Wall clock time and date at job start Mon Mar 30 2020 06:20:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08998 * 109.47136 * 2 1 4 4 C 1.50697 * 109.47005 * 120.00300 * 2 1 3 5 5 H 1.07998 * 119.99721 * 114.37853 * 4 2 1 6 6 C 1.37875 * 120.00157 * 294.37594 * 4 2 1 7 7 N 1.31516 * 119.99869 * 157.25458 * 6 4 2 8 8 Si 1.86799 * 120.00196 * 337.25759 * 6 4 2 9 9 H 1.48497 * 109.47444 * 179.97438 * 8 6 4 10 10 H 1.48495 * 109.47125 * 59.99541 * 8 6 4 11 11 H 1.48503 * 109.46825 * 299.99808 * 8 6 4 12 12 C 1.50703 * 109.46972 * 240.00420 * 2 1 3 13 13 C 1.34204 * 125.03808 * 275.02476 * 12 2 1 14 14 C 1.46523 * 107.00287 * 179.97438 * 13 12 2 15 15 C 1.39633 * 133.98776 * 180.02562 * 14 13 12 16 16 C 1.36617 * 119.79731 * 179.97438 * 15 14 13 17 17 C 1.39028 * 120.50273 * 0.02562 * 16 15 14 18 18 F 1.35096 * 119.69638 * 179.97438 * 17 16 15 19 19 C 1.37950 * 120.61069 * 359.97438 * 17 16 15 20 20 C 1.39120 * 119.76134 * 0.02562 * 19 17 16 21 21 N 1.36903 * 125.03887 * 94.71881 * 12 2 1 22 22 C 1.46498 * 125.06368 * 359.97438 * 21 12 2 23 23 H 1.09003 * 109.46825 * 53.20154 * 1 2 3 24 24 H 1.08999 * 109.47188 * 173.20256 * 1 2 3 25 25 H 1.09004 * 109.46702 * 293.20710 * 1 2 3 26 26 H 0.96996 * 120.00242 * 354.92728 * 7 6 4 27 27 H 1.08007 * 126.49935 * 359.97438 * 13 12 2 28 28 H 1.07996 * 120.10336 * 359.97438 * 15 14 13 29 29 H 1.07996 * 119.74850 * 179.97438 * 16 15 14 30 30 H 1.08004 * 120.11823 * 179.97438 * 19 17 16 31 31 H 1.09000 * 109.47443 * 89.99898 * 22 21 12 32 32 H 1.09003 * 109.46720 * 209.99667 * 22 21 12 33 33 H 1.08998 * 109.47280 * 329.99125 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 1.2304 5 1 2.5763 -1.6384 1.1338 6 6 1.7975 -0.1758 2.4794 7 7 1.8149 -0.9521 3.5409 8 14 1.4545 1.6512 2.6639 9 1 1.2361 1.9716 4.0973 10 1 0.2404 2.0078 1.8869 11 1 2.6140 2.4264 2.1540 12 6 2.0323 -0.7103 -1.2305 13 6 2.1984 -2.0375 -1.3402 14 6 2.6997 -2.2963 -2.6925 15 6 3.0559 -3.4523 -3.3900 16 6 3.5003 -3.3580 -4.6784 17 6 3.6014 -2.1191 -5.3011 18 9 4.0434 -2.0447 -6.5756 19 6 3.2545 -0.9650 -4.6297 20 6 2.7997 -1.0399 -3.3171 21 7 2.3813 -0.0980 -2.4042 22 6 2.3214 1.3449 -2.6509 23 1 -0.3633 0.6156 -0.8229 24 1 -0.3633 -1.0204 -0.1216 25 1 -0.3633 0.4050 0.9446 26 1 1.9196 -1.9109 3.4388 27 1 2.0002 -2.7751 -0.5765 28 1 2.9803 -4.4180 -2.9125 29 1 3.7760 -4.2525 -5.2170 30 1 3.3365 -0.0067 -5.1210 31 1 3.2720 1.8006 -2.3740 32 1 2.1265 1.5249 -3.7082 33 1 1.5211 1.7826 -2.0543 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259736642.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:20:28 Heat of formation + Delta-G solvation = 4.663470 kcal Electronic energy + Delta-G solvation = -17421.731482 eV Core-core repulsion = 14555.074870 eV Total energy + Delta-G solvation = -2866.656612 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 247.107 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -48.66811 -40.97911 -36.84870 -34.31206 -32.32475 -31.33273 -30.17598 -27.59023 -25.91444 -24.78558 -22.88407 -21.42439 -20.92250 -18.96287 -17.36745 -17.16040 -16.25106 -15.88088 -15.47748 -14.88065 -14.73749 -14.20963 -13.83125 -13.32099 -13.08290 -12.75442 -12.62077 -12.54867 -12.09590 -12.03786 -11.63272 -11.47123 -10.96132 -10.68443 -10.59041 -10.52218 -9.96123 -9.91869 -9.28339 -9.05450 -8.29367 -7.74543 -7.14790 -6.55417 -4.16002 1.29239 1.73441 3.13724 3.26321 3.30542 3.35057 3.52494 4.06569 4.41308 4.52887 4.86590 5.00310 5.11400 5.16225 5.35169 5.40161 5.47345 5.62508 5.72421 5.78787 6.14042 6.19254 6.31050 6.42454 6.45488 6.55472 6.56557 6.73366 6.86718 7.12258 7.17804 7.37783 7.58962 7.74428 8.05375 8.31227 8.81706 9.49138 10.81625 Molecular weight = 247.11amu Principal moments of inertia in cm(-1) A = 0.039664 B = 0.005947 C = 0.005435 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 705.757143 B = 4706.918625 C = 5150.673414 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.072 3.928 3 H 0.028 0.972 4 C -0.601 4.601 5 H 0.068 0.932 6 C 0.040 3.960 7 N -0.894 5.894 8 Si 1.033 2.967 9 H -0.283 1.283 10 H -0.277 1.277 11 H -0.284 1.284 12 C 0.138 3.862 13 C -0.201 4.201 14 C -0.110 4.110 15 C -0.046 4.046 16 C -0.186 4.186 17 C 0.097 3.903 18 F -0.148 7.148 19 C -0.164 4.164 20 C 0.110 3.890 21 N -0.487 5.487 22 C 0.078 3.922 23 H 0.021 0.979 24 H 0.050 0.950 25 H 0.058 0.942 26 H 0.272 0.728 27 H 0.148 0.852 28 H 0.128 0.872 29 H 0.128 0.872 30 H 0.124 0.876 31 H 0.067 0.933 32 H 0.074 0.926 33 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.439 1.282 -13.709 13.776 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.052 3.948 3 H 0.046 0.954 4 C -0.638 4.638 5 H 0.086 0.914 6 C -0.167 4.167 7 N -0.526 5.526 8 Si 0.861 3.139 9 H -0.209 1.209 10 H -0.203 1.203 11 H -0.210 1.210 12 C 0.033 3.967 13 C -0.224 4.224 14 C -0.116 4.116 15 C -0.064 4.064 16 C -0.206 4.206 17 C 0.077 3.923 18 F -0.126 7.126 19 C -0.185 4.185 20 C 0.002 3.998 21 N -0.171 5.171 22 C -0.064 4.064 23 H 0.040 0.960 24 H 0.069 0.931 25 H 0.077 0.923 26 H 0.082 0.918 27 H 0.166 0.834 28 H 0.146 0.854 29 H 0.146 0.854 30 H 0.142 0.858 31 H 0.086 0.914 32 H 0.093 0.907 33 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 0.156 2.820 -12.627 12.939 hybrid contribution 0.464 -1.067 -1.433 1.846 sum 0.620 1.753 -14.060 14.183 Atomic orbital electron populations 1.22156 0.97301 1.00559 0.99664 1.17906 0.92459 0.95213 0.89172 0.95449 1.21866 1.41036 1.11061 0.89881 0.91412 1.25662 0.93394 1.05613 0.91999 1.70836 1.43386 1.06610 1.31771 0.84193 0.77082 0.76207 0.76431 1.20875 1.20273 1.21024 1.21160 0.96712 0.92659 0.86158 1.21421 1.11179 0.95068 0.94771 1.19441 1.04549 0.91943 0.95617 1.20077 0.96260 0.97343 0.92738 1.20449 1.07768 0.95975 0.96447 1.17048 1.01999 0.93905 0.79341 1.91439 1.87433 1.97254 1.36519 1.19655 1.08028 0.97813 0.93051 1.17796 1.01793 0.89148 0.91030 1.44005 1.56237 1.05785 1.11042 1.21885 1.03376 0.78807 1.02367 0.96024 0.93098 0.92305 0.91842 0.83428 0.85365 0.85415 0.85784 0.91437 0.90703 0.89621 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.87 8.90 37.16 0.33 -2.54 16 2 C 0.07 1.62 1.83 -92.92 -0.17 1.45 16 3 H 0.03 0.60 5.93 -51.93 -0.31 0.30 16 4 C -0.60 -15.85 8.48 -34.44 -0.29 -16.15 16 5 H 0.07 1.93 6.85 -52.49 -0.36 1.57 16 6 C 0.04 1.09 5.20 -17.82 -0.09 1.00 16 7 N -0.89 -26.09 13.70 55.43 0.76 -25.33 16 8 Si 1.03 23.57 26.43 -169.99 -4.49 19.07 16 9 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 10 H -0.28 -5.76 6.12 56.52 0.35 -5.42 16 11 H -0.28 -6.21 7.11 56.52 0.40 -5.80 16 12 C 0.14 2.89 5.77 -81.75 -0.47 2.42 16 13 C -0.20 -4.16 9.92 -37.67 -0.37 -4.53 16 14 C -0.11 -2.04 6.37 -105.12 -0.67 -2.71 16 15 C -0.05 -0.71 10.05 -39.65 -0.40 -1.11 16 16 C -0.19 -2.68 9.95 -39.87 -0.40 -3.07 16 17 C 0.10 1.48 7.28 -39.39 -0.29 1.19 16 18 F -0.15 -2.17 17.25 2.25 0.04 -2.13 16 19 C -0.16 -2.55 9.94 -39.36 -0.39 -2.94 16 20 C 0.11 1.95 6.81 -83.99 -0.57 1.38 16 21 N -0.49 -8.82 3.18 -117.19 -0.37 -9.19 16 22 C 0.08 1.07 10.57 59.85 0.63 1.70 16 23 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 24 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 25 H 0.06 1.26 5.43 -51.93 -0.28 0.98 16 26 H 0.27 7.90 8.73 -40.82 -0.36 7.54 16 27 H 0.15 3.11 7.47 -52.48 -0.39 2.71 16 28 H 0.13 1.69 8.06 -52.49 -0.42 1.26 16 29 H 0.13 1.50 8.06 -52.49 -0.42 1.08 16 30 H 0.12 1.65 8.06 -52.48 -0.42 1.23 16 31 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 32 H 0.07 0.83 8.10 -51.93 -0.42 0.41 16 33 H 0.09 1.13 7.41 -51.93 -0.38 0.75 16 LS Contribution 280.46 15.07 4.23 4.23 Total: -1.00 -28.93 280.46 -6.88 -35.81 By element: Atomic # 1 Polarization: 5.35 SS G_CDS: -3.89 Total: 1.46 kcal Atomic # 6 Polarization: -20.77 SS G_CDS: -3.15 Total: -23.92 kcal Atomic # 7 Polarization: -34.91 SS G_CDS: 0.39 Total: -34.52 kcal Atomic # 9 Polarization: -2.17 SS G_CDS: 0.04 Total: -2.13 kcal Atomic # 14 Polarization: 23.57 SS G_CDS: -4.49 Total: 19.07 kcal Total LS contribution 4.23 Total: 4.23 kcal Total: -28.93 -6.88 -35.81 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259736642.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.473 kcal (2) G-P(sol) polarization free energy of solvation -28.925 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.547 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.884 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.809 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.663 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds