Wall clock time and date at job start Mon Mar 30 2020 05:59:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86799 * 120.00279 * 2 1 4 4 H 1.48498 * 109.47123 * 270.00109 * 3 2 1 5 5 H 1.48506 * 109.46940 * 30.00231 * 3 2 1 6 6 H 1.48493 * 109.47121 * 149.99652 * 3 2 1 7 7 C 1.37875 * 119.99809 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00135 * 0.02562 * 7 2 1 9 9 C 1.50698 * 120.00046 * 179.97438 * 7 2 1 10 10 C 1.53006 * 109.47184 * 180.02562 * 9 7 2 11 11 C 1.52997 * 109.47127 * 180.02562 * 10 9 7 12 12 C 1.50696 * 109.47242 * 180.02562 * 11 10 9 13 13 C 1.34216 * 126.50702 * 265.02904 * 12 11 10 14 14 N 1.36882 * 109.90972 * 179.97438 * 13 12 11 15 15 H 0.97006 * 125.06258 * 179.97438 * 14 13 12 16 16 C 1.37703 * 109.87475 * 0.02562 * 14 13 12 17 17 C 1.39163 * 133.40488 * 179.97438 * 16 14 13 18 18 C 1.37709 * 119.96746 * 179.97438 * 17 16 14 19 19 C 1.38842 * 120.68888 * 0.02864 * 18 17 16 20 20 C 1.37827 * 120.35322 * 359.97438 * 19 18 17 21 21 F 1.35098 * 120.19237 * 180.02562 * 20 19 18 22 22 C 1.39829 * 119.60935 * 359.65108 * 20 19 18 23 23 H 0.97004 * 119.99097 * 359.97438 * 1 2 3 24 24 H 1.09001 * 109.46665 * 60.00499 * 9 7 2 25 25 H 1.08993 * 109.47304 * 300.00055 * 9 7 2 26 26 H 1.09001 * 109.46801 * 300.00442 * 10 9 7 27 27 H 1.09001 * 109.46998 * 60.00038 * 10 9 7 28 28 H 1.08996 * 109.46952 * 300.00302 * 11 10 9 29 29 H 1.09001 * 109.46832 * 60.00321 * 11 10 9 30 30 H 1.07995 * 125.04193 * 0.03234 * 13 12 11 31 31 H 1.08003 * 120.01672 * 359.97438 * 17 16 14 32 32 H 1.07995 * 119.65652 * 179.97438 * 18 17 16 33 33 H 1.07996 * 119.82092 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 2.4968 2.0464 -1.4001 5 1 1.4467 2.6526 0.7001 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 1.4645 -2.1294 0.0005 9 6 3.5115 -1.1941 0.0000 10 6 4.0215 -2.6367 0.0001 11 6 5.5515 -2.6367 0.0001 12 6 6.0538 -4.0575 -0.0004 13 6 6.4080 -4.7796 1.0741 14 7 6.8128 -6.0277 0.6842 15 1 7.1158 -6.7278 1.2834 16 6 6.7270 -6.1411 -0.6855 17 6 7.0085 -7.1698 -1.5794 18 6 6.8165 -6.9795 -2.9297 19 6 6.3435 -5.7675 -3.4143 20 6 6.0580 -4.7345 -2.5477 21 9 5.5975 -3.5567 -3.0227 22 6 6.2405 -4.9155 -1.1732 23 1 -0.4849 0.8402 0.0004 24 1 3.8751 -0.6798 0.8895 25 1 3.8745 -0.6809 -0.8904 26 1 3.6584 -3.1503 0.8903 27 1 3.6578 -3.1507 -0.8897 28 1 5.9148 -2.1229 -0.8898 29 1 5.9147 -2.1229 0.8901 30 1 6.3773 -4.4283 2.0949 31 1 7.3773 -8.1170 -1.2143 32 1 7.0370 -7.7812 -3.6189 33 1 6.1985 -5.6334 -4.4761 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259729388.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:59:41 Heat of formation + Delta-G solvation = -28.811804 kcal Electronic energy + Delta-G solvation = -17027.977894 eV Core-core repulsion = 14159.869685 eV Total energy + Delta-G solvation = -2868.108209 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 247.107 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -49.77148 -42.14685 -37.77006 -36.53511 -34.56008 -32.55412 -30.52361 -30.35388 -28.30352 -24.94480 -23.81572 -23.08707 -21.96733 -20.45420 -19.19129 -18.68209 -17.77662 -16.93506 -16.60862 -16.33576 -16.26800 -15.86438 -15.52464 -15.22032 -14.81651 -14.18668 -13.90509 -13.81303 -13.75648 -13.23032 -12.74753 -12.67201 -12.51218 -12.32353 -12.06934 -11.76710 -11.53507 -11.39247 -11.31609 -10.76274 -10.35248 -9.29613 -8.49375 -8.29454 -6.33711 0.02671 0.52359 1.35912 1.37941 1.50724 1.69000 2.21345 2.37106 2.75895 3.05667 3.42246 3.73345 3.99224 4.05649 4.08404 4.37265 4.39276 4.49120 4.62264 4.69531 4.83592 4.90709 4.99977 5.10634 5.15099 5.23663 5.37926 5.46187 5.53309 5.62486 5.63857 5.72000 5.77584 6.14535 6.29717 6.73224 6.73793 7.30733 8.87817 Molecular weight = 247.11amu Principal moments of inertia in cm(-1) A = 0.032554 B = 0.005169 C = 0.004830 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 859.889956 B = 5415.137046 C = 5795.596509 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.954 5.954 2 C 0.002 3.998 3 Si 0.954 3.046 4 H -0.270 1.270 5 H -0.280 1.280 6 H -0.242 1.242 7 C -0.535 4.535 8 H 0.025 0.975 9 C -0.011 4.011 10 C -0.081 4.081 11 C -0.040 4.040 12 C -0.190 4.190 13 C 0.068 3.932 14 N -0.577 5.577 15 H 0.437 0.563 16 C 0.110 3.890 17 C -0.133 4.133 18 C -0.074 4.074 19 C -0.188 4.188 20 C 0.102 3.898 21 F -0.156 7.156 22 C -0.172 4.172 23 H 0.267 0.733 24 H 0.028 0.972 25 H 0.011 0.989 26 H 0.049 0.951 27 H 0.024 0.976 28 H 0.052 0.948 29 H 0.086 0.914 30 H 0.206 0.794 31 H 0.163 0.837 32 H 0.172 0.828 33 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.331 -15.601 -0.380 25.629 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.595 5.595 2 C -0.194 4.194 3 Si 0.777 3.223 4 H -0.195 1.195 5 H -0.205 1.205 6 H -0.165 1.165 7 C -0.572 4.572 8 H 0.043 0.957 9 C -0.049 4.049 10 C -0.119 4.119 11 C -0.078 4.078 12 C -0.197 4.197 13 C -0.058 4.058 14 N -0.182 5.182 15 H 0.278 0.722 16 C 0.001 3.999 17 C -0.154 4.154 18 C -0.093 4.093 19 C -0.208 4.208 20 C 0.082 3.918 21 F -0.135 7.135 22 C -0.178 4.178 23 H 0.075 0.925 24 H 0.047 0.953 25 H 0.030 0.970 26 H 0.068 0.932 27 H 0.043 0.957 28 H 0.070 0.930 29 H 0.105 0.895 30 H 0.223 0.777 31 H 0.180 0.820 32 H 0.190 0.810 33 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges 20.213 -15.538 -0.255 25.496 hybrid contribution -0.598 0.928 -0.106 1.109 sum 19.615 -14.609 -0.361 24.460 Atomic orbital electron populations 1.70089 1.08382 1.28198 1.52831 1.26079 0.95684 1.03708 0.93959 0.85596 0.79665 0.77842 0.79190 1.19479 1.20515 1.16540 1.21529 0.92357 0.92964 1.50399 0.95657 1.19554 0.93714 0.95139 0.96459 1.21228 0.94467 0.96647 0.99547 1.19911 0.94121 0.91500 1.02230 1.20426 1.10315 0.97269 0.91650 1.22068 0.99871 0.84042 0.99865 1.41683 1.57730 1.14059 1.04684 0.72188 1.18275 1.01787 0.94945 0.84846 1.20493 1.04878 0.98144 0.91867 1.21041 0.96860 0.96288 0.95108 1.21191 1.05878 0.93468 1.00240 1.17710 1.00400 0.82432 0.91232 1.91451 1.86630 1.46548 1.88852 1.19427 1.08889 0.97158 0.92333 0.92464 0.95329 0.97033 0.93203 0.95733 0.92957 0.89521 0.77700 0.81993 0.81046 0.83622 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -62.59 13.96 21.45 0.30 -62.29 16 2 C 0.00 0.12 5.47 84.65 0.46 0.58 16 3 Si 0.95 46.38 27.47 68.60 1.88 48.26 16 4 H -0.27 -12.72 7.11 99.48 0.71 -12.01 16 5 H -0.28 -13.09 7.11 99.48 0.71 -12.38 16 6 H -0.24 -10.80 6.54 99.48 0.65 -10.15 16 7 C -0.53 -33.17 9.66 25.60 0.25 -32.92 16 8 H 0.03 1.73 7.99 -2.91 -0.02 1.70 16 9 C -0.01 -0.58 4.04 29.85 0.12 -0.45 16 10 C -0.08 -3.58 5.14 30.60 0.16 -3.42 16 11 C -0.04 -1.40 5.70 29.85 0.17 -1.23 16 12 C -0.19 -5.92 5.57 -18.63 -0.10 -6.02 16 13 C 0.07 1.50 11.74 82.99 0.97 2.48 16 14 N -0.58 -10.40 6.07 -187.61 -1.14 -11.54 16 15 H 0.44 4.08 8.96 -92.70 -0.83 3.25 16 16 C 0.11 2.58 7.27 39.02 0.28 2.86 16 17 C -0.13 -2.31 10.07 22.37 0.23 -2.09 16 18 C -0.07 -1.30 10.01 22.29 0.22 -1.07 16 19 C -0.19 -4.60 10.01 22.32 0.22 -4.37 16 20 C 0.10 3.34 7.34 22.56 0.17 3.51 16 21 F -0.16 -6.03 16.89 44.97 0.76 -5.27 16 22 C -0.17 -5.46 6.33 -20.16 -0.13 -5.58 16 23 H 0.27 16.19 8.31 -92.71 -0.77 15.42 16 24 H 0.03 1.37 7.20 -2.39 -0.02 1.35 16 25 H 0.01 0.58 7.57 -2.39 -0.02 0.56 16 26 H 0.05 2.16 8.14 -2.39 -0.02 2.14 16 27 H 0.02 1.18 8.14 -2.39 -0.02 1.16 16 28 H 0.05 1.96 7.81 -2.39 -0.02 1.94 16 29 H 0.09 2.62 8.14 -2.39 -0.02 2.60 16 30 H 0.21 3.04 8.06 -2.91 -0.02 3.02 16 31 H 0.16 1.52 8.06 -2.91 -0.02 1.49 16 32 H 0.17 1.61 8.06 -2.91 -0.02 1.58 16 33 H 0.15 3.01 8.06 -2.91 -0.02 2.98 16 Total: -1.00 -78.98 287.98 5.06 -73.92 By element: Atomic # 1 Polarization: 4.42 SS G_CDS: 0.23 Total: 4.66 kcal Atomic # 6 Polarization: -50.76 SS G_CDS: 3.02 Total: -47.74 kcal Atomic # 7 Polarization: -72.99 SS G_CDS: -0.84 Total: -73.83 kcal Atomic # 9 Polarization: -6.03 SS G_CDS: 0.76 Total: -5.27 kcal Atomic # 14 Polarization: 46.38 SS G_CDS: 1.88 Total: 48.26 kcal Total: -78.98 5.06 -73.92 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259729388.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.112 kcal (2) G-P(sol) polarization free energy of solvation -78.983 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.871 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.059 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.924 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.812 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds