Wall clock time and date at job start Mon Mar 30 2020 05:48:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.30647 * 125.95255 * 2 1 4 4 N 1.40004 * 108.58418 * 180.02562 * 3 2 1 5 5 H 0.97000 * 125.88466 * 180.02562 * 4 3 2 6 6 C 1.34900 * 108.23822 * 359.74772 * 4 3 2 7 7 C 1.36621 * 107.57223 * 0.39972 * 6 4 3 8 8 C 1.48033 * 126.24468 * 179.86925 * 7 6 4 9 9 O 1.35068 * 126.56837 * 133.51566 * 8 7 6 10 10 C 1.34097 * 107.71325 * 179.97438 * 9 8 7 11 11 C 1.50698 * 125.49064 * 179.97438 * 10 9 8 12 12 C 1.50706 * 109.47399 * 270.00280 * 11 10 9 13 13 H 1.08001 * 119.99709 * 0.02562 * 12 11 10 14 14 C 1.37869 * 120.00340 * 179.97438 * 12 11 10 15 15 N 1.31520 * 120.00000 * 359.97438 * 14 12 11 16 16 Si 1.86805 * 120.00389 * 179.97438 * 14 12 11 17 17 H 1.48502 * 109.46701 * 59.99709 * 16 14 12 18 18 H 1.48496 * 109.47161 * 180.02562 * 16 14 12 19 19 H 1.48499 * 109.47010 * 300.00169 * 16 14 12 20 20 N 1.30287 * 109.01878 * 0.02562 * 10 9 8 21 21 C 1.34264 * 108.88089 * 359.74778 * 20 10 9 22 22 C 1.50697 * 126.23874 * 180.28596 * 21 20 10 23 23 H 1.08999 * 109.47056 * 270.00069 * 1 2 3 24 24 H 1.08996 * 109.46709 * 30.00351 * 1 2 3 25 25 H 1.09001 * 109.47304 * 149.99748 * 1 2 3 26 26 H 1.07997 * 126.21811 * 180.24145 * 6 4 3 27 27 H 1.08999 * 109.47152 * 30.00270 * 11 10 9 28 28 H 1.08997 * 109.47414 * 150.00082 * 11 10 9 29 29 H 0.97001 * 120.00165 * 179.97438 * 15 14 12 30 30 H 1.08998 * 109.47532 * 264.94549 * 22 21 20 31 31 H 1.09010 * 109.46916 * 24.93945 * 22 21 20 32 32 H 1.08999 * 109.47315 * 144.93916 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2740 1.0576 0.0000 4 7 3.6102 0.6397 -0.0006 5 1 4.3875 1.2200 -0.0004 6 6 3.6307 -0.7092 0.0047 7 6 2.3347 -1.1414 -0.0005 8 6 1.8821 -2.5509 -0.0002 9 8 0.9213 -3.0874 0.7829 10 6 0.8185 -4.3873 0.4700 11 6 -0.1344 -5.3672 1.1045 12 6 0.5250 -6.0078 2.2987 13 1 1.5332 -5.7324 2.5712 14 6 -0.1590 -6.9445 3.0440 15 7 -1.3872 -7.2787 2.7131 16 14 0.6586 -7.7390 4.5238 17 1 1.0216 -6.6905 5.5109 18 1 -0.2805 -8.7045 5.1491 19 1 1.8849 -8.4537 4.0874 20 7 1.6760 -4.6667 -0.4703 21 6 2.3493 -3.5500 -0.7902 22 6 3.4288 -3.4290 -1.8347 23 1 -0.3633 0.0000 1.0277 24 1 -0.3632 0.8899 -0.5139 25 1 -0.3634 -0.8900 -0.5139 26 1 4.5116 -1.3340 0.0093 27 1 -1.0349 -4.8431 1.4244 28 1 -0.4000 -6.1369 0.3799 29 1 -1.8684 -7.9380 3.2372 30 1 4.4052 -3.5363 -1.3623 31 1 3.2995 -4.2109 -2.5832 32 1 3.3626 -2.4524 -2.3143 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259662316.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:48:24 Heat of formation + Delta-G solvation = 53.121930 kcal Electronic energy + Delta-G solvation = -17207.075258 eV Core-core repulsion = 14362.439924 eV Total energy + Delta-G solvation = -2844.635334 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 247.106 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -44.06549 -42.17329 -35.99725 -35.63912 -34.21579 -33.48222 -31.41894 -30.15784 -28.99165 -27.43528 -25.54165 -22.89336 -22.28376 -21.47695 -20.71491 -19.20283 -18.75311 -17.30848 -17.17784 -16.48768 -15.93862 -15.44265 -15.30808 -14.83250 -14.37237 -14.07076 -13.93403 -13.90196 -13.76517 -13.60342 -13.13260 -12.96742 -12.78700 -12.59999 -12.06299 -11.98545 -11.91304 -11.51504 -11.36147 -10.66092 -10.47774 -10.30544 -8.91010 -8.26272 -6.41336 0.35074 0.83147 1.38434 1.44108 1.44752 1.53828 1.77720 1.90064 2.17215 2.41066 3.05532 3.36506 3.57700 3.80574 3.97832 4.11920 4.25627 4.57637 4.66651 4.72708 4.79923 4.82475 4.88694 4.93745 5.04554 5.14481 5.23571 5.32987 5.43896 5.60038 5.61944 5.96749 6.29599 6.55427 6.63136 7.03400 7.26666 8.82872 Molecular weight = 247.11amu Principal moments of inertia in cm(-1) A = 0.029341 B = 0.005400 C = 0.005220 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 954.053540 B = 5183.809603 C = 5362.711206 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.089 3.911 3 N -0.312 5.312 4 N -0.452 5.452 5 H 0.463 0.537 6 C 0.122 3.878 7 C -0.195 4.195 8 C 0.002 3.998 9 O -0.212 6.212 10 C 0.220 3.780 11 C 0.115 3.885 12 C -0.541 4.541 13 H 0.051 0.949 14 C 0.016 3.984 15 N -0.921 5.921 16 Si 0.972 3.028 17 H -0.268 1.268 18 H -0.273 1.273 19 H -0.269 1.269 20 N -0.520 5.520 21 C -0.021 4.021 22 C -0.058 4.058 23 H 0.081 0.919 24 H 0.094 0.906 25 H 0.065 0.935 26 H 0.223 0.777 27 H 0.035 0.965 28 H 0.045 0.955 29 H 0.272 0.728 30 H 0.093 0.907 31 H 0.070 0.930 32 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.160 14.647 -6.349 19.478 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.078 4.078 3 N -0.136 5.136 4 N -0.160 5.160 5 H 0.312 0.688 6 C -0.029 4.029 7 C -0.207 4.207 8 C -0.052 4.052 9 O -0.100 6.100 10 C 0.015 3.985 11 C 0.077 3.923 12 C -0.579 4.579 13 H 0.069 0.931 14 C -0.183 4.183 15 N -0.559 5.559 16 Si 0.795 3.205 17 H -0.193 1.193 18 H -0.198 1.198 19 H -0.194 1.194 20 N -0.250 5.250 21 C -0.142 4.142 22 C -0.115 4.115 23 H 0.099 0.901 24 H 0.113 0.887 25 H 0.084 0.916 26 H 0.239 0.761 27 H 0.053 0.947 28 H 0.063 0.937 29 H 0.081 0.919 30 H 0.112 0.888 31 H 0.089 0.911 32 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 11.090 15.268 -6.546 19.974 hybrid contribution 0.141 -0.700 1.092 1.305 sum 11.231 14.568 -5.454 19.186 Atomic orbital electron populations 1.20233 0.85946 1.03627 1.03631 1.22732 0.97933 0.89574 0.97519 1.77132 0.87817 1.22040 1.26592 1.46102 1.07241 1.05260 1.57421 0.68833 1.22981 0.98321 0.85547 0.96059 1.17553 0.93611 0.87216 1.22292 1.20514 0.94663 0.94000 0.95991 1.84487 1.48209 1.24640 1.52677 1.27010 0.97929 0.80445 0.93115 1.17653 0.90682 0.89110 0.94849 1.21067 1.00657 1.24335 1.11863 0.93118 1.25820 0.95380 0.96450 1.00697 1.70025 1.11766 1.32945 1.41178 0.85400 0.78396 0.78297 0.78375 1.19333 1.19794 1.19398 1.70306 1.09345 1.29741 1.15589 1.22438 1.02459 0.87549 1.01709 1.20175 0.93620 1.03522 0.94194 0.90076 0.88721 0.91641 0.76092 0.94728 0.93698 0.91931 0.88815 0.91052 0.89116 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.97 10.27 71.24 0.73 -1.24 16 2 C 0.09 2.53 7.26 43.41 0.31 2.84 16 3 N -0.31 -7.80 12.66 -46.77 -0.59 -8.39 16 4 N -0.45 -7.62 7.33 -56.83 -0.42 -8.04 16 5 H 0.46 3.71 8.96 -213.38 -1.91 1.80 16 6 C 0.12 2.30 11.54 83.84 0.97 3.27 16 7 C -0.19 -5.63 5.74 -20.38 -0.12 -5.75 16 8 C 0.00 0.06 6.84 24.27 0.17 0.23 16 9 O -0.21 -9.74 10.80 -8.20 -0.09 -9.83 16 10 C 0.22 11.00 7.52 88.34 0.66 11.67 16 11 C 0.11 6.34 5.60 29.10 0.16 6.51 16 12 C -0.54 -31.49 9.09 25.60 0.23 -31.25 16 13 H 0.05 2.96 7.74 -2.91 -0.02 2.94 16 14 C 0.02 0.93 5.46 84.65 0.46 1.39 16 15 N -0.92 -54.09 13.29 21.44 0.28 -53.80 16 16 Si 0.97 43.96 29.54 68.60 2.03 45.99 16 17 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 18 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 19 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 20 N -0.52 -24.37 11.27 -291.01 -3.28 -27.65 16 21 C -0.02 -0.77 7.15 41.59 0.30 -0.47 16 22 C -0.06 -1.42 9.82 71.23 0.70 -0.72 16 23 H 0.08 2.10 8.14 -2.39 -0.02 2.08 16 24 H 0.09 2.00 8.14 -2.39 -0.02 1.98 16 25 H 0.06 1.87 7.99 -2.39 -0.02 1.85 16 26 H 0.22 2.37 8.06 -2.91 -0.02 2.35 16 27 H 0.03 1.95 8.14 -2.39 -0.02 1.93 16 28 H 0.04 2.59 8.14 -2.39 -0.02 2.57 16 29 H 0.27 14.87 8.31 -92.71 -0.77 14.10 16 30 H 0.09 1.79 8.14 -2.39 -0.02 1.77 16 31 H 0.07 1.78 8.14 -2.38 -0.02 1.76 16 32 H 0.09 1.77 8.05 -2.39 -0.02 1.75 16 Total: -1.00 -73.42 290.45 1.75 -71.67 By element: Atomic # 1 Polarization: 4.34 SS G_CDS: -0.76 Total: 3.57 kcal Atomic # 6 Polarization: -18.11 SS G_CDS: 4.58 Total: -13.53 kcal Atomic # 7 Polarization: -93.87 SS G_CDS: -4.00 Total: -97.88 kcal Atomic # 8 Polarization: -9.74 SS G_CDS: -0.09 Total: -9.83 kcal Atomic # 14 Polarization: 43.96 SS G_CDS: 2.03 Total: 45.99 kcal Total: -73.42 1.75 -71.67 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259662316.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.794 kcal (2) G-P(sol) polarization free energy of solvation -73.424 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.370 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.752 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.672 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.122 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds