Wall clock time and date at job start Mon Mar 30 2020 06:20:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09000 * 109.47011 * 2 1 4 4 C 1.50701 * 109.47000 * 239.99279 * 2 1 3 5 5 H 1.08002 * 119.99761 * 239.99828 * 4 2 1 6 6 C 1.37871 * 119.99694 * 60.28391 * 4 2 1 7 7 N 1.31514 * 120.00482 * 359.71466 * 6 4 2 8 8 Si 1.86801 * 119.99746 * 179.72062 * 6 4 2 9 9 H 1.48504 * 109.47266 * 60.00049 * 8 6 4 10 10 H 1.48504 * 109.46970 * 179.97438 * 8 6 4 11 11 H 1.48499 * 109.47383 * 299.99456 * 8 6 4 12 12 C 1.50703 * 109.46654 * 119.99604 * 2 1 3 13 13 C 1.34212 * 125.03815 * 84.69644 * 12 2 1 14 14 C 1.46528 * 106.99853 * 179.89062 * 13 12 2 15 15 C 1.39635 * 133.98724 * 180.09790 * 14 13 12 16 16 C 1.36609 * 119.79976 * 180.29193 * 15 14 13 17 17 C 1.39030 * 120.50218 * 0.02562 * 16 15 14 18 18 F 1.35102 * 119.69407 * 180.02562 * 17 16 15 19 19 C 1.37956 * 120.61056 * 0.02562 * 17 16 15 20 20 C 1.39115 * 119.76023 * 359.97438 * 19 17 16 21 21 N 1.36899 * 125.03833 * 264.99571 * 12 2 1 22 22 C 1.46507 * 125.06573 * 359.97438 * 21 12 2 23 23 H 1.08995 * 109.47438 * 179.97438 * 1 2 3 24 24 H 1.08996 * 109.47069 * 300.00816 * 1 2 3 25 25 H 1.09004 * 109.46658 * 60.00195 * 1 2 3 26 26 H 0.96995 * 120.00207 * 179.97438 * 7 6 4 27 27 H 1.07998 * 126.49637 * 359.97438 * 13 12 2 28 28 H 1.07996 * 120.10099 * 0.31701 * 15 14 13 29 29 H 1.07996 * 119.74810 * 180.02562 * 16 15 14 30 30 H 1.08000 * 120.11410 * 179.97438 * 19 17 16 31 31 H 1.08996 * 109.47266 * 89.99664 * 22 21 12 32 32 H 1.08998 * 109.46446 * 209.99522 * 22 21 12 33 33 H 1.09000 * 109.46523 * 329.99485 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7106 -1.2304 5 1 2.6533 -1.5887 -1.1311 6 6 1.7041 -0.2362 -2.4826 7 7 0.9480 0.8330 -2.6035 8 14 2.3331 -1.1125 -4.0077 9 1 1.8387 -2.5128 -4.0135 10 1 1.8422 -0.4097 -5.2203 11 1 3.8181 -1.1118 -4.0019 12 6 2.0323 -0.7104 1.2306 13 6 2.1933 -2.0381 1.3420 14 6 2.6997 -2.2963 2.6926 15 6 3.0563 -3.4523 3.3900 16 6 3.5011 -3.3579 4.6782 17 6 3.6013 -2.1190 5.3012 18 9 4.0437 -2.0446 6.5756 19 6 3.2530 -0.9651 4.6302 20 6 2.7977 -1.0401 3.3178 21 7 2.3864 -0.0975 2.4024 22 6 2.3340 1.3461 2.6465 23 1 -0.3634 -1.0276 -0.0005 24 1 -0.3633 0.5139 0.8899 25 1 -0.3633 0.5138 -0.8901 26 1 0.7173 1.1669 -3.4844 27 1 1.9897 -2.7761 0.5803 28 1 2.9811 -4.4179 2.9124 29 1 3.7771 -4.2524 5.2167 30 1 3.3335 -0.0070 5.1221 31 1 1.3557 1.6117 3.0471 32 1 3.1073 1.6215 3.3637 33 1 2.5002 1.8791 1.7103 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259736638.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:20:24 Heat of formation + Delta-G solvation = -8.175980 kcal Electronic energy + Delta-G solvation = -17368.625627 eV Core-core repulsion = 14501.412254 eV Total energy + Delta-G solvation = -2867.213373 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 247.107 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -49.80884 -42.25734 -38.08997 -36.01724 -33.69378 -32.60273 -31.32632 -28.76907 -27.35682 -26.89750 -24.38396 -22.73633 -22.36941 -20.50784 -18.38161 -18.16303 -17.65320 -16.99513 -16.63218 -16.47475 -16.04693 -15.83527 -15.29341 -14.74529 -14.47646 -14.02053 -13.85696 -13.71402 -13.45229 -13.18842 -12.90986 -12.90620 -12.70847 -12.43381 -12.15066 -11.91306 -11.74104 -11.60030 -10.98530 -10.54483 -10.45167 -8.98285 -8.45840 -8.12316 -6.24512 0.08052 0.55392 1.45923 1.46297 1.53768 1.86897 1.91479 2.45948 2.83716 3.17942 3.37140 3.73083 3.95077 3.99568 4.16972 4.28257 4.39131 4.52834 4.55801 4.63086 4.79006 4.92824 5.02371 5.10833 5.16889 5.19430 5.23393 5.48878 5.51016 5.70379 5.88501 5.94497 6.06401 6.19190 6.43731 6.50813 6.81847 7.43622 8.93197 Molecular weight = 247.11amu Principal moments of inertia in cm(-1) A = 0.036342 B = 0.005753 C = 0.005243 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 770.267850 B = 4865.537489 C = 5339.367888 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C 0.099 3.901 3 H 0.017 0.983 4 C -0.524 4.524 5 H 0.059 0.941 6 C 0.019 3.981 7 N -0.915 5.915 8 Si 0.955 3.045 9 H -0.270 1.270 10 H -0.284 1.284 11 H -0.275 1.275 12 C 0.112 3.888 13 C -0.222 4.222 14 C -0.134 4.134 15 C -0.046 4.046 16 C -0.178 4.178 17 C 0.098 3.902 18 F -0.143 7.143 19 C -0.166 4.166 20 C 0.096 3.904 21 N -0.489 5.489 22 C 0.072 3.928 23 H 0.030 0.970 24 H 0.024 0.976 25 H 0.067 0.933 26 H 0.263 0.737 27 H 0.139 0.861 28 H 0.152 0.848 29 H 0.159 0.841 30 H 0.144 0.856 31 H 0.079 0.921 32 H 0.101 0.899 33 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.230 -3.445 12.132 13.019 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.080 3.920 3 H 0.035 0.965 4 C -0.562 4.562 5 H 0.077 0.923 6 C -0.180 4.180 7 N -0.555 5.555 8 Si 0.781 3.219 9 H -0.195 1.195 10 H -0.209 1.209 11 H -0.200 1.200 12 C 0.006 3.994 13 C -0.245 4.245 14 C -0.139 4.139 15 C -0.065 4.065 16 C -0.198 4.198 17 C 0.078 3.922 18 F -0.122 7.122 19 C -0.188 4.188 20 C -0.011 4.011 21 N -0.172 5.172 22 C -0.068 4.068 23 H 0.049 0.951 24 H 0.043 0.957 25 H 0.086 0.914 26 H 0.072 0.928 27 H 0.157 0.843 28 H 0.169 0.831 29 H 0.177 0.823 30 H 0.162 0.838 31 H 0.097 0.903 32 H 0.119 0.881 33 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 3.136 -2.951 12.071 12.816 hybrid contribution 0.204 0.019 -0.875 0.899 sum 3.341 -2.932 11.195 12.046 Atomic orbital electron populations 1.21588 0.96554 0.99447 0.99998 1.17418 0.93194 0.94146 0.87235 0.96538 1.21333 1.31550 1.12722 0.90600 0.92266 1.25637 0.95135 0.95620 1.01626 1.69970 1.37383 1.23810 1.24288 0.85645 0.78646 0.78911 0.78687 1.19505 1.20924 1.20001 1.21197 0.97830 0.93144 0.87251 1.21463 1.12150 0.94846 0.96061 1.19637 1.05770 0.93485 0.95040 1.20349 0.95621 0.97421 0.93060 1.20771 1.06246 0.96801 0.95969 1.17217 1.01348 0.94222 0.79448 1.91457 1.87266 1.97258 1.36207 1.19846 1.07509 0.99146 0.92283 1.18068 1.02313 0.88982 0.91727 1.44101 1.55826 1.07045 1.10269 1.22107 1.04056 0.76932 1.03748 0.95120 0.95657 0.91425 0.92763 0.84298 0.83081 0.82332 0.83781 0.90267 0.88094 0.90313 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.53 8.95 71.98 0.64 -4.88 16 2 C 0.10 4.82 2.45 -12.28 -0.03 4.79 16 3 H 0.02 0.86 6.78 -2.39 -0.02 0.84 16 4 C -0.52 -27.73 8.20 25.60 0.21 -27.52 16 5 H 0.06 3.13 6.77 -2.91 -0.02 3.11 16 6 C 0.02 1.01 5.31 84.65 0.45 1.46 16 7 N -0.92 -50.29 11.33 21.45 0.24 -50.04 16 8 Si 0.96 42.23 29.54 68.60 2.03 44.25 16 9 H -0.27 -11.63 7.11 99.48 0.71 -10.92 16 10 H -0.28 -12.30 7.11 99.48 0.71 -11.59 16 11 H -0.27 -11.97 7.11 99.48 0.71 -11.27 16 12 C 0.11 4.87 5.77 40.85 0.24 5.10 16 13 C -0.22 -9.24 9.90 23.51 0.23 -9.01 16 14 C -0.13 -4.87 6.37 -20.19 -0.13 -4.99 16 15 C -0.05 -1.33 10.05 22.23 0.22 -1.10 16 16 C -0.18 -4.54 9.95 22.08 0.22 -4.32 16 17 C 0.10 2.72 7.28 22.39 0.16 2.88 16 18 F -0.14 -3.79 17.25 44.97 0.78 -3.01 16 19 C -0.17 -4.89 9.93 22.41 0.22 -4.66 16 20 C 0.10 3.38 6.81 39.03 0.27 3.64 16 21 N -0.49 -18.13 3.18 -524.66 -1.67 -19.80 16 22 C 0.07 2.08 10.80 127.77 1.38 3.46 16 23 H 0.03 1.40 8.14 -2.39 -0.02 1.38 16 24 H 0.02 1.04 8.14 -2.39 -0.02 1.02 16 25 H 0.07 3.47 6.08 -2.38 -0.01 3.46 16 26 H 0.26 13.82 8.31 -92.71 -0.77 13.05 16 27 H 0.14 5.82 7.58 -2.91 -0.02 5.80 16 28 H 0.15 3.52 8.06 -2.91 -0.02 3.50 16 29 H 0.16 3.02 8.06 -2.91 -0.02 3.00 16 30 H 0.14 3.54 8.06 -2.91 -0.02 3.51 16 31 H 0.08 2.03 8.14 -2.39 -0.02 2.01 16 32 H 0.10 2.27 8.10 -2.39 -0.02 2.25 16 33 H 0.08 2.43 6.81 -2.39 -0.02 2.41 16 Total: -1.00 -58.80 283.43 6.58 -52.22 By element: Atomic # 1 Polarization: 10.44 SS G_CDS: 1.11 Total: 11.55 kcal Atomic # 6 Polarization: -39.26 SS G_CDS: 4.09 Total: -35.17 kcal Atomic # 7 Polarization: -68.42 SS G_CDS: -1.43 Total: -69.84 kcal Atomic # 9 Polarization: -3.79 SS G_CDS: 0.78 Total: -3.01 kcal Atomic # 14 Polarization: 42.23 SS G_CDS: 2.03 Total: 44.25 kcal Total: -58.80 6.58 -52.22 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259736638.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.043 kcal (2) G-P(sol) polarization free energy of solvation -58.797 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.754 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.578 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.219 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.176 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds