Wall clock time and date at job start Mon Mar 30 2020 06:14:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52999 * 109.47602 * 2 1 4 4 C 1.50695 * 109.47153 * 120.00424 * 2 1 3 5 5 N 1.35619 * 125.35626 * 299.97111 * 4 2 1 6 6 H 0.96997 * 124.69495 * 359.95406 * 5 4 2 7 7 C 1.38239 * 110.60802 * 179.97438 * 5 4 2 8 8 C 1.39117 * 132.76798 * 180.30070 * 7 5 4 9 9 C 1.37852 * 120.00231 * 180.19541 * 8 7 5 10 10 C 1.38863 * 120.60222 * 359.48923 * 9 8 7 11 11 F 1.35097 * 119.90236 * 180.25519 * 10 9 8 12 12 C 1.38083 * 120.19406 * 0.23498 * 10 9 8 13 13 C 1.39207 * 119.67068 * 0.02562 * 12 10 9 14 14 C 1.38903 * 125.35704 * 119.95052 * 4 2 1 15 15 C 1.40883 * 126.92887 * 0.03603 * 14 4 2 16 16 H 1.08002 * 119.99721 * 328.86488 * 15 14 4 17 17 C 1.39736 * 120.00350 * 148.85347 * 15 14 4 18 18 N 1.31055 * 120.00112 * 341.11280 * 17 15 14 19 19 Si 1.86796 * 119.99927 * 161.10735 * 17 15 14 20 20 H 1.48505 * 109.47221 * 90.00334 * 19 17 15 21 21 H 1.48498 * 109.47345 * 210.00443 * 19 17 15 22 22 H 1.48498 * 109.47761 * 330.00528 * 19 17 15 23 23 H 1.09007 * 109.46943 * 299.99790 * 1 2 3 24 24 H 1.08998 * 109.47377 * 59.99887 * 1 2 3 25 25 H 1.08996 * 109.47594 * 179.97438 * 1 2 3 26 26 H 1.09007 * 109.46943 * 240.00210 * 2 1 3 27 27 H 1.08997 * 109.47406 * 180.02562 * 3 2 1 28 28 H 1.09005 * 109.47048 * 300.00767 * 3 2 1 29 29 H 1.08999 * 109.46760 * 59.99831 * 3 2 1 30 30 H 1.07995 * 119.99965 * 359.93718 * 8 7 5 31 31 H 1.08002 * 119.69900 * 179.77073 * 9 8 7 32 32 H 1.07995 * 120.16473 * 180.02562 * 12 10 9 33 33 H 0.96993 * 120.00255 * 185.09161 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0323 -0.7105 1.2304 5 7 1.7729 -0.3428 2.5097 6 1 1.2337 0.4216 2.7660 7 6 2.3838 -1.2081 3.3980 8 6 2.4185 -1.2663 4.7875 9 6 3.1301 -2.2645 5.4181 10 6 3.8082 -3.2246 4.6785 11 9 4.4969 -4.1995 5.3111 12 6 3.7802 -3.1858 3.2985 13 6 3.0691 -2.1789 2.6517 14 6 2.8334 -1.8452 1.2325 15 6 3.3228 -2.5380 0.1076 16 1 2.7467 -2.5602 -0.8056 17 6 4.5537 -3.1962 0.1734 18 7 5.4158 -2.8818 1.1091 19 14 4.9704 -4.5242 -1.0724 20 1 5.6428 -3.9094 -2.2451 21 1 5.8769 -5.5213 -0.4485 22 1 3.7228 -5.1977 -1.5141 23 1 -0.3633 0.5138 0.8901 24 1 -0.3634 0.5138 -0.8899 25 1 -0.3634 -1.0276 -0.0005 26 1 1.8933 -0.5138 -0.8901 27 1 3.1300 1.4424 -0.0005 28 1 1.6767 1.9564 -0.8900 29 1 1.6767 1.9563 0.8900 30 1 1.8914 -0.5271 5.3723 31 1 3.1568 -2.3029 6.4971 32 1 4.3073 -3.9329 2.7239 33 1 6.2980 -3.2849 1.1111 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259696743.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:14:41 Heat of formation + Delta-G solvation = -13.829432 kcal Electronic energy + Delta-G solvation = -17762.822875 eV Core-core repulsion = 14895.364350 eV Total energy + Delta-G solvation = -2867.458525 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 247.107 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -47.75971 -39.85676 -36.06020 -33.67682 -33.60127 -30.44242 -28.48792 -27.42869 -26.61251 -24.84183 -22.42731 -21.00525 -20.01523 -18.87365 -17.02385 -16.53849 -15.46809 -14.91312 -14.85133 -14.51860 -14.15310 -13.87469 -13.31867 -13.02313 -12.72335 -12.48474 -12.29808 -12.15474 -11.76054 -11.54102 -11.30861 -11.08895 -10.78433 -10.65656 -10.45312 -10.19258 -10.01966 -9.99587 -9.42805 -8.98556 -8.36649 -6.91633 -6.67874 -6.39348 -4.03035 2.14807 2.51670 3.06655 3.18586 3.22854 3.92377 4.09683 4.35214 4.81106 5.33490 5.36882 5.52647 5.60592 5.71584 5.86374 5.89804 6.03944 6.19520 6.24610 6.29855 6.40702 6.46476 6.70926 6.77929 6.85879 6.89021 7.00108 7.17069 7.28596 7.32336 7.56212 7.76519 8.10561 8.28166 8.61224 8.75120 9.07078 9.08867 10.44632 Molecular weight = 247.11amu Principal moments of inertia in cm(-1) A = 0.013979 B = 0.012401 C = 0.007036 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2002.493169 B = 2257.404330 C = 3978.587098 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.001 4.001 3 C -0.139 4.139 4 C -0.103 4.103 5 N -0.582 5.582 6 H 0.392 0.608 7 C 0.088 3.912 8 C -0.140 4.140 9 C -0.138 4.138 10 C 0.003 3.997 11 F -0.163 7.163 12 C -0.039 4.039 13 C -0.080 4.080 14 C 0.078 3.922 15 C -0.458 4.458 16 H 0.076 0.924 17 C 0.079 3.921 18 N -0.809 5.809 19 Si 0.897 3.103 20 H -0.273 1.273 21 H -0.279 1.279 22 H -0.263 1.263 23 H 0.040 0.960 24 H 0.045 0.955 25 H 0.053 0.947 26 H 0.087 0.913 27 H 0.057 0.943 28 H 0.044 0.956 29 H 0.040 0.960 30 H 0.108 0.892 31 H 0.116 0.884 32 H 0.131 0.869 33 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.038 3.709 1.089 6.351 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.020 4.020 3 C -0.197 4.197 4 C -0.206 4.206 5 N -0.184 5.184 6 H 0.225 0.775 7 C -0.023 4.023 8 C -0.161 4.161 9 C -0.158 4.158 10 C -0.018 4.018 11 F -0.142 7.142 12 C -0.058 4.058 13 C -0.087 4.087 14 C 0.072 3.928 15 C -0.491 4.491 16 H 0.094 0.906 17 C -0.136 4.136 18 N -0.437 5.437 19 Si 0.722 3.278 20 H -0.199 1.199 21 H -0.204 1.204 22 H -0.187 1.187 23 H 0.060 0.940 24 H 0.064 0.936 25 H 0.073 0.927 26 H 0.105 0.895 27 H 0.076 0.924 28 H 0.063 0.937 29 H 0.059 0.941 30 H 0.126 0.874 31 H 0.134 0.866 32 H 0.149 0.851 33 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -4.879 3.681 1.143 6.218 hybrid contribution 0.286 -0.357 -0.162 0.485 sum -4.593 3.324 0.981 5.754 Atomic orbital electron populations 1.21867 0.96772 1.01319 0.99969 1.19251 0.93250 0.94132 0.95353 1.21818 1.01626 0.96427 0.99784 1.20052 1.16224 1.01305 0.83060 1.40806 1.46772 1.26144 1.04678 0.77471 1.18203 0.99341 0.94160 0.90575 1.19498 1.05077 1.00848 0.90710 1.20339 1.00874 0.96013 0.98582 1.17323 1.02463 0.91237 0.90782 1.91348 1.78587 1.61635 1.82626 1.20612 0.96060 0.98494 0.90640 1.19014 1.00002 0.95224 0.94469 1.17760 0.93842 0.91336 0.89889 1.18510 1.03459 1.29139 0.97945 0.90559 1.25684 0.96132 0.96209 0.95595 1.69914 1.05004 1.37558 1.31229 0.86498 0.79031 0.81360 0.80907 1.19877 1.20368 1.18745 0.94041 0.93614 0.92736 0.89514 0.92422 0.93695 0.94133 0.87391 0.86629 0.85144 0.91317 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.17 9.18 37.16 0.34 -1.83 16 2 C 0.00 -0.01 3.28 -91.78 -0.30 -0.31 16 3 C -0.14 -2.22 9.18 37.16 0.34 -1.88 16 4 C -0.10 -2.24 5.74 -80.67 -0.46 -2.70 16 5 N -0.58 -11.65 5.99 -6.13 -0.04 -11.69 16 6 H 0.39 6.49 8.96 -40.82 -0.37 6.13 16 7 C 0.09 1.94 7.23 -83.87 -0.61 1.33 16 8 C -0.14 -2.72 10.07 -39.40 -0.40 -3.12 16 9 C -0.14 -2.74 9.99 -39.49 -0.39 -3.14 16 10 C 0.00 0.07 7.29 -39.41 -0.29 -0.22 16 11 F -0.16 -3.57 17.26 2.25 0.04 -3.53 16 12 C -0.04 -0.96 8.72 -39.28 -0.34 -1.30 16 13 C -0.08 -2.01 5.78 -104.90 -0.61 -2.62 16 14 C 0.08 1.97 5.72 -104.79 -0.60 1.37 16 15 C -0.46 -11.81 8.74 -38.02 -0.33 -12.14 16 16 H 0.08 1.89 7.45 -52.49 -0.39 1.50 16 17 C 0.08 1.98 4.90 -17.32 -0.08 1.90 16 18 N -0.81 -21.20 10.27 55.54 0.57 -20.63 16 19 Si 0.90 19.03 29.60 -169.99 -5.03 14.00 16 20 H -0.27 -5.71 7.11 56.52 0.40 -5.31 16 21 H -0.28 -5.90 7.11 56.52 0.40 -5.50 16 22 H -0.26 -5.55 7.11 56.52 0.40 -5.15 16 23 H 0.04 0.59 8.14 -51.92 -0.42 0.17 16 24 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 25 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 26 H 0.09 1.68 7.14 -51.92 -0.37 1.31 16 27 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 28 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 29 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 30 H 0.11 1.73 8.06 -52.49 -0.42 1.31 16 31 H 0.12 1.94 8.06 -52.49 -0.42 1.51 16 32 H 0.13 3.38 6.31 -52.49 -0.33 3.04 16 33 H 0.28 6.77 8.31 -40.82 -0.34 6.43 16 LS Contribution 283.41 15.07 4.27 4.27 Total: -1.00 -27.31 283.41 -7.90 -35.21 By element: Atomic # 1 Polarization: 11.01 SS G_CDS: -3.98 Total: 7.03 kcal Atomic # 6 Polarization: -20.93 SS G_CDS: -3.73 Total: -24.66 kcal Atomic # 7 Polarization: -32.85 SS G_CDS: 0.53 Total: -32.32 kcal Atomic # 9 Polarization: -3.57 SS G_CDS: 0.04 Total: -3.53 kcal Atomic # 14 Polarization: 19.03 SS G_CDS: -5.03 Total: 14.00 kcal Total LS contribution 4.27 Total: 4.27 kcal Total: -27.31 -7.90 -35.21 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259696743.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.382 kcal (2) G-P(sol) polarization free energy of solvation -27.315 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.932 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.897 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.212 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.829 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds