Wall clock time and date at job start Mon Mar 30 2020 06:14:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52999 * 109.47602 * 2 1 4 4 C 1.50695 * 109.47153 * 120.00424 * 2 1 3 5 5 N 1.35619 * 125.35626 * 299.97111 * 4 2 1 6 6 H 0.96997 * 124.69495 * 359.95406 * 5 4 2 7 7 C 1.38239 * 110.60802 * 179.97438 * 5 4 2 8 8 C 1.39117 * 132.76798 * 180.30070 * 7 5 4 9 9 C 1.37852 * 120.00231 * 180.19541 * 8 7 5 10 10 C 1.38863 * 120.60222 * 359.48923 * 9 8 7 11 11 F 1.35097 * 119.90236 * 180.25519 * 10 9 8 12 12 C 1.38083 * 120.19406 * 0.23498 * 10 9 8 13 13 C 1.39207 * 119.67068 * 0.02562 * 12 10 9 14 14 C 1.38903 * 125.35704 * 119.95052 * 4 2 1 15 15 C 1.40883 * 126.92887 * 0.03603 * 14 4 2 16 16 H 1.08002 * 119.99721 * 328.86488 * 15 14 4 17 17 C 1.39736 * 120.00350 * 148.85347 * 15 14 4 18 18 N 1.31055 * 120.00112 * 341.11280 * 17 15 14 19 19 Si 1.86796 * 119.99927 * 161.10735 * 17 15 14 20 20 H 1.48505 * 109.47221 * 90.00334 * 19 17 15 21 21 H 1.48498 * 109.47345 * 210.00443 * 19 17 15 22 22 H 1.48498 * 109.47761 * 330.00528 * 19 17 15 23 23 H 1.09007 * 109.46943 * 299.99790 * 1 2 3 24 24 H 1.08998 * 109.47377 * 59.99887 * 1 2 3 25 25 H 1.08996 * 109.47594 * 179.97438 * 1 2 3 26 26 H 1.09007 * 109.46943 * 240.00210 * 2 1 3 27 27 H 1.08997 * 109.47406 * 180.02562 * 3 2 1 28 28 H 1.09005 * 109.47048 * 300.00767 * 3 2 1 29 29 H 1.08999 * 109.46760 * 59.99831 * 3 2 1 30 30 H 1.07995 * 119.99965 * 359.93718 * 8 7 5 31 31 H 1.08002 * 119.69900 * 179.77073 * 9 8 7 32 32 H 1.07995 * 120.16473 * 180.02562 * 12 10 9 33 33 H 0.96993 * 120.00255 * 185.09161 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0323 -0.7105 1.2304 5 7 1.7729 -0.3428 2.5097 6 1 1.2337 0.4216 2.7660 7 6 2.3838 -1.2081 3.3980 8 6 2.4185 -1.2663 4.7875 9 6 3.1301 -2.2645 5.4181 10 6 3.8082 -3.2246 4.6785 11 9 4.4969 -4.1995 5.3111 12 6 3.7802 -3.1858 3.2985 13 6 3.0691 -2.1789 2.6517 14 6 2.8334 -1.8452 1.2325 15 6 3.3228 -2.5380 0.1076 16 1 2.7467 -2.5602 -0.8056 17 6 4.5537 -3.1962 0.1734 18 7 5.4158 -2.8818 1.1091 19 14 4.9704 -4.5242 -1.0724 20 1 5.6428 -3.9094 -2.2451 21 1 5.8769 -5.5213 -0.4485 22 1 3.7228 -5.1977 -1.5141 23 1 -0.3633 0.5138 0.8901 24 1 -0.3634 0.5138 -0.8899 25 1 -0.3634 -1.0276 -0.0005 26 1 1.8933 -0.5138 -0.8901 27 1 3.1300 1.4424 -0.0005 28 1 1.6767 1.9564 -0.8900 29 1 1.6767 1.9563 0.8900 30 1 1.8914 -0.5271 5.3723 31 1 3.1568 -2.3029 6.4971 32 1 4.3073 -3.9329 2.7239 33 1 6.2980 -3.2849 1.1111 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259696743.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:14:41 Heat of formation + Delta-G solvation = -27.830190 kcal Electronic energy + Delta-G solvation = -17763.429994 eV Core-core repulsion = 14895.364350 eV Total energy + Delta-G solvation = -2868.065643 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 247.107 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -49.51997 -41.56470 -37.68082 -35.49592 -35.08566 -32.19983 -30.24815 -29.10939 -27.86997 -26.66528 -24.01679 -22.68736 -21.72301 -20.53940 -18.72290 -18.27430 -17.27676 -16.64102 -16.57328 -16.27485 -15.70651 -15.34473 -14.94697 -14.64641 -14.37575 -14.14088 -13.78121 -13.68198 -13.26806 -13.04344 -12.94416 -12.75990 -12.56211 -12.10852 -12.06751 -11.75174 -11.61477 -11.51516 -11.15233 -10.81922 -10.12532 -8.63122 -8.50775 -8.18382 -5.91102 0.45016 0.78754 1.35087 1.41930 1.52455 2.15942 2.33197 2.71628 3.03941 3.49571 3.68963 4.04477 4.22066 4.25765 4.32539 4.49388 4.68843 4.72491 4.86322 4.87840 5.01972 5.03543 5.14645 5.27723 5.32332 5.41754 5.45553 5.53197 5.55176 5.59623 5.80631 5.99176 6.34788 6.42778 6.78043 7.06477 7.21337 7.36864 8.61842 Molecular weight = 247.11amu Principal moments of inertia in cm(-1) A = 0.013979 B = 0.012401 C = 0.007036 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2002.493169 B = 2257.404330 C = 3978.587098 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.007 4.007 3 C -0.132 4.132 4 C -0.071 4.071 5 N -0.566 5.566 6 H 0.413 0.587 7 C 0.071 3.929 8 C -0.117 4.117 9 C -0.136 4.136 10 C -0.003 4.003 11 F -0.164 7.164 12 C -0.071 4.071 13 C -0.114 4.114 14 C 0.014 3.986 15 C -0.485 4.485 16 H 0.071 0.929 17 C 0.037 3.963 18 N -0.847 5.847 19 Si 0.959 3.041 20 H -0.265 1.265 21 H -0.280 1.280 22 H -0.262 1.262 23 H 0.057 0.943 24 H 0.074 0.926 25 H 0.039 0.961 26 H 0.067 0.933 27 H 0.033 0.967 28 H 0.074 0.926 29 H 0.057 0.943 30 H 0.156 0.844 31 H 0.156 0.844 32 H 0.103 0.897 33 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.948 5.704 2.002 9.209 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.027 4.027 3 C -0.189 4.189 4 C -0.177 4.177 5 N -0.170 5.170 6 H 0.251 0.749 7 C -0.039 4.039 8 C -0.138 4.138 9 C -0.156 4.156 10 C -0.024 4.024 11 F -0.143 7.143 12 C -0.091 4.091 13 C -0.121 4.121 14 C 0.008 3.992 15 C -0.518 4.518 16 H 0.089 0.911 17 C -0.174 4.174 18 N -0.476 5.476 19 Si 0.782 3.218 20 H -0.190 1.190 21 H -0.205 1.205 22 H -0.186 1.186 23 H 0.076 0.924 24 H 0.092 0.908 25 H 0.058 0.942 26 H 0.085 0.915 27 H 0.052 0.948 28 H 0.093 0.907 29 H 0.076 0.924 30 H 0.174 0.826 31 H 0.173 0.827 32 H 0.121 0.879 33 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -6.814 5.699 2.072 9.122 hybrid contribution 0.760 -0.854 -0.372 1.203 sum -6.054 4.845 1.700 7.938 Atomic orbital electron populations 1.21769 0.93874 1.01159 1.02224 1.19407 0.95563 0.95000 0.92708 1.21738 1.00079 0.94947 1.02150 1.20638 1.12611 0.99540 0.84875 1.40740 1.46239 1.26278 1.03739 0.74933 1.18486 0.99627 0.94009 0.91814 1.19990 1.03376 1.00801 0.89670 1.20742 0.99678 0.94784 1.00411 1.17588 1.02626 0.91874 0.90305 1.91337 1.78692 1.61854 1.82395 1.20520 0.97723 0.99063 0.91764 1.19261 1.01281 0.96537 0.95040 1.18192 0.96834 0.93727 0.90463 1.18676 1.04028 1.30823 0.98278 0.91097 1.26337 0.95875 0.97801 0.97375 1.70004 1.05222 1.39188 1.33194 0.85549 0.78574 0.78788 0.78901 1.18958 1.20512 1.18627 0.92405 0.90757 0.94151 0.91450 0.94814 0.90692 0.92438 0.82598 0.82667 0.87933 0.91613 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.67 9.18 71.98 0.66 -3.01 16 2 C -0.01 -0.26 3.28 -11.54 -0.04 -0.29 16 3 C -0.13 -3.86 9.18 71.98 0.66 -3.20 16 4 C -0.07 -3.05 5.74 42.13 0.24 -2.81 16 5 N -0.57 -21.43 5.99 -173.32 -1.04 -22.47 16 6 H 0.41 12.06 8.96 -92.71 -0.83 11.23 16 7 C 0.07 3.04 7.23 38.85 0.28 3.32 16 8 C -0.12 -4.15 10.07 22.39 0.23 -3.92 16 9 C -0.14 -5.03 9.99 22.33 0.22 -4.81 16 10 C 0.00 -0.14 7.29 22.38 0.16 0.02 16 11 F -0.16 -7.21 17.26 44.97 0.78 -6.44 16 12 C -0.07 -3.68 8.72 22.47 0.20 -3.48 16 13 C -0.11 -5.89 5.78 -20.04 -0.12 -6.00 16 14 C 0.01 0.72 5.72 -19.97 -0.11 0.60 16 15 C -0.49 -26.35 8.74 23.28 0.20 -26.15 16 16 H 0.07 3.72 7.45 -2.91 -0.02 3.70 16 17 C 0.04 1.95 4.90 85.17 0.42 2.37 16 18 N -0.85 -47.15 10.27 21.80 0.22 -46.92 16 19 Si 0.96 41.16 29.60 68.60 2.03 43.19 16 20 H -0.26 -10.85 7.11 99.48 0.71 -10.14 16 21 H -0.28 -11.90 7.11 99.48 0.71 -11.19 16 22 H -0.26 -11.02 7.11 99.48 0.71 -10.31 16 23 H 0.06 1.41 8.14 -2.38 -0.02 1.39 16 24 H 0.07 1.66 8.14 -2.39 -0.02 1.64 16 25 H 0.04 1.22 8.14 -2.39 -0.02 1.20 16 26 H 0.07 2.62 7.14 -2.38 -0.02 2.60 16 27 H 0.03 1.13 8.14 -2.39 -0.02 1.11 16 28 H 0.07 1.77 8.14 -2.38 -0.02 1.75 16 29 H 0.06 1.48 8.14 -2.39 -0.02 1.46 16 30 H 0.16 4.03 8.06 -2.91 -0.02 4.01 16 31 H 0.16 4.48 8.06 -2.91 -0.02 4.46 16 32 H 0.10 5.75 6.31 -2.91 -0.02 5.73 16 33 H 0.27 14.36 8.31 -92.71 -0.77 13.59 16 Total: -1.00 -63.08 283.41 5.30 -57.79 By element: Atomic # 1 Polarization: 21.92 SS G_CDS: 0.30 Total: 22.22 kcal Atomic # 6 Polarization: -50.37 SS G_CDS: 3.00 Total: -47.36 kcal Atomic # 7 Polarization: -68.58 SS G_CDS: -0.81 Total: -69.40 kcal Atomic # 9 Polarization: -7.21 SS G_CDS: 0.78 Total: -6.44 kcal Atomic # 14 Polarization: 41.16 SS G_CDS: 2.03 Total: 43.19 kcal Total: -63.08 5.30 -57.79 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259696743.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.956 kcal (2) G-P(sol) polarization free energy of solvation -63.082 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.126 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.296 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.786 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.830 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds