Wall clock time and date at job start Mon Mar 30 2020 05:50:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.30372 * 125.46596 * 2 1 4 4 C 1.34088 * 108.93577 * 179.75077 * 3 2 1 5 5 C 1.35999 * 107.49320 * 0.42945 * 4 3 2 6 6 C 1.47333 * 126.60363 * 179.84264 * 5 4 3 7 7 C 1.37929 * 126.46086 * 179.72366 * 6 5 4 8 8 C 1.39435 * 107.65434 * 179.97438 * 7 6 5 9 9 C 1.50700 * 125.64070 * 180.02562 * 8 7 6 10 10 C 1.52994 * 109.47373 * 125.00272 * 9 8 7 11 11 C 1.50700 * 109.47373 * 180.02562 * 10 9 8 12 12 H 1.07996 * 119.99895 * 359.97438 * 11 10 9 13 13 C 1.37879 * 119.99809 * 179.97438 * 11 10 9 14 14 N 1.31512 * 120.00530 * 359.97438 * 13 11 10 15 15 Si 1.86808 * 119.99663 * 179.97438 * 13 11 10 16 16 H 1.48498 * 109.47007 * 359.97438 * 15 13 11 17 17 H 1.48497 * 109.47137 * 119.99911 * 15 13 11 18 18 H 1.48499 * 109.46866 * 239.99673 * 15 13 11 19 19 N 1.30881 * 108.71544 * 359.72046 * 8 7 6 20 20 N 1.36491 * 126.45598 * 359.68782 * 6 5 4 21 21 H 0.97001 * 126.11672 * 0.02692 * 20 6 5 22 22 O 1.34028 * 125.45751 * 180.02562 * 2 1 3 23 23 H 1.09004 * 109.47270 * 269.98221 * 1 2 3 24 24 H 1.09003 * 109.46612 * 29.97506 * 1 2 3 25 25 H 1.08998 * 109.47526 * 149.97794 * 1 2 3 26 26 H 1.08002 * 126.25501 * 180.29945 * 4 3 2 27 27 H 1.08002 * 126.16799 * 359.97438 * 7 6 5 28 28 H 1.09008 * 109.47249 * 245.00084 * 9 8 7 29 29 H 1.09001 * 109.47526 * 4.99802 * 9 8 7 30 30 H 1.09003 * 109.47230 * 300.00073 * 10 9 8 31 31 H 1.09006 * 109.47435 * 59.99701 * 10 9 8 32 32 H 0.96995 * 120.00598 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2635 1.0618 0.0000 4 6 3.5489 0.6803 0.0055 5 6 3.5718 -0.6795 -0.0007 6 6 4.7692 -1.5379 -0.0011 7 6 4.7889 -2.9171 -0.0021 8 6 6.1236 -3.3209 -0.0028 9 6 6.6094 -4.7474 -0.0045 10 6 7.5568 -4.9621 -1.1865 11 6 8.0422 -6.3888 -1.1885 12 1 7.7086 -7.0738 -0.4231 13 6 8.9121 -6.8196 -2.1677 14 7 9.3179 -5.9857 -3.1001 15 14 9.5143 -8.5880 -2.1697 16 1 8.9149 -9.3163 -1.0228 17 1 9.1129 -9.2461 -3.4390 18 1 10.9942 -8.6070 -2.0488 19 7 6.8845 -2.2560 -0.0084 20 7 6.0680 -1.1183 -0.0014 21 1 6.3711 -0.1969 -0.0009 22 8 2.2845 -1.0917 -0.0005 23 1 -0.3634 -0.0003 1.0277 24 1 -0.3633 0.8903 -0.5135 25 1 -0.3634 -0.8897 -0.5142 26 1 4.4090 1.3335 0.0115 27 1 3.9263 -3.5669 -0.0023 28 1 7.1379 -4.9524 0.9266 29 1 5.7575 -5.4213 -0.0946 30 1 7.0284 -4.7572 -2.1176 31 1 8.4088 -4.2882 -1.0964 32 1 9.9302 -6.2887 -3.7887 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259727096.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:50:25 Heat of formation + Delta-G solvation = 55.435819 kcal Electronic energy + Delta-G solvation = -16492.745596 eV Core-core repulsion = 13648.210600 eV Total energy + Delta-G solvation = -2844.534997 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 247.106 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -44.45692 -42.07647 -36.15903 -35.99292 -34.37334 -33.36727 -31.31415 -31.25937 -28.11729 -27.32255 -24.41987 -23.42068 -23.01076 -21.58478 -20.46453 -19.47281 -18.42180 -17.97440 -17.53776 -16.51856 -16.13600 -15.71517 -15.09351 -14.79169 -14.72602 -14.61885 -14.25155 -13.89689 -13.76499 -13.29908 -13.07724 -12.87159 -12.50318 -12.45279 -12.14531 -11.90574 -11.83071 -11.37141 -11.20964 -10.97104 -10.53891 -10.08331 -9.21442 -8.16962 -6.28895 -0.36638 0.99798 1.03491 1.43083 1.43904 1.47453 1.57759 1.84508 2.08904 2.44303 2.97276 3.16569 3.31488 3.64162 3.77348 4.11620 4.26831 4.44140 4.59122 4.65744 4.68526 4.76139 4.82523 4.92198 4.96922 5.09912 5.25965 5.47485 5.54051 5.70246 5.86523 6.18988 6.24940 6.49721 6.61087 6.88865 7.40515 8.95572 Molecular weight = 247.11amu Principal moments of inertia in cm(-1) A = 0.050087 B = 0.003688 C = 0.003565 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 558.893721 B = 7591.058125 C = 7852.984586 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 C 0.209 3.791 3 N -0.507 5.507 4 C -0.003 4.003 5 C -0.006 4.006 6 C 0.151 3.849 7 C -0.244 4.244 8 C 0.081 3.919 9 C -0.029 4.029 10 C 0.038 3.962 11 C -0.541 4.541 12 H 0.070 0.930 13 C -0.004 4.004 14 N -0.937 5.937 15 Si 0.970 3.030 16 H -0.256 1.256 17 H -0.279 1.279 18 H -0.281 1.281 19 N -0.298 5.298 20 N -0.451 5.451 21 H 0.453 0.547 22 O -0.197 6.197 23 H 0.116 0.884 24 H 0.118 0.882 25 H 0.108 0.892 26 H 0.212 0.788 27 H 0.167 0.833 28 H 0.076 0.924 29 H 0.089 0.911 30 H -0.015 1.015 31 H -0.009 1.009 32 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.930 12.568 7.663 23.198 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C 0.003 3.997 3 N -0.237 5.237 4 C -0.145 4.145 5 C -0.061 4.061 6 C 0.022 3.978 7 C -0.273 4.273 8 C -0.083 4.083 9 C -0.068 4.068 10 C 0.000 4.000 11 C -0.578 4.578 12 H 0.088 0.912 13 C -0.201 4.201 14 N -0.577 5.577 15 Si 0.794 3.206 16 H -0.180 1.180 17 H -0.205 1.205 18 H -0.207 1.207 19 N -0.123 5.123 20 N -0.164 5.164 21 H 0.301 0.699 22 O -0.084 6.084 23 H 0.135 0.865 24 H 0.136 0.864 25 H 0.126 0.874 26 H 0.228 0.772 27 H 0.184 0.816 28 H 0.095 0.905 29 H 0.108 0.892 30 H 0.003 0.997 31 H 0.009 0.991 32 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -16.912 13.552 7.520 22.939 hybrid contribution 0.479 -1.124 -0.433 1.296 sum -16.433 12.428 7.087 21.788 Atomic orbital electron populations 1.20683 0.77364 1.06933 1.06685 1.27597 0.98147 0.77422 0.96521 1.70420 1.02122 1.30700 1.20410 1.23797 0.96256 0.91676 1.02741 1.19810 0.81576 0.92665 1.12061 1.18054 0.83263 0.92047 1.04420 1.21929 0.97547 0.92956 1.14906 1.22620 0.92152 0.96061 0.97482 1.20135 0.99876 0.86813 0.99990 1.18863 0.93237 0.95640 0.92273 1.21746 1.27166 0.97058 1.11876 0.91189 1.26051 0.96508 1.02555 0.95029 1.70140 1.34484 1.37315 1.15760 0.85329 0.77882 0.78937 0.78461 1.18002 1.20460 1.20654 1.77394 1.16968 0.92278 1.25653 1.46428 1.01321 1.09272 1.59409 0.69947 1.84469 1.15504 1.38275 1.70161 0.86536 0.86409 0.87368 0.77154 0.81593 0.90545 0.89249 0.99674 0.99052 0.92886 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.46 10.51 71.24 0.75 0.29 16 2 C 0.21 3.93 8.33 88.33 0.74 4.67 16 3 N -0.51 -11.13 11.27 -302.68 -3.41 -14.54 16 4 C 0.00 -0.07 11.86 83.83 0.99 0.92 16 5 C -0.01 -0.16 7.23 24.14 0.17 0.01 16 6 C 0.15 4.46 7.14 40.74 0.29 4.75 16 7 C -0.24 -8.18 10.73 22.49 0.24 -7.94 16 8 C 0.08 3.22 6.46 42.99 0.28 3.50 16 9 C -0.03 -1.25 5.73 29.85 0.17 -1.08 16 10 C 0.04 2.08 4.92 29.85 0.15 2.23 16 11 C -0.54 -31.19 9.11 25.60 0.23 -30.95 16 12 H 0.07 3.77 7.74 -2.91 -0.02 3.75 16 13 C 0.00 -0.24 5.46 84.66 0.46 0.22 16 14 N -0.94 -58.77 13.29 21.45 0.28 -58.49 16 15 Si 0.97 44.75 29.54 68.60 2.03 46.77 16 16 H -0.26 -11.08 7.11 99.48 0.71 -10.37 16 17 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 18 H -0.28 -12.70 7.11 99.48 0.71 -12.00 16 19 N -0.30 -11.85 12.62 -47.63 -0.60 -12.45 16 20 N -0.45 -13.35 7.43 -48.21 -0.36 -13.70 16 21 H 0.45 9.52 8.96 -213.36 -1.91 7.61 16 22 O -0.20 -4.71 10.80 -8.61 -0.09 -4.80 16 23 H 0.12 0.47 8.14 -2.38 -0.02 0.45 16 24 H 0.12 0.60 8.14 -2.39 -0.02 0.58 16 25 H 0.11 0.52 8.14 -2.39 -0.02 0.50 16 26 H 0.21 3.06 8.06 -2.91 -0.02 3.03 16 27 H 0.17 4.86 8.06 -2.91 -0.02 4.83 16 28 H 0.08 3.16 8.14 -2.38 -0.02 3.14 16 29 H 0.09 3.48 8.11 -2.39 -0.02 3.46 16 30 H -0.02 -0.92 8.14 -2.39 -0.02 -0.94 16 31 H -0.01 -0.55 8.14 -2.38 -0.02 -0.57 16 32 H 0.26 15.39 8.31 -92.71 -0.77 14.62 16 Total: -1.00 -75.86 291.83 1.56 -74.30 By element: Atomic # 1 Polarization: 7.05 SS G_CDS: -0.77 Total: 6.28 kcal Atomic # 6 Polarization: -27.85 SS G_CDS: 4.48 Total: -23.37 kcal Atomic # 7 Polarization: -95.10 SS G_CDS: -4.08 Total: -99.18 kcal Atomic # 8 Polarization: -4.71 SS G_CDS: -0.09 Total: -4.80 kcal Atomic # 14 Polarization: 44.75 SS G_CDS: 2.03 Total: 46.77 kcal Total: -75.86 1.56 -74.30 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259727096.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.740 kcal (2) G-P(sol) polarization free energy of solvation -75.861 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.879 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.557 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.304 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.436 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds