Wall clock time and date at job start Mon Mar 30 2020 06:20:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09000 * 109.47011 * 2 1 4 4 C 1.50701 * 109.47000 * 239.99279 * 2 1 3 5 5 H 1.08002 * 119.99761 * 239.99828 * 4 2 1 6 6 C 1.37871 * 119.99694 * 60.28391 * 4 2 1 7 7 N 1.31514 * 120.00482 * 359.71466 * 6 4 2 8 8 Si 1.86801 * 119.99746 * 179.72062 * 6 4 2 9 9 H 1.48504 * 109.47266 * 60.00049 * 8 6 4 10 10 H 1.48504 * 109.46970 * 179.97438 * 8 6 4 11 11 H 1.48499 * 109.47383 * 299.99456 * 8 6 4 12 12 C 1.50703 * 109.46654 * 119.99604 * 2 1 3 13 13 C 1.34212 * 125.03815 * 84.69644 * 12 2 1 14 14 C 1.46528 * 106.99853 * 179.89062 * 13 12 2 15 15 C 1.39635 * 133.98724 * 180.09790 * 14 13 12 16 16 C 1.36609 * 119.79976 * 180.29193 * 15 14 13 17 17 C 1.39030 * 120.50218 * 0.02562 * 16 15 14 18 18 F 1.35102 * 119.69407 * 180.02562 * 17 16 15 19 19 C 1.37956 * 120.61056 * 0.02562 * 17 16 15 20 20 C 1.39115 * 119.76023 * 359.97438 * 19 17 16 21 21 N 1.36899 * 125.03833 * 264.99571 * 12 2 1 22 22 C 1.46507 * 125.06573 * 359.97438 * 21 12 2 23 23 H 1.08995 * 109.47438 * 179.97438 * 1 2 3 24 24 H 1.08996 * 109.47069 * 300.00816 * 1 2 3 25 25 H 1.09004 * 109.46658 * 60.00195 * 1 2 3 26 26 H 0.96995 * 120.00207 * 179.97438 * 7 6 4 27 27 H 1.07998 * 126.49637 * 359.97438 * 13 12 2 28 28 H 1.07996 * 120.10099 * 0.31701 * 15 14 13 29 29 H 1.07996 * 119.74810 * 180.02562 * 16 15 14 30 30 H 1.08000 * 120.11410 * 179.97438 * 19 17 16 31 31 H 1.08996 * 109.47266 * 89.99664 * 22 21 12 32 32 H 1.08998 * 109.46446 * 209.99522 * 22 21 12 33 33 H 1.09000 * 109.46523 * 329.99485 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7106 -1.2304 5 1 2.6533 -1.5887 -1.1311 6 6 1.7041 -0.2362 -2.4826 7 7 0.9480 0.8330 -2.6035 8 14 2.3331 -1.1125 -4.0077 9 1 1.8387 -2.5128 -4.0135 10 1 1.8422 -0.4097 -5.2203 11 1 3.8181 -1.1118 -4.0019 12 6 2.0323 -0.7104 1.2306 13 6 2.1933 -2.0381 1.3420 14 6 2.6997 -2.2963 2.6926 15 6 3.0563 -3.4523 3.3900 16 6 3.5011 -3.3579 4.6782 17 6 3.6013 -2.1190 5.3012 18 9 4.0437 -2.0446 6.5756 19 6 3.2530 -0.9651 4.6302 20 6 2.7977 -1.0401 3.3178 21 7 2.3864 -0.0975 2.4024 22 6 2.3340 1.3461 2.6465 23 1 -0.3634 -1.0276 -0.0005 24 1 -0.3633 0.5139 0.8899 25 1 -0.3633 0.5138 -0.8901 26 1 0.7173 1.1669 -3.4844 27 1 1.9897 -2.7761 0.5803 28 1 2.9811 -4.4179 2.9124 29 1 3.7771 -4.2524 5.2167 30 1 3.3335 -0.0070 5.1221 31 1 1.3557 1.6117 3.0471 32 1 3.1073 1.6215 3.3637 33 1 2.5002 1.8791 1.7103 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259736638.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:20:25 Heat of formation + Delta-G solvation = 4.266639 kcal Electronic energy + Delta-G solvation = -17368.086074 eV Core-core repulsion = 14501.412254 eV Total energy + Delta-G solvation = -2866.673820 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 247.107 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -48.60506 -40.87112 -36.74075 -34.22703 -32.24907 -30.84443 -30.05129 -27.34397 -25.81901 -25.14419 -22.85087 -21.37366 -20.92851 -18.97222 -17.09314 -16.35936 -16.18978 -15.60019 -15.39291 -14.79102 -14.72273 -14.46896 -13.92521 -13.20026 -12.97743 -12.62050 -12.42065 -12.29971 -11.92354 -11.75327 -11.38485 -11.10800 -10.96209 -10.68429 -10.65723 -10.34030 -10.20311 -9.82317 -9.19177 -9.05483 -8.48743 -7.65164 -7.01998 -6.13298 -4.19483 1.37083 1.80802 3.23868 3.27307 3.31867 3.35005 3.40365 4.14069 4.35608 4.60281 4.94214 5.12903 5.19416 5.23643 5.48800 5.52752 5.55886 5.74915 5.82758 5.93443 6.28117 6.36631 6.50580 6.60860 6.65669 6.79069 6.90426 7.00662 7.18769 7.26207 7.53477 7.67621 7.76134 7.89072 7.99458 8.27782 8.82436 9.45994 10.93477 Molecular weight = 247.11amu Principal moments of inertia in cm(-1) A = 0.036342 B = 0.005753 C = 0.005243 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 770.267850 B = 4865.537489 C = 5339.367888 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.096 3.904 3 H 0.036 0.964 4 C -0.510 4.510 5 H 0.065 0.935 6 C 0.063 3.937 7 N -0.891 5.891 8 Si 0.898 3.102 9 H -0.275 1.275 10 H -0.287 1.287 11 H -0.276 1.276 12 C 0.137 3.863 13 C -0.212 4.212 14 C -0.109 4.109 15 C -0.048 4.048 16 C -0.187 4.187 17 C 0.094 3.906 18 F -0.149 7.149 19 C -0.163 4.163 20 C 0.107 3.893 21 N -0.485 5.485 22 C 0.078 3.922 23 H 0.034 0.966 24 H 0.007 0.993 25 H 0.090 0.910 26 H 0.263 0.737 27 H 0.148 0.852 28 H 0.128 0.872 29 H 0.127 0.873 30 H 0.123 0.877 31 H 0.065 0.935 32 H 0.072 0.928 33 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.391 -2.440 10.554 11.093 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.076 3.924 3 H 0.054 0.946 4 C -0.548 4.548 5 H 0.083 0.917 6 C -0.139 4.139 7 N -0.530 5.530 8 Si 0.726 3.274 9 H -0.200 1.200 10 H -0.213 1.213 11 H -0.202 1.202 12 C 0.032 3.968 13 C -0.234 4.234 14 C -0.114 4.114 15 C -0.066 4.066 16 C -0.207 4.207 17 C 0.074 3.926 18 F -0.127 7.127 19 C -0.185 4.185 20 C 0.000 4.000 21 N -0.168 5.168 22 C -0.064 4.064 23 H 0.053 0.947 24 H 0.026 0.974 25 H 0.108 0.892 26 H 0.073 0.927 27 H 0.166 0.834 28 H 0.146 0.854 29 H 0.145 0.855 30 H 0.141 0.859 31 H 0.083 0.917 32 H 0.091 0.909 33 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 2.294 -1.954 10.473 10.898 hybrid contribution 0.425 -0.256 -0.522 0.720 sum 2.718 -2.211 9.951 10.550 Atomic orbital electron populations 1.21764 0.96697 0.99948 1.00350 1.17641 0.93041 0.95242 0.86430 0.94570 1.21052 1.31649 1.12760 0.89330 0.91689 1.24937 0.94894 0.94957 0.99081 1.69857 1.36523 1.22766 1.23831 0.86549 0.79262 0.79788 0.81833 1.20040 1.21274 1.20191 1.21620 0.95673 0.92778 0.86764 1.21415 1.11996 0.95087 0.94942 1.19455 1.04385 0.91887 0.95699 1.20058 0.96512 0.97305 0.92749 1.20429 1.07889 0.95910 0.96471 1.17045 1.02259 0.93934 0.79347 1.91435 1.87461 1.97261 1.36594 1.19657 1.07922 0.97761 0.93132 1.17818 1.01915 0.89255 0.91004 1.44025 1.56082 1.05737 1.10988 1.21887 1.02163 0.78852 1.03480 0.94692 0.97412 0.89155 0.92720 0.83421 0.85448 0.85536 0.85861 0.91669 0.90940 0.89164 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.97 8.95 37.16 0.33 -2.63 16 2 C 0.10 2.26 2.45 -92.92 -0.23 2.03 16 3 H 0.04 0.90 6.78 -51.93 -0.35 0.55 16 4 C -0.51 -13.17 8.20 -34.44 -0.28 -13.45 16 5 H 0.06 1.67 6.77 -52.49 -0.36 1.32 16 6 C 0.06 1.65 5.31 -17.82 -0.09 1.55 16 7 N -0.89 -24.00 11.33 55.43 0.63 -23.37 16 8 Si 0.90 20.42 29.54 -169.99 -5.02 15.40 16 9 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 10 H -0.29 -6.50 7.11 56.52 0.40 -6.10 16 11 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 12 C 0.14 2.93 5.77 -81.75 -0.47 2.46 16 13 C -0.21 -4.36 9.90 -37.66 -0.37 -4.73 16 14 C -0.11 -2.03 6.37 -105.12 -0.67 -2.70 16 15 C -0.05 -0.75 10.05 -39.65 -0.40 -1.14 16 16 C -0.19 -2.73 9.95 -39.88 -0.40 -3.12 16 17 C 0.09 1.47 7.28 -39.39 -0.29 1.18 16 18 F -0.15 -2.24 17.25 2.25 0.04 -2.20 16 19 C -0.16 -2.61 9.93 -39.36 -0.39 -3.00 16 20 C 0.11 1.96 6.81 -84.00 -0.57 1.39 16 21 N -0.49 -9.09 3.18 -117.18 -0.37 -9.46 16 22 C 0.08 1.15 10.80 59.85 0.65 1.80 16 23 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 24 H 0.01 0.14 8.14 -51.93 -0.42 -0.28 16 25 H 0.09 2.25 6.08 -51.93 -0.32 1.94 16 26 H 0.26 6.80 8.31 -40.82 -0.34 6.46 16 27 H 0.15 3.00 7.58 -52.49 -0.40 2.60 16 28 H 0.13 1.67 8.06 -52.49 -0.42 1.25 16 29 H 0.13 1.51 8.06 -52.49 -0.42 1.09 16 30 H 0.12 1.71 8.06 -52.49 -0.42 1.29 16 31 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 32 H 0.07 0.88 8.10 -51.93 -0.42 0.46 16 33 H 0.09 1.37 6.81 -51.93 -0.35 1.02 16 LS Contribution 283.43 15.07 4.27 4.27 Total: -1.00 -27.50 283.43 -7.51 -35.01 By element: Atomic # 1 Polarization: 4.60 SS G_CDS: -3.87 Total: 0.73 kcal Atomic # 6 Polarization: -17.20 SS G_CDS: -3.18 Total: -20.39 kcal Atomic # 7 Polarization: -33.09 SS G_CDS: 0.26 Total: -32.83 kcal Atomic # 9 Polarization: -2.24 SS G_CDS: 0.04 Total: -2.20 kcal Atomic # 14 Polarization: 20.42 SS G_CDS: -5.02 Total: 15.40 kcal Total LS contribution 4.27 Total: 4.27 kcal Total: -27.50 -7.51 -35.01 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259736638.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.278 kcal (2) G-P(sol) polarization free energy of solvation -27.505 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.773 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.507 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.011 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.267 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds