 16 14 12 18 18 H 1.48496 * 109.47161 * 180.02562 * 16 14 12 19 19 H 1.48499 * 109.47010 * 300.00169 * 16 14 12 20 20 N 1.30287 * 109.01878 * 0.02562 * 10 9 8 21 21 C 1.34264 * 108.88089 * 359.74778 * 20 10 9 22 22 C 1.50697 * 126.23874 * 180.28596 * 21 20 10 23 23 H 1.08999 * 109.47056 * 270.00069 * 1 2 3 24 24 H 1.08996 * 109.46709 * 30.00351 * 1 2 3 25 25 H 1.09001 * 109.47304 * 149.99748 * 1 2 3 26 26 H 1.07997 * 126.21811 * 180.24145 * 6 4 3 27 27 H 1.08999 * 109.47152 * 30.00270 * 11 10 9 28 28 H 1.08997 * 109.47414 * 150.00082 * 11 10 9 29 29 H 0.97001 * 120.00165 * 179.97438 * 15 14 12 30 30 H 1.08998 * 109.47532 * 264.94549 * 22 21 20 31 31 H 1.09010 * 109.46916 * 24.93945 * 22 21 20 32 32 H 1.08999 * 109.47315 * 144.93916 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2740 1.0576 0.0000 4 7 3.6102 0.6397 -0.0006 5 1 4.3875 1.2200 -0.0004 6 6 3.6307 -0.7092 0.0047 7 6 2.3347 -1.1414 -0.0005 8 6 1.8821 -2.5509 -0.0002 9 8 0.9213 -3.0874 0.7829 10 6 0.8185 -4.3873 0.4700 11 6 -0.1344 -5.3672 1.1045 12 6 0.5250 -6.0078 2.2987 13 1 1.5332 -5.7324 2.5712 14 6 -0.1590 -6.9445 3.0440 15 7 -1.3872 -7.2787 2.7131 16 14 0.6586 -7.7390 4.5238 17 1 1.0216 -6.6905 5.5109 18 1 -0.2805 -8.7045 5.1491 19 1 1.8849 -8.4537 4.0874 20 7 1.6760 -4.6667 -0.4703 21 6 2.3493 -3.5500 -0.7902 22 6 3.4288 -3.4290 -1.8347 23 1 -0.3633 0.0000 1.0277 24 1 -0.3632 0.8899 -0.5139 25 1 -0.3634 -0.8900 -0.5139 26 1 4.5116 -1.3340 0.0093 27 1 -1.0349 -4.8431 1.4244 28 1 -0.4000 -6.1369 0.3799 29 1 -1.8684 -7.9380 3.2372 30 1 4.4052 -3.5363 -1.3623 31 1 3.2995 -4.2109 -2.5832 32 1 3.3626 -2.4524 -2.3143 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259662316.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:48:25 Heat of formation + Delta-G solvation = 77.250389 kcal Electronic energy + Delta-G solvation = -17206.028969 eV Core-core repulsion = 14362.439924 eV Total energy + Delta-G solvation = -2843.589046 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 247.106 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -42.46185 -41.12271 -34.40824 -33.68157 -33.04531 -32.00461 -29.87232 -28.70043 -27.95820 -25.94416 -23.63220 -21.67396 -20.57172 -20.17343 -19.51426 -18.11658 -16.67572 -15.61191 -15.60259 -14.90535 -14.60778 -14.30015 -14.08255 -13.20990 -12.98753 -12.89269 -12.77911 -12.45548 -12.20206 -12.13098 -11.84655 -11.44986 -10.93235 -10.83636 -10.70690 -10.26880 -10.02396 -9.76262 -9.56514 -9.48295 -9.03764 -8.52218 -7.48525 -6.14554 -4.19284 1.57692 2.04008 2.64649 2.79666 3.30703 3.33850 3.36676 3.50014 3.61978 4.38774 4.62090 4.77154 4.91519 5.17441 5.21508 5.28701 5.40588 5.67393 5.71143 5.80566 5.82077 5.92981 6.00123 6.07877 6.47950 6.67087 6.73286 7.07849 7.09241 7.32059 7.33103 7.53878 7.79397 8.07692 8.69362 8.80961 9.44345 10.95456 Molecular weight = 247.11amu Principal moments of inertia in cm(-1) A = 0.029341 B = 0.005400 C = 0.005220 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 954.053540 B = 5183.809603 C = 5362.711206 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C 0.102 3.898 3 N -0.297 5.297 4 N -0.475 5.475 5 H 0.442 0.558 6 C 0.084 3.916 7 C -0.146 4.146 8 C -0.014 4.014 9 O -0.197 6.197 10 C 0.255 3.745 11 C 0.104 3.896 12 C -0.519 4.519 13 H 0.059 0.941 14 C 0.064 3.936 15 N -0.891 5.891 16 Si 0.904 3.096 17 H -0.275 1.275 18 H -0.285 1.285 19 H -0.274 1.274 20 N -0.505 5.505 21 C -0.003 4.003 22 C -0.063 4.063 23 H 0.083 0.917 24 H 0.074 0.926 25 H 0.080 0.920 26 H 0.183 0.817 27 H 0.050 0.950 28 H 0.066 0.934 29 H 0.266 0.734 30 H 0.066 0.934 31 H 0.072 0.928 32 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.493 13.350 -6.427 17.079 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.066 4.066 3 N -0.121 5.121 4 N -0.182 5.182 5 H 0.286 0.714 6 C -0.064 4.064 7 C -0.158 4.158 8 C -0.068 4.068 9 O -0.085 6.085 10 C 0.050 3.950 11 C 0.067 3.933 12 C -0.557 4.557 13 H 0.077 0.923 14 C -0.139 4.139 15 N -0.529 5.529 16 Si 0.731 3.269 17 H -0.201 1.201 18 H -0.210 1.210 19 H -0.200 1.200 20 N -0.233 5.233 21 C -0.124 4.124 22 C -0.121 4.121 23 H 0.101 0.899 24 H 0.093 0.907 25 H 0.099 0.901 26 H 0.200 0.800 27 H 0.068 0.932 28 H 0.084 0.916 29 H 0.076 0.924 30 H 0.085 0.915 31 H 0.091 0.909 32 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 8.412 13.918 -6.617 17.557 hybrid contribution 0.880 -0.460 1.182 1.544 sum 9.292 13.458 -5.435 17.234 Atomic orbital electron populations 1.20231 0.86104 1.03382 1.03673 1.22575 0.97317 0.89422 0.97255 1.77161 0.86566 1.22275 1.26053 1.46029 1.07419 1.05115 1.59633 0.71362 1.22500 0.98676 0.85169 1.00074 1.17410 0.91632 0.88917 1.17851 1.19831 0.96648 0.92508 0.97789 1.84533 1.46850 1.25292 1.51818 1.27721 0.96373 0.79803 0.91111 1.18067 0.90539 0.89070 0.95667 1.20827 1.00773 1.23431 1.10710 0.92265 1.24928 0.94851 0.96220 0.97857 1.69923 1.10531 1.32512 1.39944 0.86457 0.79212 0.79103 0.82142 1.20076 1.20996 1.19986 1.70376 1.09309 1.27587 1.16066 1.21648 1.01361 0.88892 1.00477 1.20002 0.94366 1.02166 0.95545 0.89869 0.90741 0.90140 0.80035 0.93239 0.91638 0.92391 0.91523 0.90904 0.91562 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.98 10.27 36.01 0.37 -0.61 16 2 C 0.10 1.51 7.26 -82.05 -0.60 0.92 16 3 N -0.30 -4.09 12.66 33.86 0.43 -3.67 16 4 N -0.47 -4.97 7.33 30.69 0.22 -4.74 16 5 H 0.44 2.80 8.96 -182.67 -1.64 1.16 16 6 C 0.08 0.97 11.54 -16.79 -0.19 0.78 16 7 C -0.15 -2.26 5.74 -105.42 -0.60 -2.86 16 8 C -0.01 -0.26 6.84 -36.49 -0.25 -0.51 16 9 O -0.20 -4.36 10.80 4.11 0.04 -4.32 16 10 C 0.26 6.10 7.52 -12.93 -0.10 6.00 16 11 C 0.10 2.71 5.60 -29.03 -0.16 2.55 16 12 C -0.52 -14.59 9.09 -34.44 -0.31 -14.90 16 13 H 0.06 1.68 7.74 -52.49 -0.41 1.27 16 14 C 0.06 1.78 5.46 -17.82 -0.10 1.69 16 15 N -0.89 -25.60 13.29 55.43 0.74 -24.86 16 16 Si 0.90 21.37 29.54 -169.99 -5.02 16.35 16 17 H -0.28 -6.43 7.11 56.52 0.40 -6.02 16 18 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 19 H -0.27 -6.44 7.11 56.52 0.40 -6.03 16 20 N -0.50 -11.59 11.27 -7.08 -0.08 -11.67 16 21 C 0.00 -0.05 7.15 -82.45 -0.59 -0.64 16 22 C -0.06 -0.87 9.82 36.00 0.35 -0.52 16 23 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 24 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 25 H 0.08 1.10 7.99 -51.93 -0.41 0.69 16 26 H 0.18 1.51 8.06 -52.49 -0.42 1.09 16 27 H 0.05 1.29 8.14 -51.93 -0.42 0.87 16 28 H 0.07 1.76 8.14 -51.93 -0.42 1.34 16 29 H 0.27 7.21 8.31 -40.82 -0.34 6.87 16 30 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 31 H 0.07 0.99 8.14 -51.92 -0.42 0.56 16 32 H 0.07 0.77 8.05 -51.93 -0.42 0.36 16 LS Contribution 290.45 15.07 4.38 4.38 Total: -1.00 -32.84 290.45 -6.44 -39.28 By element: Atomic # 1 Polarization: 2.33 SS G_CDS: -4.97 Total: -2.64 kcal Atomic # 6 Polarization: -5.93 SS G_CDS: -2.18 Total: -8.11 kcal Atomic # 7 Polarization: -46.24 SS G_CDS: 1.31 Total: -44.93 kcal Atomic # 8 Polarization: -4.36 SS G_CDS: 0.04 Total: -4.32 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.02 Total: 16.35 kcal Total LS contribution 4.38 Total: 4.38 kcal Total: -32.84 -6.44 -39.28 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259662316.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.527 kcal (2) G-P(sol) polarization free energy of solvation -32.837 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 83.690 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.439 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.277 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.250 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds