Wall clock time and date at job start Mon Mar 30 2020 05:49:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 O 1.34101 * 126.87408 * 2 1 4 4 N 1.20853 * 111.80854 * 179.97438 * 3 2 1 5 5 C 1.30042 * 111.93538 * 0.02562 * 4 3 2 6 6 C 1.36524 * 126.87031 * 179.97438 * 2 1 3 7 7 C 1.48557 * 128.14647 * 0.05763 * 6 2 1 8 8 C 1.35758 * 126.13407 * 179.66869 * 7 6 2 9 9 N 1.36902 * 106.67753 * 179.84399 * 8 7 6 10 10 C 1.46494 * 126.31051 * 180.15016 * 9 8 7 11 11 C 1.52999 * 109.47212 * 270.28337 * 10 9 8 12 12 C 1.50699 * 109.47382 * 179.97438 * 11 10 9 13 13 H 1.08003 * 119.99731 * 0.02562 * 12 11 10 14 14 C 1.37881 * 120.00341 * 179.97438 * 12 11 10 15 15 N 1.31509 * 119.99881 * 0.02562 * 14 12 11 16 16 Si 1.86798 * 120.00061 * 180.02562 * 14 12 11 17 17 H 1.48500 * 109.47199 * 90.00159 * 16 14 12 18 18 H 1.48495 * 109.46998 * 210.00385 * 16 14 12 19 19 H 1.48504 * 109.47041 * 329.99850 * 16 14 12 20 20 C 1.35060 * 107.38353 * 0.41112 * 9 8 7 21 21 N 1.30413 * 108.98199 * 359.74000 * 20 9 8 22 22 H 1.08999 * 109.46749 * 0.02562 * 1 2 3 23 23 H 1.08996 * 109.47082 * 120.02057 * 1 2 3 24 24 H 1.09004 * 109.46958 * 240.02399 * 1 2 3 25 25 H 1.08001 * 126.85567 * 179.97438 * 5 4 3 26 26 H 1.07993 * 126.65683 * 359.97438 * 8 7 6 27 27 H 1.09001 * 109.46868 * 30.27983 * 10 9 8 28 28 H 1.08996 * 109.47299 * 150.27851 * 10 9 8 29 29 H 1.09006 * 109.47351 * 299.99784 * 11 10 9 30 30 H 1.09001 * 109.47398 * 60.00051 * 11 10 9 31 31 H 0.97000 * 120.00473 * 180.02562 * 15 14 12 32 32 H 1.07996 * 125.51479 * 179.74057 * 20 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.3117 1.0727 0.0000 4 7 3.4787 0.7586 0.0005 5 6 3.6342 -0.5325 0.0004 6 6 2.3262 -1.0922 0.0005 7 6 1.9421 -2.5273 0.0000 8 6 2.7943 -3.5840 -0.0059 9 7 2.0201 -4.7131 -0.0005 10 6 2.5030 -6.0961 -0.0006 11 6 2.6711 -6.5775 -1.4431 12 6 3.1685 -8.0000 -1.4434 13 1 3.3466 -8.5099 -0.5081 14 6 3.3954 -8.6509 -2.6375 15 7 3.1781 -8.0302 -3.7763 16 14 4.0113 -10.4145 -2.6377 17 1 2.8528 -11.3434 -2.6372 18 1 4.8349 -10.6509 -3.8504 19 1 4.8360 -10.6509 -1.4255 20 6 0.7289 -4.3170 -0.0008 21 7 0.6850 -3.0136 -0.0005 22 1 -0.3633 1.0277 -0.0005 23 1 -0.3633 -0.5141 -0.8898 24 1 -0.3633 -0.5135 0.8902 25 1 4.5697 -1.0722 0.0003 26 1 3.8734 -3.5421 -0.0113 27 1 3.4631 -6.1457 0.5131 28 1 1.7827 -6.7326 0.5133 29 1 1.7110 -6.5279 -1.9570 30 1 3.3915 -5.9410 -1.9570 31 1 3.3373 -8.4882 -4.6165 32 1 -0.1287 -4.9734 -0.0013 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259694379.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:49:11 Heat of formation + Delta-G solvation = 90.290511 kcal Electronic energy + Delta-G solvation = -16811.088415 eV Core-core repulsion = 13968.064831 eV Total energy + Delta-G solvation = -2843.023584 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 247.106 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -45.84160 -42.87563 -36.61286 -35.35485 -34.34549 -33.94754 -31.28112 -30.49999 -28.33790 -26.96223 -24.83288 -23.54298 -22.91989 -21.59558 -20.78072 -18.84556 -18.59876 -18.19301 -17.30939 -16.68181 -16.02384 -15.91308 -15.18379 -15.07302 -14.53958 -14.45159 -14.18859 -13.95731 -13.92009 -13.47534 -13.17635 -12.89203 -12.67721 -12.24264 -12.10496 -12.06571 -11.56131 -11.44702 -10.97582 -10.68456 -10.62175 -10.25964 -8.94534 -8.25895 -6.39004 0.31992 0.91255 1.41696 1.42952 1.44905 1.54130 1.95432 2.16975 2.40802 2.46963 3.09873 3.32228 3.46705 3.74423 3.96283 4.08566 4.17152 4.33217 4.46227 4.58399 4.70505 4.72559 4.77852 4.86426 5.05245 5.22419 5.26510 5.36688 5.53586 5.68247 5.76329 6.04228 6.33573 6.78166 7.06112 7.26864 7.32538 8.85966 Molecular weight = 247.11amu Principal moments of inertia in cm(-1) A = 0.043656 B = 0.004114 C = 0.003966 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 641.230841 B = 6804.739697 C = 7057.614481 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 C -0.013 4.013 3 O 0.086 5.914 4 N -0.389 5.389 5 C 0.008 3.992 6 C -0.136 4.136 7 C 0.042 3.958 8 C -0.037 4.037 9 N -0.447 5.447 10 C 0.120 3.880 11 C 0.020 3.980 12 C -0.542 4.542 13 H 0.075 0.925 14 C 0.004 3.996 15 N -0.933 5.933 16 Si 0.967 3.033 17 H -0.272 1.272 18 H -0.288 1.288 19 H -0.258 1.258 20 C 0.184 3.816 21 N -0.504 5.504 22 H 0.100 0.900 23 H 0.088 0.912 24 H 0.094 0.906 25 H 0.214 0.786 26 H 0.189 0.811 27 H 0.096 0.904 28 H 0.107 0.893 29 H -0.003 1.003 30 H -0.009 1.009 31 H 0.264 0.736 32 H 0.229 0.771 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.706 10.131 9.325 14.259 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.078 4.078 3 O 0.025 5.975 4 N -0.096 5.096 5 C -0.171 4.171 6 C -0.141 4.141 7 C -0.086 4.086 8 C -0.173 4.173 9 N -0.126 5.126 10 C -0.001 4.001 11 C -0.018 4.018 12 C -0.580 4.580 13 H 0.094 0.906 14 C -0.195 4.195 15 N -0.572 5.572 16 Si 0.792 3.208 17 H -0.198 1.198 18 H -0.214 1.214 19 H -0.182 1.182 20 C -0.099 4.099 21 N -0.223 5.223 22 H 0.119 0.881 23 H 0.107 0.893 24 H 0.112 0.888 25 H 0.230 0.770 26 H 0.206 0.794 27 H 0.115 0.885 28 H 0.126 0.874 29 H 0.015 0.985 30 H 0.009 0.991 31 H 0.073 0.927 32 H 0.246 0.754 Dipole moment (debyes) X Y Z Total from point charges -3.540 11.461 9.163 15.094 hybrid contribution 0.916 -2.229 -0.646 2.495 sum -2.624 9.232 8.517 12.832 Atomic orbital electron populations 1.20342 0.81413 1.04810 1.04757 1.25060 0.97361 0.84593 1.00749 1.84727 1.11345 1.33224 1.68198 1.73710 0.97682 1.17194 1.20967 1.25298 1.00057 0.89779 1.01998 1.18822 0.92722 0.91500 1.11032 1.17911 0.89723 0.89901 1.11094 1.22914 0.98957 0.85165 1.10286 1.45869 1.07440 1.08025 1.51256 1.22144 1.01687 0.76814 0.99473 1.19260 0.95681 0.95602 0.91267 1.21497 1.44907 0.98339 0.93306 0.90641 1.25955 0.95457 1.02900 0.95173 1.70106 1.49683 1.39252 0.98204 0.85411 0.78487 0.79019 0.77932 1.19765 1.21429 1.18194 1.25441 0.87874 0.92043 1.04568 1.70164 1.22583 1.08125 1.21452 0.88110 0.89323 0.88753 0.76962 0.79415 0.88526 0.87449 0.98506 0.99077 0.92730 0.75435 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.11 9.71 71.24 0.69 -0.42 16 2 C -0.01 -0.35 7.54 25.29 0.19 -0.16 16 3 O 0.09 2.37 11.18 71.14 0.80 3.16 16 4 N -0.39 -11.22 12.04 -58.19 -0.70 -11.93 16 5 C 0.01 0.22 12.05 85.96 1.04 1.26 16 6 C -0.14 -3.99 6.30 -19.92 -0.13 -4.11 16 7 C 0.04 1.35 6.98 40.87 0.29 1.63 16 8 C -0.04 -1.16 11.41 83.33 0.95 -0.21 16 9 N -0.45 -14.47 2.75 -528.16 -1.45 -15.92 16 10 C 0.12 4.04 6.08 86.38 0.53 4.57 16 11 C 0.02 0.92 5.30 29.85 0.16 1.08 16 12 C -0.54 -27.45 9.11 25.60 0.23 -27.22 16 13 H 0.08 3.51 7.74 -2.91 -0.02 3.49 16 14 C 0.00 0.20 5.46 84.66 0.46 0.66 16 15 N -0.93 -54.16 13.29 21.45 0.28 -53.87 16 16 Si 0.97 41.09 29.54 68.60 2.03 43.11 16 17 H -0.27 -11.22 7.11 99.48 0.71 -10.51 16 18 H -0.29 -12.32 7.11 99.48 0.71 -11.62 16 19 H -0.26 -10.27 7.11 99.48 0.71 -9.57 16 20 C 0.18 5.63 12.54 180.28 2.26 7.89 16 21 N -0.50 -16.33 10.60 -189.24 -2.01 -18.33 16 22 H 0.10 1.39 8.14 -2.39 -0.02 1.38 16 23 H 0.09 1.87 8.14 -2.39 -0.02 1.85 16 24 H 0.09 1.85 8.14 -2.38 -0.02 1.84 16 25 H 0.21 4.38 8.06 -2.91 -0.02 4.36 16 26 H 0.19 4.98 8.06 -2.91 -0.02 4.95 16 27 H 0.10 3.00 8.14 -2.39 -0.02 2.98 16 28 H 0.11 3.17 8.14 -2.39 -0.02 3.15 16 29 H 0.00 -0.18 8.14 -2.38 -0.02 -0.20 16 30 H -0.01 -0.49 8.14 -2.39 -0.02 -0.51 16 31 H 0.26 14.52 8.31 -92.71 -0.77 13.75 16 32 H 0.23 5.43 8.06 -2.91 -0.02 5.41 16 Total: -1.00 -64.79 290.40 6.74 -58.06 By element: Atomic # 1 Polarization: 9.63 SS G_CDS: 1.12 Total: 10.76 kcal Atomic # 6 Polarization: -21.70 SS G_CDS: 6.67 Total: -15.03 kcal Atomic # 7 Polarization: -96.18 SS G_CDS: -3.87 Total: -100.06 kcal Atomic # 8 Polarization: 2.37 SS G_CDS: 0.80 Total: 3.16 kcal Atomic # 14 Polarization: 41.09 SS G_CDS: 2.03 Total: 43.11 kcal Total: -64.79 6.74 -58.06 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259694379.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 148.347 kcal (2) G-P(sol) polarization free energy of solvation -64.794 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 83.553 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.737 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.056 kcal (6) G-S(sol) free energy of system = (1) + (5) 90.291 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds