Wall clock time and date at job start Mon Mar 30 2020 06:20:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08996 * 109.47199 * 2 1 4 4 C 1.50694 * 109.47366 * 120.00837 * 2 1 3 5 5 H 1.08005 * 120.00088 * 114.47609 * 4 2 1 6 6 C 1.37872 * 120.00068 * 294.48237 * 4 2 1 7 7 N 1.31516 * 120.00439 * 164.54220 * 6 4 2 8 8 Si 1.86806 * 119.99863 * 344.81317 * 6 4 2 9 9 H 1.48493 * 109.47376 * 269.72570 * 8 6 4 10 10 H 1.48497 * 109.46689 * 29.72888 * 8 6 4 11 11 H 1.48505 * 109.47003 * 149.72486 * 8 6 4 12 12 C 1.50706 * 109.46649 * 240.00894 * 2 1 3 13 13 C 1.34213 * 126.50237 * 299.68512 * 12 2 1 14 14 N 1.36891 * 109.91049 * 179.83509 * 13 12 2 15 15 C 1.46497 * 125.06496 * 180.18153 * 14 13 12 16 16 C 1.37696 * 109.86733 * 0.44896 * 14 13 12 17 17 C 1.39170 * 133.39832 * 179.71899 * 16 14 13 18 18 C 1.37718 * 119.95905 * 180.02562 * 17 16 14 19 19 C 1.38829 * 120.69346 * 0.02562 * 18 17 16 20 20 C 1.37829 * 120.35616 * 359.95946 * 19 18 17 21 21 F 1.35103 * 120.19337 * 180.02562 * 20 19 18 22 22 C 1.39822 * 119.60681 * 0.03970 * 20 19 18 23 23 H 1.09001 * 109.46755 * 293.70295 * 1 2 3 24 24 H 1.09004 * 109.47357 * 53.70109 * 1 2 3 25 25 H 1.09000 * 109.47710 * 173.70575 * 1 2 3 26 26 H 0.97002 * 119.99478 * 355.18640 * 7 6 4 27 27 H 1.08003 * 125.04761 * 359.96676 * 13 12 2 28 28 H 1.08999 * 109.47460 * 270.30176 * 15 14 13 29 29 H 1.09006 * 109.47360 * 30.30175 * 15 14 13 30 30 H 1.09000 * 109.47236 * 150.30050 * 15 14 13 31 31 H 1.07997 * 120.02046 * 359.97438 * 17 16 14 32 32 H 1.07995 * 119.64580 * 179.97438 * 18 17 16 33 33 H 1.08000 * 119.82351 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7105 1.2303 5 1 2.5778 -1.6378 1.1336 6 6 1.7957 -0.1771 2.4794 7 7 1.9537 -0.9205 3.5527 8 14 1.2432 1.5995 2.6469 9 1 2.4334 2.4779 2.7769 10 1 0.4673 1.9921 1.4432 11 1 0.3896 1.7407 3.8539 12 6 2.0322 -0.7103 -1.2307 13 6 1.7946 -1.9873 -1.5683 14 7 2.4112 -2.2782 -2.7553 15 6 2.3658 -3.5771 -3.4313 16 6 3.0856 -1.1696 -3.2163 17 6 3.8633 -0.9239 -4.3439 18 6 4.4218 0.3201 -4.5364 19 6 4.2186 1.3384 -3.6150 20 6 3.4517 1.1180 -2.4911 21 9 3.2557 2.1115 -1.5968 22 6 2.8782 -0.1399 -2.2820 23 1 -0.3633 0.4131 0.9410 24 1 -0.3634 0.6084 -0.8283 25 1 -0.3634 -1.0214 -0.1127 26 1 2.1686 -1.8622 3.4631 27 1 1.2027 -2.6818 -0.9905 28 1 3.1936 -4.1960 -3.0852 29 1 1.4218 -4.0724 -3.2035 30 1 2.4480 -3.4294 -4.5081 31 1 4.0295 -1.7086 -5.0671 32 1 5.0248 0.5051 -5.4131 33 1 4.6635 2.3086 -3.7797 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259739564.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:20:39 Heat of formation + Delta-G solvation = 9.462034 kcal Electronic energy + Delta-G solvation = -17777.078324 eV Core-core repulsion = 14910.629793 eV Total energy + Delta-G solvation = -2866.448531 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 247.107 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -48.30398 -40.87552 -36.61788 -34.79045 -32.25159 -30.59340 -29.69640 -28.22189 -25.82496 -24.53608 -22.40417 -21.68573 -21.02371 -18.72381 -17.41910 -16.55428 -16.35294 -15.62759 -15.33568 -14.92496 -14.68080 -14.36871 -13.92039 -13.17310 -12.76795 -12.61288 -12.59910 -12.47597 -12.13876 -11.88324 -11.49167 -11.26185 -11.00502 -10.74583 -10.50331 -10.25026 -9.77832 -9.45639 -9.01098 -8.67013 -8.19468 -7.91359 -7.01405 -6.31114 -3.97377 1.34484 1.78728 3.11403 3.29098 3.51494 3.53867 3.69331 4.07229 4.59752 4.70459 4.87388 4.93699 5.19276 5.22956 5.31856 5.35512 5.46064 5.47403 5.68271 5.91833 6.14787 6.29218 6.40497 6.50078 6.59204 6.67538 6.73703 6.87553 7.10793 7.23779 7.30526 7.51175 7.66899 7.82013 8.22739 8.46525 8.98904 9.69326 11.02676 Molecular weight = 247.11amu Principal moments of inertia in cm(-1) A = 0.024262 B = 0.008556 C = 0.006919 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1153.797112 B = 3271.903588 C = 4045.759248 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.071 3.929 3 H 0.035 0.965 4 C -0.585 4.585 5 H 0.055 0.945 6 C 0.032 3.968 7 N -0.911 5.911 8 Si 1.039 2.961 9 H -0.286 1.286 10 H -0.269 1.269 11 H -0.288 1.288 12 C -0.089 4.089 13 C 0.029 3.971 14 N -0.491 5.491 15 C 0.085 3.915 16 C 0.120 3.880 17 C -0.149 4.149 18 C -0.080 4.080 19 C -0.201 4.201 20 C 0.158 3.842 21 F -0.133 7.133 22 C -0.146 4.146 23 H 0.049 0.951 24 H 0.022 0.978 25 H 0.040 0.960 26 H 0.266 0.734 27 H 0.167 0.833 28 H 0.064 0.936 29 H 0.080 0.920 30 H 0.075 0.925 31 H 0.117 0.883 32 H 0.128 0.872 33 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.352 -1.378 -16.641 16.753 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.051 3.949 3 H 0.054 0.946 4 C -0.623 4.623 5 H 0.074 0.926 6 C -0.172 4.172 7 N -0.546 5.546 8 Si 0.867 3.133 9 H -0.213 1.213 10 H -0.194 1.194 11 H -0.214 1.214 12 C -0.094 4.094 13 C -0.093 4.093 14 N -0.175 5.175 15 C -0.057 4.057 16 C 0.012 3.988 17 C -0.170 4.170 18 C -0.099 4.099 19 C -0.222 4.222 20 C 0.138 3.862 21 F -0.111 7.111 22 C -0.152 4.152 23 H 0.068 0.932 24 H 0.041 0.959 25 H 0.059 0.941 26 H 0.076 0.924 27 H 0.184 0.816 28 H 0.083 0.917 29 H 0.099 0.901 30 H 0.094 0.906 31 H 0.135 0.865 32 H 0.146 0.854 33 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 0.917 -0.524 -15.594 15.629 hybrid contribution 0.470 -1.258 -0.925 1.631 sum 1.387 -1.782 -16.519 16.672 Atomic orbital electron populations 1.22155 0.98381 0.99465 0.99210 1.17722 0.91617 0.95778 0.89760 0.94649 1.21985 1.39426 1.10320 0.90597 0.92629 1.25724 0.94302 1.05198 0.91995 1.70825 1.44887 1.08089 1.30777 0.84178 0.77329 0.75926 0.75875 1.21283 1.19384 1.21407 1.20763 0.99429 0.93199 0.96053 1.21544 1.02582 0.97496 0.87642 1.43762 1.44237 1.09322 1.20176 1.21824 1.03095 0.83202 0.97606 1.17956 0.97984 0.86891 0.95938 1.19888 1.02144 0.98111 0.96839 1.20431 0.99288 0.91668 0.98562 1.20710 1.04798 1.01103 0.95573 1.17162 0.97320 0.83812 0.87893 1.91487 1.93277 1.59603 1.66746 1.19275 1.04788 0.92769 0.98348 0.93161 0.95868 0.94082 0.92411 0.81578 0.91742 0.90125 0.90625 0.86481 0.85448 0.85306 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.05 8.42 37.16 0.31 -2.74 16 2 C 0.07 1.77 2.24 -92.92 -0.21 1.57 16 3 H 0.04 0.93 5.48 -51.93 -0.28 0.64 16 4 C -0.59 -16.74 8.70 -34.45 -0.30 -17.03 16 5 H 0.06 1.71 7.91 -52.48 -0.42 1.29 16 6 C 0.03 0.94 5.33 -17.82 -0.09 0.84 16 7 N -0.91 -28.38 13.70 55.43 0.76 -27.63 16 8 Si 1.04 26.08 26.17 -169.99 -4.45 21.64 16 9 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 10 H -0.27 -6.24 5.53 56.52 0.31 -5.92 16 11 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 12 C -0.09 -2.00 5.00 -102.71 -0.51 -2.51 16 13 C 0.03 0.56 10.55 -16.71 -0.18 0.38 16 14 N -0.49 -8.07 3.18 -121.80 -0.39 -8.46 16 15 C 0.08 0.92 11.02 59.85 0.66 1.58 16 16 C 0.12 2.11 6.80 -84.00 -0.57 1.54 16 17 C -0.15 -2.10 9.95 -39.43 -0.39 -2.49 16 18 C -0.08 -1.06 10.01 -39.55 -0.40 -1.46 16 19 C -0.20 -3.11 10.01 -39.51 -0.40 -3.50 16 20 C 0.16 3.08 7.34 -39.14 -0.29 2.79 16 21 F -0.13 -2.79 16.02 2.25 0.04 -2.76 16 22 C -0.15 -3.02 6.33 -105.09 -0.67 -3.68 16 23 H 0.05 1.16 5.06 -51.93 -0.26 0.90 16 24 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 25 H 0.04 0.87 7.85 -51.93 -0.41 0.46 16 26 H 0.27 8.22 8.73 -40.82 -0.36 7.87 16 27 H 0.17 3.03 8.06 -52.48 -0.42 2.61 16 28 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 29 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 30 H 0.07 0.66 8.10 -51.93 -0.42 0.24 16 31 H 0.12 1.28 8.06 -52.49 -0.42 0.86 16 32 H 0.13 1.22 8.06 -52.49 -0.42 0.80 16 33 H 0.13 1.66 8.06 -52.49 -0.42 1.24 16 LS Contribution 280.29 15.07 4.22 4.22 Total: -1.00 -32.72 280.29 -6.84 -39.56 By element: Atomic # 1 Polarization: 2.14 SS G_CDS: -3.99 Total: -1.85 kcal Atomic # 6 Polarization: -21.69 SS G_CDS: -3.03 Total: -24.72 kcal Atomic # 7 Polarization: -36.46 SS G_CDS: 0.37 Total: -36.09 kcal Atomic # 9 Polarization: -2.79 SS G_CDS: 0.04 Total: -2.76 kcal Atomic # 14 Polarization: 26.08 SS G_CDS: -4.45 Total: 21.64 kcal Total LS contribution 4.22 Total: 4.22 kcal Total: -32.72 -6.84 -39.56 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259739564.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.021 kcal (2) G-P(sol) polarization free energy of solvation -32.723 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.298 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.836 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.559 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.462 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds