Wall clock time and date at job start Mon Mar 30 2020 06:11:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50690 * 1 3 3 C 1.46487 * 126.49434 * 2 1 4 4 C 1.39700 * 134.00796 * 0.02562 * 3 2 1 5 5 C 1.36601 * 119.80553 * 180.28111 * 4 3 2 6 6 C 1.38838 * 120.54763 * 359.44264 * 5 4 3 7 7 C 1.37940 * 120.63367 * 0.55825 * 6 5 4 8 8 F 1.35103 * 120.13159 * 179.70202 * 7 6 5 9 9 C 1.39319 * 119.74097 * 359.72920 * 7 6 5 10 10 N 1.37768 * 133.51056 * 179.97438 * 9 7 6 11 11 H 0.97000 * 125.07494 * 359.97438 * 10 9 7 12 12 C 1.34254 * 126.49928 * 180.02562 * 2 1 3 13 13 C 1.50701 * 125.03229 * 0.02562 * 12 2 1 14 14 H 1.08995 * 109.47488 * 0.02562 * 13 12 2 15 15 C 1.52992 * 109.47017 * 240.00010 * 13 12 2 16 16 C 1.50702 * 109.46630 * 120.00203 * 13 12 2 17 17 H 1.07998 * 120.00378 * 0.02562 * 16 13 12 18 18 C 1.37878 * 119.99781 * 179.97438 * 16 13 12 19 19 N 1.31515 * 119.99976 * 0.02562 * 18 16 13 20 20 Si 1.86804 * 120.00063 * 180.02562 * 18 16 13 21 21 H 1.48493 * 109.47349 * 90.00169 * 20 18 16 22 22 H 1.48501 * 109.47117 * 209.99938 * 20 18 16 23 23 H 1.48501 * 109.46941 * 329.99831 * 20 18 16 24 24 H 1.09000 * 109.47289 * 90.02353 * 1 2 3 25 25 H 1.09003 * 109.47154 * 210.02245 * 1 2 3 26 26 H 1.09000 * 109.47014 * 330.02246 * 1 2 3 27 27 H 1.08002 * 120.09294 * 359.97438 * 4 3 2 28 28 H 1.08001 * 119.72623 * 179.72701 * 5 4 3 29 29 H 1.08000 * 119.68103 * 180.28986 * 6 5 4 30 30 H 1.09006 * 109.47260 * 180.02562 * 15 13 12 31 31 H 1.09004 * 109.47530 * 300.00389 * 15 13 12 32 32 H 1.09000 * 109.47394 * 60.00741 * 15 13 12 33 33 H 0.97003 * 119.99732 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3781 1.1776 0.0000 4 6 2.1476 2.5555 0.0004 5 6 3.2046 3.4207 -0.0055 6 6 4.5080 2.9425 -0.0004 7 6 4.7591 1.5862 -0.0008 8 9 6.0315 1.1320 -0.0018 9 6 3.6954 0.6864 -0.0006 10 7 3.6165 -0.6890 -0.0013 11 1 4.3772 -1.2909 -0.0025 12 6 2.3055 -1.0792 -0.0005 13 6 1.8281 -2.5086 -0.0017 14 1 0.7383 -2.5278 -0.0025 15 6 2.3501 -3.2217 1.2472 16 6 2.3433 -3.2092 -1.2325 17 1 2.9555 -2.6731 -1.9425 18 6 2.0339 -4.5348 -1.4515 19 7 1.2888 -5.1877 -0.5866 20 14 2.6732 -5.4034 -2.9768 21 1 3.9922 -6.0177 -2.6804 22 1 1.7140 -6.4622 -3.3820 23 1 2.8213 -4.4209 -4.0804 24 1 -0.3634 -0.0004 -1.0276 25 1 -0.3633 -0.8898 0.5142 26 1 -0.3633 0.8902 0.5135 27 1 1.1366 2.9354 0.0005 28 1 3.0249 4.4857 -0.0096 29 1 5.3333 3.6392 -0.0005 30 1 2.0052 -4.2557 1.2461 31 1 3.4400 -3.2026 1.2477 32 1 1.9775 -2.7150 2.1374 33 1 1.0715 -6.1205 -0.7405 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259662897.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:11:17 Heat of formation + Delta-G solvation = -11.295394 kcal Electronic energy + Delta-G solvation = -17518.041430 eV Core-core repulsion = 14650.692790 eV Total energy + Delta-G solvation = -2867.348641 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 247.107 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -48.57141 -40.79220 -36.82314 -34.11340 -32.36602 -30.87569 -29.31394 -28.23960 -25.88031 -25.28980 -22.77629 -21.95071 -20.29404 -18.52639 -17.49271 -16.84328 -16.17936 -15.48342 -15.43310 -14.90333 -14.54467 -14.01315 -13.81182 -13.14441 -12.77679 -12.66074 -12.21250 -12.08193 -11.70152 -11.63353 -11.32258 -11.26877 -11.05693 -10.85864 -10.79285 -10.41333 -10.32749 -9.73907 -9.20515 -8.92592 -8.53867 -7.73764 -6.98713 -6.16888 -4.26072 1.35118 1.84686 3.20589 3.26649 3.29240 3.35822 3.63636 4.09870 4.31181 4.57170 5.05099 5.13145 5.15349 5.40605 5.56531 5.66731 5.98299 6.11030 6.20867 6.24920 6.32553 6.43483 6.53664 6.61809 6.66515 6.82193 6.91222 6.95717 7.11909 7.27710 7.47830 7.58302 7.83566 7.88180 8.10956 8.19492 8.75512 9.40417 10.88025 Molecular weight = 247.11amu Principal moments of inertia in cm(-1) A = 0.027073 B = 0.006709 C = 0.006012 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1033.988527 B = 4172.187866 C = 4656.505794 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 C -0.218 4.218 3 C -0.067 4.067 4 C -0.086 4.086 5 C -0.131 4.131 6 C -0.153 4.153 7 C 0.086 3.914 8 F -0.149 7.149 9 C 0.051 3.949 10 N -0.575 5.575 11 H 0.418 0.582 12 C 0.162 3.838 13 C 0.089 3.911 14 H 0.060 0.940 15 C -0.137 4.137 16 C -0.520 4.520 17 H 0.056 0.944 18 C 0.067 3.933 19 N -0.885 5.885 20 Si 0.895 3.105 21 H -0.280 1.280 22 H -0.284 1.284 23 H -0.274 1.274 24 H 0.056 0.944 25 H 0.064 0.936 26 H 0.051 0.949 27 H 0.122 0.878 28 H 0.124 0.876 29 H 0.129 0.871 30 H 0.091 0.909 31 H 0.024 0.976 32 H 0.014 0.986 33 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.841 11.621 2.161 11.963 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.224 4.224 3 C -0.073 4.073 4 C -0.105 4.105 5 C -0.151 4.151 6 C -0.173 4.173 7 C 0.064 3.936 8 F -0.128 7.128 9 C -0.057 4.057 10 N -0.175 5.175 11 H 0.255 0.745 12 C 0.052 3.948 13 C 0.070 3.930 14 H 0.077 0.923 15 C -0.195 4.195 16 C -0.558 4.558 17 H 0.075 0.925 18 C -0.135 4.135 19 N -0.523 5.523 20 Si 0.723 3.277 21 H -0.206 1.206 22 H -0.210 1.210 23 H -0.198 1.198 24 H 0.075 0.925 25 H 0.083 0.917 26 H 0.070 0.930 27 H 0.140 0.860 28 H 0.142 0.858 29 H 0.147 0.853 30 H 0.110 0.890 31 H 0.043 0.957 32 H 0.033 0.967 33 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 1.887 11.302 2.192 11.666 hybrid contribution 1.146 -0.867 -0.881 1.686 sum 3.034 10.435 1.311 10.946 Atomic orbital electron populations 1.19958 0.89702 1.01304 1.01163 1.19929 0.95195 0.89498 1.17728 1.19041 0.91071 0.93308 1.03896 1.20237 0.98998 0.90911 1.00316 1.20291 0.91320 0.99302 1.04176 1.20601 0.98297 0.92007 1.06408 1.16722 0.76308 0.91451 1.09089 1.91437 1.37011 1.89819 1.94563 1.18196 0.94735 0.84426 1.08371 1.41782 1.08558 1.03722 1.63450 0.74490 1.21330 0.81107 0.98070 0.94281 1.17796 0.97638 0.82307 0.95269 0.92252 1.21810 0.98355 1.03982 0.95306 1.20998 1.33171 0.95681 1.05948 0.92549 1.24921 0.94730 0.97270 0.96607 1.69861 1.36716 1.10465 1.35248 0.86536 0.78696 0.79379 0.83127 1.20599 1.20959 1.19835 0.92527 0.91688 0.93013 0.86021 0.85819 0.85341 0.88994 0.95704 0.96680 0.92628 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.08 10.00 36.00 0.36 -0.72 16 2 C -0.22 -4.30 6.31 -102.71 -0.65 -4.95 16 3 C -0.07 -1.24 6.35 -105.14 -0.67 -1.91 16 4 C -0.09 -1.30 10.05 -39.63 -0.40 -1.69 16 5 C -0.13 -1.75 9.97 -39.95 -0.40 -2.15 16 6 C -0.15 -2.19 9.99 -39.47 -0.39 -2.59 16 7 C 0.09 1.47 7.32 -39.29 -0.29 1.18 16 8 F -0.15 -2.56 17.27 2.25 0.04 -2.52 16 9 C 0.05 0.98 7.26 -83.91 -0.61 0.37 16 10 N -0.57 -11.49 6.07 -6.91 -0.04 -11.53 16 11 H 0.42 7.92 8.96 -40.82 -0.37 7.55 16 12 C 0.16 3.47 5.53 -81.78 -0.45 3.02 16 13 C 0.09 2.10 2.63 -92.93 -0.24 1.86 16 14 H 0.06 1.48 6.67 -51.93 -0.35 1.14 16 15 C -0.14 -3.12 8.95 37.15 0.33 -2.78 16 16 C -0.52 -13.52 8.55 -34.44 -0.29 -13.81 16 17 H 0.06 1.49 7.74 -52.49 -0.41 1.08 16 18 C 0.07 1.76 5.30 -17.82 -0.09 1.67 16 19 N -0.89 -23.83 11.32 55.43 0.63 -23.21 16 20 Si 0.90 20.56 29.54 -169.99 -5.02 15.54 16 21 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 22 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 23 H -0.27 -6.32 7.11 56.52 0.40 -5.91 16 24 H 0.06 0.93 8.14 -51.93 -0.42 0.50 16 25 H 0.06 1.11 7.07 -51.93 -0.37 0.74 16 26 H 0.05 0.74 8.14 -51.93 -0.42 0.31 16 27 H 0.12 1.54 8.06 -52.49 -0.42 1.12 16 28 H 0.12 1.24 8.06 -52.49 -0.42 0.82 16 29 H 0.13 1.49 8.06 -52.49 -0.42 1.07 16 30 H 0.09 2.29 6.07 -51.93 -0.32 1.98 16 31 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.01 0.30 8.14 -51.93 -0.42 -0.12 16 33 H 0.26 6.79 8.31 -40.82 -0.34 6.45 16 LS Contribution 285.31 15.07 4.30 4.30 Total: -1.00 -27.36 285.31 -7.79 -35.15 By element: Atomic # 1 Polarization: 8.67 SS G_CDS: -3.89 Total: 4.77 kcal Atomic # 6 Polarization: -18.71 SS G_CDS: -3.80 Total: -22.51 kcal Atomic # 7 Polarization: -35.32 SS G_CDS: 0.59 Total: -34.74 kcal Atomic # 9 Polarization: -2.56 SS G_CDS: 0.04 Total: -2.52 kcal Atomic # 14 Polarization: 20.56 SS G_CDS: -5.02 Total: 15.54 kcal Total LS contribution 4.30 Total: 4.30 kcal Total: -27.36 -7.79 -35.15 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259662897.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.850 kcal (2) G-P(sol) polarization free energy of solvation -27.356 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.506 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.789 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.145 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.295 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds