Wall clock time and date at job start Mon Mar 30 2020 05:52:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53000 * 109.47060 * 2 1 4 4 N 1.46499 * 109.46840 * 180.02562 * 3 2 1 5 5 C 1.38072 * 127.17079 * 90.02143 * 4 3 2 6 6 C 1.39573 * 126.50196 * 0.02562 * 5 4 3 7 7 H 1.08003 * 119.99919 * 359.97438 * 6 5 4 8 8 C 1.40148 * 120.00234 * 180.02562 * 6 5 4 9 9 N 1.30750 * 119.99954 * 359.97438 * 8 6 5 10 10 Si 1.86804 * 120.00234 * 179.97438 * 8 6 5 11 11 H 1.48497 * 109.47054 * 359.97438 * 10 8 6 12 12 H 1.48495 * 109.47129 * 119.99758 * 10 8 6 13 13 H 1.48500 * 109.46877 * 239.99874 * 10 8 6 14 14 N 1.33382 * 106.99520 * 179.97438 * 5 4 3 15 15 N 1.28503 * 109.87738 * 359.97438 * 14 5 4 16 16 C 1.32784 * 110.13093 * 359.72501 * 15 14 5 17 17 C 1.46195 * 126.33664 * 180.29627 * 16 15 14 18 18 C 1.38116 * 126.10477 * 344.88319 * 17 16 15 19 19 C 1.40272 * 106.53570 * 179.85302 * 18 17 16 20 20 C 1.35243 * 107.21255 * 0.40606 * 19 18 17 21 21 O 1.34121 * 109.03057 * 359.74466 * 20 19 18 22 22 H 1.09002 * 109.47153 * 300.00319 * 1 2 3 23 23 H 1.08998 * 109.47533 * 59.99948 * 1 2 3 24 24 H 1.08996 * 109.47853 * 180.02562 * 1 2 3 25 25 H 1.09002 * 109.47153 * 239.99681 * 2 1 3 26 26 H 1.09001 * 109.46832 * 119.99872 * 2 1 3 27 27 H 1.09001 * 109.47194 * 299.99650 * 3 2 1 28 28 H 1.08992 * 109.47399 * 59.99823 * 3 2 1 29 29 H 0.97004 * 120.00080 * 180.02562 * 9 8 6 30 30 H 1.08005 * 126.73139 * 359.97160 * 18 17 16 31 31 H 1.08002 * 126.39669 * 180.17734 * 19 18 17 32 32 H 1.07997 * 125.48122 * 179.72300 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5049 1.4425 -0.0006 5 6 4.3387 1.4430 -1.1012 6 6 3.9458 1.4442 -2.4405 7 1 2.8962 1.4444 -2.6953 8 6 4.9131 1.4441 -3.4546 9 7 6.1837 1.4433 -3.1461 10 14 4.3872 1.4450 -5.2471 11 1 2.9044 1.4451 -5.3279 12 1 4.9201 2.6575 -5.9187 13 1 4.9190 0.2325 -5.9195 14 7 5.5909 1.4433 -0.6417 15 7 5.5847 1.4435 0.6433 16 6 4.3358 1.4493 1.0944 17 6 3.9211 1.4576 2.4962 18 6 4.7225 1.1697 3.5837 19 6 3.9139 1.3036 4.7221 20 6 2.6779 1.6504 4.2965 21 8 2.6858 1.7421 2.9584 22 1 -0.3633 0.5139 0.8900 23 1 -0.3634 0.5138 -0.8899 24 1 -0.3635 -1.0276 0.0005 25 1 1.8933 -0.5139 -0.8900 26 1 1.8933 -0.5138 0.8900 27 1 1.6767 1.9563 -0.8900 28 1 1.6766 1.9563 0.8899 29 1 6.8532 1.4436 -3.8480 30 1 5.7673 0.8970 3.5620 31 1 4.2200 1.1537 5.7469 32 1 1.8222 1.8251 4.9318 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259722859.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:52:05 Heat of formation + Delta-G solvation = 69.857493 kcal Electronic energy + Delta-G solvation = -17716.229672 eV Core-core repulsion = 14872.320046 eV Total energy + Delta-G solvation = -2843.909626 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 247.106 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.91982 -40.57431 -35.16506 -33.84175 -32.53140 -31.56401 -30.55992 -28.15663 -25.97197 -25.34886 -22.07842 -21.63783 -21.07600 -20.23825 -19.41765 -17.46208 -16.65029 -15.71400 -15.59013 -15.09573 -14.62327 -14.26579 -14.04775 -13.39173 -12.88090 -12.52501 -12.36596 -12.13993 -11.96693 -11.84806 -11.38920 -11.38631 -11.13060 -10.97369 -10.51438 -10.30963 -9.79814 -9.70868 -9.49097 -8.77350 -8.61187 -8.49764 -7.18991 -6.76230 -4.68098 1.83993 2.83043 2.98820 3.01352 3.06283 3.30285 3.65612 3.77612 3.98823 4.46877 5.15504 5.20704 5.22678 5.35516 5.40998 5.50680 5.64229 5.69589 5.92202 6.02534 6.17027 6.23202 6.29957 6.36856 6.45614 6.59869 6.77285 6.82395 7.00370 7.13929 7.42894 7.70126 7.91492 8.08568 8.59811 8.78188 10.15687 10.54631 Molecular weight = 247.11amu Principal moments of inertia in cm(-1) A = 0.027457 B = 0.007281 C = 0.005922 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1019.532650 B = 3844.485992 C = 4726.978573 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.138 4.138 3 C 0.131 3.869 4 N -0.525 5.525 5 C 0.347 3.653 6 C -0.436 4.436 7 H 0.087 0.913 8 C 0.076 3.924 9 N -0.728 5.728 10 Si 0.922 3.078 11 H -0.260 1.260 12 H -0.271 1.271 13 H -0.271 1.271 14 N -0.327 5.327 15 N -0.243 5.243 16 C 0.102 3.898 17 C 0.114 3.886 18 C -0.205 4.205 19 C -0.200 4.200 20 C -0.075 4.075 21 O -0.179 6.179 22 H 0.052 0.948 23 H 0.055 0.945 24 H 0.054 0.946 25 H 0.071 0.929 26 H 0.060 0.940 27 H 0.081 0.919 28 H 0.076 0.924 29 H 0.282 0.718 30 H 0.150 0.850 31 H 0.144 0.856 32 H 0.196 0.804 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.485 -0.930 5.756 11.133 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.176 4.176 3 C 0.007 3.993 4 N -0.226 5.226 5 C 0.108 3.892 6 C -0.475 4.475 7 H 0.106 0.894 8 C -0.150 4.150 9 N -0.351 5.351 10 Si 0.745 3.255 11 H -0.184 1.184 12 H -0.196 1.196 13 H -0.196 1.196 14 N -0.177 5.177 15 N -0.092 5.092 16 C -0.153 4.153 17 C 0.061 3.939 18 C -0.228 4.228 19 C -0.219 4.219 20 C -0.143 4.143 21 O -0.074 6.074 22 H 0.072 0.928 23 H 0.074 0.926 24 H 0.073 0.927 25 H 0.089 0.911 26 H 0.079 0.921 27 H 0.100 0.900 28 H 0.094 0.906 29 H 0.093 0.907 30 H 0.168 0.832 31 H 0.162 0.838 32 H 0.212 0.788 Dipole moment (debyes) X Y Z Total from point charges -8.011 -0.846 5.518 9.764 hybrid contribution -1.586 -0.035 -0.560 1.682 sum -9.597 -0.881 4.958 10.837 Atomic orbital electron populations 1.21669 0.95365 1.01556 1.01660 1.21868 0.95595 0.97281 1.02898 1.21402 0.78112 0.97076 1.02735 1.46291 1.05999 1.64447 1.05867 1.21472 0.85119 0.94049 0.88531 1.18223 0.94926 1.47909 0.86488 0.89448 1.25867 0.94327 0.93242 1.01591 1.69981 1.00861 1.28954 1.35288 0.86042 0.79986 0.78799 0.80661 1.18396 1.19575 1.19578 1.75741 1.15241 1.29045 0.97697 1.74547 1.15033 1.12450 1.07127 1.20351 0.88708 1.22274 0.83978 1.19146 0.81968 1.02356 0.90399 1.21847 1.01115 1.09757 0.90061 1.21587 0.93752 1.06971 0.99609 1.23882 1.00085 1.09603 0.80781 1.84022 1.31851 1.69242 1.22259 0.92846 0.92562 0.92696 0.91060 0.92119 0.90039 0.90566 0.90695 0.83198 0.83839 0.78767 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.84 9.91 37.16 0.37 -1.47 16 2 C -0.14 -2.32 6.26 -26.73 -0.17 -2.48 16 3 C 0.13 2.50 5.77 -4.04 -0.02 2.48 16 4 N -0.53 -12.75 2.87 -113.55 -0.33 -13.08 16 5 C 0.35 9.56 7.52 -154.91 -1.16 8.40 16 6 C -0.44 -11.24 9.03 -38.37 -0.35 -11.59 16 7 H 0.09 2.05 7.28 -52.48 -0.38 1.66 16 8 C 0.08 1.90 5.50 -17.30 -0.10 1.80 16 9 N -0.73 -19.47 11.92 55.56 0.66 -18.81 16 10 Si 0.92 17.95 29.56 -169.99 -5.03 12.93 16 11 H -0.26 -4.89 7.11 56.52 0.40 -4.49 16 12 H -0.27 -5.20 7.11 56.52 0.40 -4.80 16 13 H -0.27 -5.20 7.11 56.52 0.40 -4.80 16 14 N -0.33 -9.75 10.47 31.21 0.33 -9.42 16 15 N -0.24 -6.83 12.26 32.43 0.40 -6.43 16 16 C 0.10 2.56 7.87 -153.32 -1.21 1.35 16 17 C 0.11 2.43 7.09 -36.43 -0.26 2.18 16 18 C -0.21 -3.88 10.92 -38.86 -0.42 -4.31 16 19 C -0.20 -3.03 10.87 -39.88 -0.43 -3.46 16 20 C -0.08 -1.09 12.07 29.67 0.36 -0.73 16 21 O -0.18 -3.29 8.98 4.45 0.04 -3.25 16 22 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 23 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 24 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 25 H 0.07 1.30 8.14 -51.93 -0.42 0.87 16 26 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 27 H 0.08 1.48 7.51 -51.93 -0.39 1.09 16 28 H 0.08 1.37 6.53 -51.93 -0.34 1.03 16 29 H 0.28 6.74 8.29 -40.82 -0.34 6.41 16 30 H 0.15 2.79 8.06 -52.48 -0.42 2.37 16 31 H 0.14 1.69 8.06 -52.49 -0.42 1.27 16 32 H 0.20 1.90 8.06 -52.49 -0.42 1.48 16 LS Contribution 284.69 15.07 4.29 4.29 Total: -1.00 -31.54 284.69 -6.66 -38.20 By element: Atomic # 1 Polarization: 7.04 SS G_CDS: -3.63 Total: 3.41 kcal Atomic # 6 Polarization: -4.45 SS G_CDS: -3.39 Total: -7.84 kcal Atomic # 7 Polarization: -48.79 SS G_CDS: 1.06 Total: -47.73 kcal Atomic # 8 Polarization: -3.29 SS G_CDS: 0.04 Total: -3.25 kcal Atomic # 14 Polarization: 17.95 SS G_CDS: -5.03 Total: 12.93 kcal Total LS contribution 4.29 Total: 4.29 kcal Total: -31.54 -6.66 -38.20 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259722859.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.056 kcal (2) G-P(sol) polarization free energy of solvation -31.544 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.513 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.655 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.199 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.857 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds