Wall clock time and date at job start Mon Mar 30 2020 06:20:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08999 * 109.47586 * 2 1 4 4 C 1.50708 * 109.47162 * 239.99974 * 2 1 3 5 5 H 1.07999 * 119.99896 * 275.02197 * 4 2 1 6 6 C 1.37878 * 119.99816 * 95.01964 * 4 2 1 7 7 N 1.31513 * 119.99936 * 184.91856 * 6 4 2 8 8 Si 1.86805 * 120.00000 * 4.91358 * 6 4 2 9 9 H 1.48494 * 109.46944 * 84.83792 * 8 6 4 10 10 H 1.48494 * 109.46929 * 204.83315 * 8 6 4 11 11 H 1.48500 * 109.47241 * 324.83831 * 8 6 4 12 12 C 1.50704 * 109.47009 * 120.00629 * 2 1 3 13 13 C 1.34208 * 126.50986 * 59.95082 * 12 2 1 14 14 N 1.36884 * 109.91344 * 180.02562 * 13 12 2 15 15 C 1.46496 * 125.06405 * 179.97438 * 14 13 12 16 16 C 1.37696 * 109.87069 * 0.02562 * 14 13 12 17 17 C 1.39167 * 133.40457 * 180.02562 * 16 14 13 18 18 C 1.37703 * 119.96603 * 180.02562 * 17 16 14 19 19 C 1.38837 * 120.69452 * 0.02562 * 18 17 16 20 20 C 1.37824 * 120.35152 * 359.97387 * 19 18 17 21 21 F 1.35101 * 120.19385 * 180.02562 * 20 19 18 22 22 C 1.39825 * 119.61126 * 0.02562 * 20 19 18 23 23 H 1.08997 * 109.47282 * 175.00565 * 1 2 3 24 24 H 1.08999 * 109.47031 * 295.00955 * 1 2 3 25 25 H 1.09008 * 109.46565 * 55.00604 * 1 2 3 26 26 H 0.96995 * 120.00209 * 179.97438 * 7 6 4 27 27 H 1.08007 * 125.04278 * 0.02562 * 13 12 2 28 28 H 1.09001 * 109.47472 * 89.97567 * 15 14 13 29 29 H 1.08996 * 109.47135 * 209.97592 * 15 14 13 30 30 H 1.09002 * 109.46963 * 329.97482 * 15 14 13 31 31 H 1.08000 * 120.01606 * 0.04348 * 17 16 14 32 32 H 1.08002 * 119.65192 * 180.28102 * 18 17 16 33 33 H 1.07995 * 119.82462 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7104 -1.2305 5 1 2.1352 -1.7855 -1.2292 6 6 2.3607 0.0121 -2.3580 7 7 2.7063 -0.6131 -3.4621 8 14 2.3144 1.8792 -2.3171 9 1 3.6000 2.3945 -1.7817 10 1 2.1069 2.3993 -3.6924 11 1 1.1995 2.3277 -1.4447 12 6 2.0323 -0.7106 1.2304 13 6 1.7892 -1.9857 1.5713 14 7 2.4106 -2.2783 2.7554 15 6 2.3640 -3.5769 3.4318 16 6 3.0850 -1.1699 3.2165 17 6 3.8628 -0.9242 4.3440 18 6 4.4204 0.3199 4.5372 19 6 4.2155 1.3390 3.6170 20 6 3.4489 1.1187 2.4930 21 9 3.2520 2.1126 1.5993 22 6 2.8761 -0.1394 2.2831 23 1 -0.3634 -1.0237 -0.0895 24 1 -0.3633 0.4345 0.9313 25 1 -0.3633 0.5894 -0.8420 26 1 2.9369 -0.1048 -4.2554 27 1 1.1919 -2.6781 0.9966 28 1 3.1909 -4.1969 3.0856 29 1 2.4469 -3.4289 4.5085 30 1 1.4193 -4.0712 3.2047 31 1 4.0292 -1.7091 5.0670 32 1 5.0269 0.5036 5.4118 33 1 4.6592 2.3096 3.7827 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259739562.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:20:36 Heat of formation + Delta-G solvation = 9.155151 kcal Electronic energy + Delta-G solvation = -17822.124385 eV Core-core repulsion = 14955.662547 eV Total energy + Delta-G solvation = -2866.461838 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 247.107 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -48.29439 -40.83778 -36.58428 -34.69910 -32.16028 -30.68112 -29.66658 -28.19088 -25.76315 -25.03662 -22.38861 -21.66778 -21.02963 -18.71409 -17.03733 -16.58980 -16.20080 -15.54962 -15.30038 -14.92419 -14.65320 -14.35964 -14.11505 -13.13108 -12.65614 -12.55155 -12.46835 -12.42647 -12.19262 -12.01165 -11.49820 -11.23591 -10.99416 -10.84851 -10.61279 -10.47321 -9.76577 -9.65575 -9.07334 -8.74918 -8.44780 -7.87612 -6.90916 -6.01318 -3.99233 1.37702 1.82079 3.15022 3.32386 3.40855 3.46247 3.52001 4.10388 4.51401 4.73451 4.91008 4.96954 5.22431 5.26635 5.34312 5.36618 5.46931 5.50412 5.71986 5.94882 6.15658 6.30364 6.43191 6.48074 6.61889 6.69119 6.72986 6.89020 7.11663 7.22194 7.32382 7.51466 7.65693 7.82464 7.83886 8.58394 9.02075 9.62350 11.11699 Molecular weight = 247.11amu Principal moments of inertia in cm(-1) A = 0.022795 B = 0.009191 C = 0.007338 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1228.065193 B = 3045.875793 C = 3814.735184 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.064 3.936 3 H 0.044 0.956 4 C -0.501 4.501 5 H 0.073 0.927 6 C 0.072 3.928 7 N -0.902 5.902 8 Si 0.871 3.129 9 H -0.273 1.273 10 H -0.291 1.291 11 H -0.263 1.263 12 C -0.091 4.091 13 C 0.029 3.971 14 N -0.490 5.490 15 C 0.085 3.915 16 C 0.121 3.879 17 C -0.148 4.148 18 C -0.081 4.081 19 C -0.201 4.201 20 C 0.156 3.844 21 F -0.135 7.135 22 C -0.145 4.145 23 H 0.045 0.955 24 H 0.023 0.977 25 H 0.044 0.956 26 H 0.263 0.737 27 H 0.168 0.832 28 H 0.065 0.935 29 H 0.074 0.926 30 H 0.080 0.920 31 H 0.117 0.883 32 H 0.127 0.873 33 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.303 -1.824 16.142 16.248 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.045 3.955 3 H 0.063 0.937 4 C -0.538 4.538 5 H 0.091 0.909 6 C -0.129 4.129 7 N -0.540 5.540 8 Si 0.699 3.301 9 H -0.199 1.199 10 H -0.217 1.217 11 H -0.187 1.187 12 C -0.097 4.097 13 C -0.092 4.092 14 N -0.174 5.174 15 C -0.057 4.057 16 C 0.013 3.987 17 C -0.169 4.169 18 C -0.100 4.100 19 C -0.222 4.222 20 C 0.136 3.864 21 F -0.113 7.113 22 C -0.151 4.151 23 H 0.064 0.936 24 H 0.042 0.958 25 H 0.063 0.937 26 H 0.073 0.927 27 H 0.185 0.815 28 H 0.083 0.917 29 H 0.093 0.907 30 H 0.099 0.901 31 H 0.135 0.865 32 H 0.145 0.855 33 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 0.291 -2.115 16.009 16.151 hybrid contribution 0.129 1.003 -0.316 1.060 sum 0.420 -1.112 15.693 15.738 Atomic orbital electron populations 1.21968 0.98214 1.00287 0.98401 1.17823 0.92038 0.95867 0.89820 0.93744 1.20944 1.43389 0.95192 0.94307 0.90861 1.25009 0.94476 0.98186 0.95276 1.69895 1.46724 1.35751 1.01679 0.86932 0.79680 0.86703 0.76828 1.19864 1.21703 1.18728 1.20848 0.99541 0.93422 0.95861 1.21518 1.02477 0.97418 0.87772 1.43751 1.44041 1.09293 1.20325 1.21824 1.03127 0.83224 0.97550 1.17938 0.98009 0.86854 0.95895 1.19880 1.02126 0.98058 0.96830 1.20422 0.99316 0.91683 0.98577 1.20701 1.04782 1.01091 0.95598 1.17178 0.97447 0.83839 0.87913 1.91482 1.93296 1.59687 1.66846 1.19257 1.04814 0.92681 0.98329 0.93625 0.95841 0.93664 0.92731 0.81513 0.91672 0.90697 0.90121 0.86468 0.85476 0.85379 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.87 9.02 37.16 0.34 -2.54 16 2 C 0.06 1.58 2.36 -92.92 -0.22 1.37 16 3 H 0.04 1.16 4.00 -51.93 -0.21 0.95 16 4 C -0.50 -14.23 8.73 -34.44 -0.30 -14.53 16 5 H 0.07 2.21 7.94 -52.49 -0.42 1.80 16 6 C 0.07 2.12 5.47 -17.82 -0.10 2.02 16 7 N -0.90 -27.99 13.96 55.43 0.77 -27.22 16 8 Si 0.87 22.64 26.99 -169.99 -4.59 18.05 16 9 H -0.27 -7.13 7.11 56.52 0.40 -6.73 16 10 H -0.29 -7.41 7.11 56.52 0.40 -7.01 16 11 H -0.26 -6.57 6.82 56.52 0.39 -6.18 16 12 C -0.09 -2.02 5.04 -102.71 -0.52 -2.54 16 13 C 0.03 0.56 10.73 -16.72 -0.18 0.38 16 14 N -0.49 -7.97 3.18 -121.81 -0.39 -8.36 16 15 C 0.08 0.91 11.03 59.84 0.66 1.57 16 16 C 0.12 2.13 6.80 -84.00 -0.57 1.55 16 17 C -0.15 -2.10 9.95 -39.43 -0.39 -2.49 16 18 C -0.08 -1.09 10.01 -39.56 -0.40 -1.48 16 19 C -0.20 -3.17 10.01 -39.51 -0.40 -3.57 16 20 C 0.16 3.10 7.34 -39.14 -0.29 2.81 16 21 F -0.13 -2.93 16.02 2.25 0.04 -2.89 16 22 C -0.14 -3.01 6.33 -105.09 -0.67 -3.67 16 23 H 0.04 0.93 8.13 -51.93 -0.42 0.51 16 24 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 25 H 0.04 1.00 8.14 -51.92 -0.42 0.58 16 26 H 0.26 7.69 8.31 -40.82 -0.34 7.35 16 27 H 0.17 2.91 8.06 -52.48 -0.42 2.48 16 28 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 29 H 0.07 0.65 8.10 -51.93 -0.42 0.23 16 30 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 31 H 0.12 1.29 8.06 -52.49 -0.42 0.87 16 32 H 0.13 1.25 8.06 -52.49 -0.42 0.82 16 33 H 0.13 1.70 8.06 -52.49 -0.42 1.28 16 LS Contribution 285.26 15.07 4.30 4.30 Total: -1.00 -32.85 285.26 -6.89 -39.74 By element: Atomic # 1 Polarization: 1.50 SS G_CDS: -4.00 Total: -2.50 kcal Atomic # 6 Polarization: -18.10 SS G_CDS: -3.03 Total: -21.13 kcal Atomic # 7 Polarization: -35.96 SS G_CDS: 0.39 Total: -35.58 kcal Atomic # 9 Polarization: -2.93 SS G_CDS: 0.04 Total: -2.89 kcal Atomic # 14 Polarization: 22.64 SS G_CDS: -4.59 Total: 18.05 kcal Total LS contribution 4.30 Total: 4.30 kcal Total: -32.85 -6.89 -39.74 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259739562.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.899 kcal (2) G-P(sol) polarization free energy of solvation -32.849 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.049 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.894 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.744 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.155 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds