Wall clock time and date at job start Mon Mar 30 2020 05:59:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86799 * 120.00279 * 2 1 4 4 H 1.48498 * 109.47123 * 270.00109 * 3 2 1 5 5 H 1.48506 * 109.46940 * 30.00231 * 3 2 1 6 6 H 1.48493 * 109.47121 * 149.99652 * 3 2 1 7 7 C 1.37875 * 119.99809 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00135 * 0.02562 * 7 2 1 9 9 C 1.50698 * 120.00046 * 179.97438 * 7 2 1 10 10 C 1.53006 * 109.47184 * 180.02562 * 9 7 2 11 11 C 1.52997 * 109.47127 * 180.02562 * 10 9 7 12 12 C 1.50696 * 109.47242 * 180.02562 * 11 10 9 13 13 C 1.34216 * 126.50702 * 265.02904 * 12 11 10 14 14 N 1.36882 * 109.90972 * 179.97438 * 13 12 11 15 15 H 0.97006 * 125.06258 * 179.97438 * 14 13 12 16 16 C 1.37703 * 109.87475 * 0.02562 * 14 13 12 17 17 C 1.39163 * 133.40488 * 179.97438 * 16 14 13 18 18 C 1.37709 * 119.96746 * 179.97438 * 17 16 14 19 19 C 1.38842 * 120.68888 * 0.02864 * 18 17 16 20 20 C 1.37827 * 120.35322 * 359.97438 * 19 18 17 21 21 F 1.35098 * 120.19237 * 180.02562 * 20 19 18 22 22 C 1.39829 * 119.60935 * 359.65108 * 20 19 18 23 23 H 0.97004 * 119.99097 * 359.97438 * 1 2 3 24 24 H 1.09001 * 109.46665 * 60.00499 * 9 7 2 25 25 H 1.08993 * 109.47304 * 300.00055 * 9 7 2 26 26 H 1.09001 * 109.46801 * 300.00442 * 10 9 7 27 27 H 1.09001 * 109.46998 * 60.00038 * 10 9 7 28 28 H 1.08996 * 109.46952 * 300.00302 * 11 10 9 29 29 H 1.09001 * 109.46832 * 60.00321 * 11 10 9 30 30 H 1.07995 * 125.04193 * 0.03234 * 13 12 11 31 31 H 1.08003 * 120.01672 * 359.97438 * 17 16 14 32 32 H 1.07995 * 119.65652 * 179.97438 * 18 17 16 33 33 H 1.07996 * 119.82092 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 2.4968 2.0464 -1.4001 5 1 1.4467 2.6526 0.7001 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 1.4645 -2.1294 0.0005 9 6 3.5115 -1.1941 0.0000 10 6 4.0215 -2.6367 0.0001 11 6 5.5515 -2.6367 0.0001 12 6 6.0538 -4.0575 -0.0004 13 6 6.4080 -4.7796 1.0741 14 7 6.8128 -6.0277 0.6842 15 1 7.1158 -6.7278 1.2834 16 6 6.7270 -6.1411 -0.6855 17 6 7.0085 -7.1698 -1.5794 18 6 6.8165 -6.9795 -2.9297 19 6 6.3435 -5.7675 -3.4143 20 6 6.0580 -4.7345 -2.5477 21 9 5.5975 -3.5567 -3.0227 22 6 6.2405 -4.9155 -1.1732 23 1 -0.4849 0.8402 0.0004 24 1 3.8751 -0.6798 0.8895 25 1 3.8745 -0.6809 -0.8904 26 1 3.6584 -3.1503 0.8903 27 1 3.6578 -3.1507 -0.8897 28 1 5.9148 -2.1229 -0.8898 29 1 5.9147 -2.1229 0.8901 30 1 6.3773 -4.4283 2.0949 31 1 7.3773 -8.1170 -1.2143 32 1 7.0370 -7.7812 -3.6189 33 1 6.1985 -5.6334 -4.4761 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259729388.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:59:41 Heat of formation + Delta-G solvation = -7.775258 kcal Electronic energy + Delta-G solvation = -17027.065681 eV Core-core repulsion = 14159.869685 eV Total energy + Delta-G solvation = -2867.195996 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 247.107 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -48.58022 -41.20023 -36.83270 -34.85399 -32.59652 -31.08848 -29.48339 -29.15236 -26.75164 -23.15115 -22.86330 -22.16159 -20.05595 -19.33258 -18.05144 -16.82914 -16.51908 -15.91043 -15.44265 -15.24722 -14.87626 -14.20208 -14.13726 -14.02786 -13.08546 -12.82652 -12.72568 -12.41168 -12.03901 -11.76791 -11.58424 -11.43146 -11.10804 -10.89602 -10.55686 -9.80814 -9.74807 -9.57359 -9.20898 -9.04997 -8.44548 -8.36232 -7.49062 -5.95398 -3.92262 0.98704 1.45846 2.71431 3.05356 3.38067 3.44397 3.49023 3.71038 4.39917 4.53738 4.64855 4.85393 4.99828 5.07026 5.23224 5.39021 5.48704 5.66983 5.76864 5.89710 6.09264 6.11887 6.28347 6.30939 6.35118 6.64445 6.69116 6.84913 6.86533 7.05701 7.12072 7.45056 7.49130 7.58574 7.90371 8.65115 9.10625 9.67844 11.18418 Molecular weight = 247.11amu Principal moments of inertia in cm(-1) A = 0.032554 B = 0.005169 C = 0.004830 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 859.889956 B = 5415.137046 C = 5795.596509 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.907 5.907 2 C 0.064 3.936 3 Si 0.880 3.120 4 H -0.277 1.277 5 H -0.289 1.289 6 H -0.265 1.265 7 C -0.516 4.516 8 H 0.070 0.930 9 C -0.015 4.015 10 C -0.093 4.093 11 C -0.055 4.055 12 C -0.135 4.135 13 C 0.037 3.963 14 N -0.595 5.595 15 H 0.416 0.584 16 C 0.123 3.877 17 C -0.148 4.148 18 C -0.074 4.074 19 C -0.193 4.193 20 C 0.156 3.844 21 F -0.129 7.129 22 C -0.141 4.141 23 H 0.261 0.739 24 H 0.015 0.985 25 H 0.011 0.989 26 H 0.051 0.949 27 H 0.052 0.948 28 H 0.067 0.933 29 H 0.066 0.934 30 H 0.173 0.827 31 H 0.123 0.877 32 H 0.132 0.868 33 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.542 -14.369 -1.324 22.714 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.136 4.136 3 Si 0.708 3.292 4 H -0.203 1.203 5 H -0.215 1.215 6 H -0.190 1.190 7 C -0.554 4.554 8 H 0.088 0.912 9 C -0.052 4.052 10 C -0.130 4.130 11 C -0.093 4.093 12 C -0.141 4.141 13 C -0.087 4.087 14 N -0.197 5.197 15 H 0.253 0.747 16 C 0.014 3.986 17 C -0.169 4.169 18 C -0.093 4.093 19 C -0.213 4.213 20 C 0.137 3.863 21 F -0.107 7.107 22 C -0.147 4.147 23 H 0.071 0.929 24 H 0.033 0.967 25 H 0.030 0.970 26 H 0.070 0.930 27 H 0.071 0.929 28 H 0.086 0.914 29 H 0.085 0.915 30 H 0.190 0.810 31 H 0.141 0.859 32 H 0.150 0.850 33 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 17.398 -14.254 -1.208 22.524 hybrid contribution 0.315 0.730 0.199 0.819 sum 17.713 -13.524 -1.009 22.308 Atomic orbital electron populations 1.69934 1.06314 1.26716 1.51715 1.25042 0.94718 0.99155 0.94715 0.86767 0.80345 0.83602 0.78515 1.20306 1.21525 1.18978 1.21189 0.89707 0.94371 1.50153 0.91169 1.19600 0.96980 0.92533 0.96127 1.21408 0.91125 0.99453 1.01052 1.20205 0.97641 0.89379 1.02062 1.20516 1.06135 0.97480 0.89970 1.21649 1.03361 0.84241 0.99425 1.41701 1.58917 1.14076 1.05051 0.74725 1.17976 1.01507 0.95316 0.83790 1.19977 1.07226 0.97517 0.92216 1.20547 0.98076 0.96447 0.94224 1.20837 1.07234 0.93419 0.99839 1.17168 0.97078 0.82047 0.90049 1.91537 1.85754 1.44887 1.88531 1.19087 1.07899 0.95533 0.92192 0.92884 0.96720 0.97031 0.93019 0.92924 0.91429 0.91528 0.80974 0.85945 0.85018 0.84868 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -28.91 13.96 55.43 0.77 -28.14 16 2 C 0.06 1.94 5.47 -17.82 -0.10 1.84 16 3 Si 0.88 22.48 27.47 -169.99 -4.67 17.81 16 4 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 5 H -0.29 -7.27 7.11 56.52 0.40 -6.86 16 6 H -0.27 -6.47 6.54 56.52 0.37 -6.10 16 7 C -0.52 -15.41 9.66 -34.44 -0.33 -15.74 16 8 H 0.07 2.25 7.99 -52.48 -0.42 1.84 16 9 C -0.02 -0.38 4.04 -27.88 -0.11 -0.49 16 10 C -0.09 -1.98 5.14 -26.73 -0.14 -2.11 16 11 C -0.05 -0.96 5.70 -27.89 -0.16 -1.12 16 12 C -0.13 -2.12 5.57 -102.71 -0.57 -2.69 16 13 C 0.04 0.46 11.74 -16.71 -0.20 0.27 16 14 N -0.59 -6.30 6.07 -10.65 -0.06 -6.37 16 15 H 0.42 2.82 8.96 -40.82 -0.37 2.45 16 16 C 0.12 1.57 7.27 -84.00 -0.61 0.96 16 17 C -0.15 -1.56 10.07 -39.43 -0.40 -1.95 16 18 C -0.07 -0.76 10.01 -39.55 -0.40 -1.15 16 19 C -0.19 -2.42 10.01 -39.51 -0.40 -2.81 16 20 C 0.16 2.47 7.34 -39.14 -0.29 2.18 16 21 F -0.13 -2.29 16.89 2.25 0.04 -2.26 16 22 C -0.14 -2.23 6.33 -105.09 -0.67 -2.89 16 23 H 0.26 7.78 8.31 -40.82 -0.34 7.44 16 24 H 0.01 0.36 7.20 -51.93 -0.37 -0.02 16 25 H 0.01 0.29 7.57 -51.93 -0.39 -0.11 16 26 H 0.05 1.09 8.14 -51.93 -0.42 0.66 16 27 H 0.05 1.19 8.14 -51.93 -0.42 0.77 16 28 H 0.07 1.22 7.81 -51.93 -0.41 0.81 16 29 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 30 H 0.17 1.62 8.06 -52.49 -0.42 1.19 16 31 H 0.12 0.92 8.06 -52.48 -0.42 0.50 16 32 H 0.13 0.93 8.06 -52.49 -0.42 0.50 16 33 H 0.13 1.40 8.06 -52.49 -0.42 0.98 16 LS Contribution 287.98 15.07 4.34 4.34 Total: -1.00 -34.19 287.98 -8.03 -42.21 By element: Atomic # 1 Polarization: 2.20 SS G_CDS: -4.08 Total: -1.89 kcal Atomic # 6 Polarization: -21.36 SS G_CDS: -4.36 Total: -25.72 kcal Atomic # 7 Polarization: -35.21 SS G_CDS: 0.71 Total: -34.51 kcal Atomic # 9 Polarization: -2.29 SS G_CDS: 0.04 Total: -2.26 kcal Atomic # 14 Polarization: 22.48 SS G_CDS: -4.67 Total: 17.81 kcal Total LS contribution 4.34 Total: 4.34 kcal Total: -34.19 -8.03 -42.21 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259729388.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.438 kcal (2) G-P(sol) polarization free energy of solvation -34.188 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.250 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.025 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.214 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.775 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds