Wall clock time and date at job start Mon Mar 30 2020 06:11:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50690 * 1 3 3 C 1.46487 * 126.49434 * 2 1 4 4 C 1.39700 * 134.00796 * 0.02562 * 3 2 1 5 5 C 1.36601 * 119.80553 * 180.28111 * 4 3 2 6 6 C 1.38838 * 120.54763 * 359.44264 * 5 4 3 7 7 C 1.37940 * 120.63367 * 0.55825 * 6 5 4 8 8 F 1.35103 * 120.13159 * 179.70202 * 7 6 5 9 9 C 1.39319 * 119.74097 * 359.72920 * 7 6 5 10 10 N 1.37768 * 133.51056 * 179.97438 * 9 7 6 11 11 H 0.97000 * 125.07494 * 359.97438 * 10 9 7 12 12 C 1.34254 * 126.49928 * 180.02562 * 2 1 3 13 13 C 1.50701 * 125.03229 * 0.02562 * 12 2 1 14 14 H 1.08995 * 109.47488 * 0.02562 * 13 12 2 15 15 C 1.52992 * 109.47017 * 240.00010 * 13 12 2 16 16 C 1.50702 * 109.46630 * 120.00203 * 13 12 2 17 17 H 1.07998 * 120.00378 * 0.02562 * 16 13 12 18 18 C 1.37878 * 119.99781 * 179.97438 * 16 13 12 19 19 N 1.31515 * 119.99976 * 0.02562 * 18 16 13 20 20 Si 1.86804 * 120.00063 * 180.02562 * 18 16 13 21 21 H 1.48493 * 109.47349 * 90.00169 * 20 18 16 22 22 H 1.48501 * 109.47117 * 209.99938 * 20 18 16 23 23 H 1.48501 * 109.46941 * 329.99831 * 20 18 16 24 24 H 1.09000 * 109.47289 * 90.02353 * 1 2 3 25 25 H 1.09003 * 109.47154 * 210.02245 * 1 2 3 26 26 H 1.09000 * 109.47014 * 330.02246 * 1 2 3 27 27 H 1.08002 * 120.09294 * 359.97438 * 4 3 2 28 28 H 1.08001 * 119.72623 * 179.72701 * 5 4 3 29 29 H 1.08000 * 119.68103 * 180.28986 * 6 5 4 30 30 H 1.09006 * 109.47260 * 180.02562 * 15 13 12 31 31 H 1.09004 * 109.47530 * 300.00389 * 15 13 12 32 32 H 1.09000 * 109.47394 * 60.00741 * 15 13 12 33 33 H 0.97003 * 119.99732 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3781 1.1776 0.0000 4 6 2.1476 2.5555 0.0004 5 6 3.2046 3.4207 -0.0055 6 6 4.5080 2.9425 -0.0004 7 6 4.7591 1.5862 -0.0008 8 9 6.0315 1.1320 -0.0018 9 6 3.6954 0.6864 -0.0006 10 7 3.6165 -0.6890 -0.0013 11 1 4.3772 -1.2909 -0.0025 12 6 2.3055 -1.0792 -0.0005 13 6 1.8281 -2.5086 -0.0017 14 1 0.7383 -2.5278 -0.0025 15 6 2.3501 -3.2217 1.2472 16 6 2.3433 -3.2092 -1.2325 17 1 2.9555 -2.6731 -1.9425 18 6 2.0339 -4.5348 -1.4515 19 7 1.2888 -5.1877 -0.5866 20 14 2.6732 -5.4034 -2.9768 21 1 3.9922 -6.0177 -2.6804 22 1 1.7140 -6.4622 -3.3820 23 1 2.8213 -4.4209 -4.0804 24 1 -0.3634 -0.0004 -1.0276 25 1 -0.3633 -0.8898 0.5142 26 1 -0.3633 0.8902 0.5135 27 1 1.1366 2.9354 0.0005 28 1 3.0249 4.4857 -0.0096 29 1 5.3333 3.6392 -0.0005 30 1 2.0052 -4.2557 1.2461 31 1 3.4400 -3.2026 1.2477 32 1 1.9775 -2.7150 2.1374 33 1 1.0715 -6.1205 -0.7405 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259662897.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:11:16 Heat of formation + Delta-G solvation = -24.849650 kcal Electronic energy + Delta-G solvation = -17518.629187 eV Core-core repulsion = 14650.692790 eV Total energy + Delta-G solvation = -2867.936397 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 247.107 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -49.85044 -42.18374 -38.14173 -35.92834 -33.81305 -32.67040 -30.55199 -29.64014 -27.36973 -27.20357 -24.33287 -23.22062 -21.81236 -20.00284 -18.90306 -18.54263 -17.70106 -16.89938 -16.74319 -16.56868 -15.85082 -15.45780 -15.27904 -14.77741 -14.50233 -14.01441 -13.57727 -13.49544 -13.38023 -13.05402 -12.90377 -12.86823 -12.54435 -12.40321 -12.24927 -12.21859 -12.08649 -11.47020 -11.11857 -10.55215 -10.24468 -9.09613 -8.40146 -8.15507 -6.32554 0.08836 0.62423 1.37070 1.39485 1.48507 1.80201 2.22363 2.38882 2.86574 3.10901 3.32662 3.77846 4.03972 4.05705 4.35634 4.45488 4.56345 4.67370 4.81811 4.90002 4.98726 4.98949 5.08214 5.10248 5.18988 5.31236 5.41953 5.45434 5.62067 5.66229 5.89531 5.94505 6.02554 6.22167 6.33228 6.63621 6.73721 7.36414 8.86539 Molecular weight = 247.11amu Principal moments of inertia in cm(-1) A = 0.027073 B = 0.006709 C = 0.006012 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1033.988527 B = 4172.187866 C = 4656.505794 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 C -0.219 4.219 3 C -0.091 4.091 4 C -0.083 4.083 5 C -0.119 4.119 6 C -0.134 4.134 7 C 0.057 3.943 8 F -0.156 7.156 9 C 0.032 3.968 10 N -0.583 5.583 11 H 0.415 0.585 12 C 0.124 3.876 13 C 0.094 3.906 14 H 0.038 0.962 15 C -0.125 4.125 16 C -0.532 4.532 17 H 0.044 0.956 18 C 0.025 3.975 19 N -0.908 5.908 20 Si 0.952 3.048 21 H -0.276 1.276 22 H -0.278 1.278 23 H -0.275 1.275 24 H 0.058 0.942 25 H 0.053 0.947 26 H 0.081 0.919 27 H 0.150 0.850 28 H 0.170 0.830 29 H 0.162 0.838 30 H 0.068 0.932 31 H 0.025 0.975 32 H 0.028 0.972 33 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.016 14.422 1.883 14.683 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.225 4.225 3 C -0.097 4.097 4 C -0.102 4.102 5 C -0.138 4.138 6 C -0.153 4.153 7 C 0.036 3.964 8 F -0.135 7.135 9 C -0.076 4.076 10 N -0.184 5.184 11 H 0.251 0.749 12 C 0.015 3.985 13 C 0.075 3.925 14 H 0.056 0.944 15 C -0.183 4.183 16 C -0.570 4.570 17 H 0.062 0.938 18 C -0.176 4.176 19 N -0.546 5.546 20 Si 0.778 3.222 21 H -0.201 1.201 22 H -0.204 1.204 23 H -0.200 1.200 24 H 0.077 0.923 25 H 0.072 0.928 26 H 0.100 0.900 27 H 0.168 0.832 28 H 0.188 0.812 29 H 0.179 0.821 30 H 0.087 0.913 31 H 0.044 0.956 32 H 0.047 0.953 33 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 2.061 14.111 1.917 14.389 hybrid contribution 1.113 -1.551 -0.774 2.061 sum 3.174 12.559 1.143 13.005 Atomic orbital electron populations 1.20011 0.88191 1.02239 1.01555 1.20356 0.96399 0.89810 1.15916 1.19300 0.90321 0.94567 1.05485 1.20656 1.01203 0.89424 0.98881 1.20830 0.90084 1.01342 1.01511 1.21132 1.00099 0.91061 1.03056 1.17078 0.75797 0.92420 1.11128 1.91415 1.37194 1.90079 1.94808 1.18612 0.96038 0.83978 1.09015 1.41715 1.07914 1.04475 1.64265 0.74876 1.20987 0.82266 0.97272 0.98006 1.17529 0.96272 0.84145 0.94560 0.94361 1.21644 0.98270 1.02570 0.95847 1.21210 1.33001 0.96098 1.06694 0.93750 1.25593 0.95005 0.97898 0.99061 1.69964 1.37501 1.10675 1.36501 0.85646 0.78314 0.78264 0.79973 1.20121 1.20353 1.20044 0.92310 0.92793 0.89994 0.83214 0.81242 0.82075 0.91287 0.95609 0.95322 0.92527 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -2.08 10.00 71.23 0.71 -1.36 16 2 C -0.22 -8.62 6.31 -18.63 -0.12 -8.74 16 3 C -0.09 -3.23 6.35 -20.20 -0.13 -3.36 16 4 C -0.08 -2.19 10.05 22.24 0.22 -1.96 16 5 C -0.12 -2.55 9.97 22.03 0.22 -2.33 16 6 C -0.13 -3.29 9.99 22.34 0.22 -3.07 16 7 C 0.06 1.88 7.32 22.46 0.16 2.04 16 8 F -0.16 -5.23 17.27 44.97 0.78 -4.46 16 9 C 0.03 1.19 7.26 39.04 0.28 1.47 16 10 N -0.58 -24.01 6.07 -175.78 -1.07 -25.08 16 11 H 0.41 16.56 8.96 -92.71 -0.83 15.73 16 12 C 0.12 5.46 5.53 40.88 0.23 5.69 16 13 C 0.09 4.63 2.63 -12.29 -0.03 4.60 16 14 H 0.04 2.01 6.67 -2.39 -0.02 2.00 16 15 C -0.13 -5.94 8.95 71.98 0.64 -5.30 16 16 C -0.53 -28.62 8.55 25.60 0.22 -28.40 16 17 H 0.04 2.43 7.74 -2.91 -0.02 2.41 16 18 C 0.02 1.32 5.30 84.65 0.45 1.77 16 19 N -0.91 -50.12 11.32 21.45 0.24 -49.87 16 20 Si 0.95 42.85 29.54 68.60 2.03 44.88 16 21 H -0.28 -12.12 7.11 99.48 0.71 -11.42 16 22 H -0.28 -12.18 7.11 99.48 0.71 -11.47 16 23 H -0.28 -12.38 7.11 99.48 0.71 -11.67 16 24 H 0.06 1.89 8.14 -2.39 -0.02 1.87 16 25 H 0.05 1.87 7.07 -2.39 -0.02 1.86 16 26 H 0.08 2.15 8.14 -2.39 -0.02 2.13 16 27 H 0.15 3.05 8.06 -2.91 -0.02 3.03 16 28 H 0.17 2.17 8.06 -2.91 -0.02 2.15 16 29 H 0.16 2.90 8.06 -2.91 -0.02 2.87 16 30 H 0.07 3.57 6.07 -2.38 -0.01 3.56 16 31 H 0.02 1.15 8.14 -2.39 -0.02 1.13 16 32 H 0.03 1.22 8.14 -2.39 -0.02 1.20 16 33 H 0.27 13.92 8.31 -92.71 -0.77 13.15 16 Total: -1.00 -60.32 285.31 5.37 -54.96 By element: Atomic # 1 Polarization: 18.22 SS G_CDS: 0.30 Total: 18.52 kcal Atomic # 6 Polarization: -42.03 SS G_CDS: 3.09 Total: -38.95 kcal Atomic # 7 Polarization: -74.13 SS G_CDS: -0.82 Total: -74.95 kcal Atomic # 9 Polarization: -5.23 SS G_CDS: 0.78 Total: -4.46 kcal Atomic # 14 Polarization: 42.85 SS G_CDS: 2.03 Total: 44.88 kcal Total: -60.32 5.37 -54.96 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259662897.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.108 kcal (2) G-P(sol) polarization free energy of solvation -60.324 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.216 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.366 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.958 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.850 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds