Wall clock time and date at job start Mon Mar 30 2020 06:20:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08996 * 109.47199 * 2 1 4 4 C 1.50694 * 109.47366 * 120.00837 * 2 1 3 5 5 H 1.08005 * 120.00088 * 114.47609 * 4 2 1 6 6 C 1.37872 * 120.00068 * 294.48237 * 4 2 1 7 7 N 1.31516 * 120.00439 * 164.54220 * 6 4 2 8 8 Si 1.86806 * 119.99863 * 344.81317 * 6 4 2 9 9 H 1.48493 * 109.47376 * 269.72570 * 8 6 4 10 10 H 1.48497 * 109.46689 * 29.72888 * 8 6 4 11 11 H 1.48505 * 109.47003 * 149.72486 * 8 6 4 12 12 C 1.50706 * 109.46649 * 240.00894 * 2 1 3 13 13 C 1.34213 * 126.50237 * 299.68512 * 12 2 1 14 14 N 1.36891 * 109.91049 * 179.83509 * 13 12 2 15 15 C 1.46497 * 125.06496 * 180.18153 * 14 13 12 16 16 C 1.37696 * 109.86733 * 0.44896 * 14 13 12 17 17 C 1.39170 * 133.39832 * 179.71899 * 16 14 13 18 18 C 1.37718 * 119.95905 * 180.02562 * 17 16 14 19 19 C 1.38829 * 120.69346 * 0.02562 * 18 17 16 20 20 C 1.37829 * 120.35616 * 359.95946 * 19 18 17 21 21 F 1.35103 * 120.19337 * 180.02562 * 20 19 18 22 22 C 1.39822 * 119.60681 * 0.03970 * 20 19 18 23 23 H 1.09001 * 109.46755 * 293.70295 * 1 2 3 24 24 H 1.09004 * 109.47357 * 53.70109 * 1 2 3 25 25 H 1.09000 * 109.47710 * 173.70575 * 1 2 3 26 26 H 0.97002 * 119.99478 * 355.18640 * 7 6 4 27 27 H 1.08003 * 125.04761 * 359.96676 * 13 12 2 28 28 H 1.08999 * 109.47460 * 270.30176 * 15 14 13 29 29 H 1.09006 * 109.47360 * 30.30175 * 15 14 13 30 30 H 1.09000 * 109.47236 * 150.30050 * 15 14 13 31 31 H 1.07997 * 120.02046 * 359.97438 * 17 16 14 32 32 H 1.07995 * 119.64580 * 179.97438 * 18 17 16 33 33 H 1.08000 * 119.82351 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7105 1.2303 5 1 2.5778 -1.6378 1.1336 6 6 1.7957 -0.1771 2.4794 7 7 1.9537 -0.9205 3.5527 8 14 1.2432 1.5995 2.6469 9 1 2.4334 2.4779 2.7769 10 1 0.4673 1.9921 1.4432 11 1 0.3896 1.7407 3.8539 12 6 2.0322 -0.7103 -1.2307 13 6 1.7946 -1.9873 -1.5683 14 7 2.4112 -2.2782 -2.7553 15 6 2.3658 -3.5771 -3.4313 16 6 3.0856 -1.1696 -3.2163 17 6 3.8633 -0.9239 -4.3439 18 6 4.4218 0.3201 -4.5364 19 6 4.2186 1.3384 -3.6150 20 6 3.4517 1.1180 -2.4911 21 9 3.2557 2.1115 -1.5968 22 6 2.8782 -0.1399 -2.2820 23 1 -0.3633 0.4131 0.9410 24 1 -0.3634 0.6084 -0.8283 25 1 -0.3634 -1.0214 -0.1127 26 1 2.1686 -1.8622 3.4631 27 1 1.2027 -2.6818 -0.9905 28 1 3.1936 -4.1960 -3.0852 29 1 1.4218 -4.0724 -3.2035 30 1 2.4480 -3.4294 -4.5081 31 1 4.0295 -1.7086 -5.0671 32 1 5.0248 0.5051 -5.4131 33 1 4.6635 2.3086 -3.7797 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259739564.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:20:38 Heat of formation + Delta-G solvation = -10.145602 kcal Electronic energy + Delta-G solvation = -17777.928575 eV Core-core repulsion = 14910.629793 eV Total energy + Delta-G solvation = -2867.298782 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 247.107 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -49.75562 -42.18936 -37.85792 -36.60886 -34.09571 -32.24489 -30.88926 -29.52804 -27.10787 -26.58610 -23.80209 -23.15018 -22.44533 -20.33756 -19.48334 -17.96701 -17.72350 -16.92548 -16.68818 -16.22232 -15.94043 -15.78604 -15.60465 -15.07547 -14.58523 -14.11172 -13.92626 -13.60805 -13.53932 -13.34786 -13.08584 -12.75033 -12.46598 -12.42015 -11.99159 -11.93751 -11.67204 -11.36883 -10.99535 -10.46606 -10.24472 -9.19952 -8.77720 -8.26720 -6.31756 0.06328 0.56786 1.46443 1.50101 1.71302 1.80619 1.94239 2.48901 2.80234 3.08655 3.43695 3.79062 3.91079 3.99092 4.14738 4.27233 4.43661 4.48183 4.58427 4.68970 4.70713 4.75122 4.93999 4.95052 5.05144 5.21240 5.30488 5.37952 5.46439 5.64796 5.82317 5.92745 6.05728 6.09739 6.29073 6.48114 6.61769 7.42239 8.66950 Molecular weight = 247.11amu Principal moments of inertia in cm(-1) A = 0.024262 B = 0.008556 C = 0.006919 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1153.797112 B = 3271.903588 C = 4045.759248 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.073 3.927 3 H 0.019 0.981 4 C -0.580 4.580 5 H 0.019 0.981 6 C -0.018 4.018 7 N -0.942 5.942 8 Si 1.075 2.925 9 H -0.282 1.282 10 H -0.242 1.242 11 H -0.281 1.281 12 C -0.145 4.145 13 C 0.037 3.963 14 N -0.487 5.487 15 C 0.075 3.925 16 C 0.110 3.890 17 C -0.135 4.135 18 C -0.069 4.069 19 C -0.186 4.186 20 C 0.107 3.893 21 F -0.156 7.156 22 C -0.184 4.184 23 H 0.042 0.958 24 H 0.042 0.958 25 H 0.047 0.953 26 H 0.253 0.747 27 H 0.169 0.831 28 H 0.074 0.926 29 H 0.095 0.905 30 H 0.106 0.894 31 H 0.160 0.840 32 H 0.178 0.822 33 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.876 -1.388 -20.362 20.495 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.053 3.947 3 H 0.037 0.963 4 C -0.618 4.618 5 H 0.037 0.963 6 C -0.215 4.215 7 N -0.579 5.579 8 Si 0.897 3.103 9 H -0.208 1.208 10 H -0.166 1.166 11 H -0.206 1.206 12 C -0.151 4.151 13 C -0.086 4.086 14 N -0.170 5.170 15 C -0.064 4.064 16 C 0.002 3.998 17 C -0.156 4.156 18 C -0.088 4.088 19 C -0.206 4.206 20 C 0.088 3.912 21 F -0.134 7.134 22 C -0.190 4.190 23 H 0.061 0.939 24 H 0.061 0.939 25 H 0.066 0.934 26 H 0.061 0.939 27 H 0.186 0.814 28 H 0.093 0.907 29 H 0.114 0.886 30 H 0.124 0.876 31 H 0.178 0.822 32 H 0.195 0.805 33 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges 1.449 -0.563 -19.363 19.425 hybrid contribution 0.424 -1.370 0.067 1.435 sum 1.873 -1.933 -19.297 19.483 Atomic orbital electron populations 1.22035 0.96738 1.00336 0.99533 1.17532 0.92906 0.94598 0.89670 0.96301 1.22152 1.38065 1.08942 0.92608 0.96260 1.27002 0.94249 1.08356 0.91896 1.70939 1.47651 1.07595 1.31715 0.83731 0.77667 0.71747 0.77151 1.20829 1.16614 1.20645 1.20626 1.02791 0.94954 0.96751 1.21527 1.01923 0.96519 0.88672 1.43995 1.42965 1.10900 1.19117 1.22231 1.04480 0.80795 0.98941 1.18385 0.98655 0.86272 0.96533 1.20446 0.99760 0.99572 0.95799 1.21051 0.98325 0.90387 0.99053 1.21158 1.02540 1.02949 0.93990 1.17706 1.00299 0.83601 0.89635 1.91412 1.93814 1.60343 1.67879 1.19538 1.05804 0.94493 0.99141 0.93915 0.93881 0.93367 0.93862 0.81387 0.90697 0.88615 0.87572 0.82199 0.80450 0.82866 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.89 8.42 71.98 0.61 -5.28 16 2 C 0.07 3.75 2.24 -12.29 -0.03 3.72 16 3 H 0.02 1.02 5.48 -2.39 -0.01 1.01 16 4 C -0.58 -34.70 8.70 25.60 0.22 -34.48 16 5 H 0.02 1.25 7.91 -2.91 -0.02 1.23 16 6 C -0.02 -1.07 5.33 84.65 0.45 -0.62 16 7 N -0.94 -61.07 13.70 21.45 0.29 -60.77 16 8 Si 1.08 53.74 26.17 68.60 1.80 55.53 16 9 H -0.28 -13.80 7.11 99.48 0.71 -13.09 16 10 H -0.24 -10.99 5.53 99.48 0.55 -10.44 16 11 H -0.28 -13.62 7.11 99.48 0.71 -12.91 16 12 C -0.15 -6.70 5.00 -18.63 -0.09 -6.79 16 13 C 0.04 1.47 10.55 82.98 0.88 2.34 16 14 N -0.49 -15.12 3.18 -539.27 -1.72 -16.83 16 15 C 0.08 1.38 11.02 127.77 1.41 2.79 16 16 C 0.11 3.61 6.80 39.02 0.27 3.88 16 17 C -0.14 -3.17 9.95 22.37 0.22 -2.94 16 18 C -0.07 -1.48 10.01 22.29 0.22 -1.26 16 19 C -0.19 -5.24 10.01 22.31 0.22 -5.02 16 20 C 0.11 4.18 7.34 22.56 0.17 4.34 16 21 F -0.16 -6.79 16.02 44.97 0.72 -6.07 16 22 C -0.18 -7.66 6.33 -20.17 -0.13 -7.78 16 23 H 0.04 1.96 5.06 -2.39 -0.01 1.95 16 24 H 0.04 1.76 8.14 -2.38 -0.02 1.74 16 25 H 0.05 2.07 7.85 -2.39 -0.02 2.05 16 26 H 0.25 16.47 8.73 -92.71 -0.81 15.67 16 27 H 0.17 6.27 8.06 -2.91 -0.02 6.25 16 28 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 29 H 0.10 1.47 8.14 -2.38 -0.02 1.45 16 30 H 0.11 1.32 8.10 -2.39 -0.02 1.30 16 31 H 0.16 2.39 8.06 -2.91 -0.02 2.36 16 32 H 0.18 2.09 8.06 -2.91 -0.02 2.06 16 33 H 0.15 3.44 8.06 -2.91 -0.02 3.42 16 Total: -1.00 -76.40 280.29 6.43 -69.97 By element: Atomic # 1 Polarization: 4.36 SS G_CDS: 0.92 Total: 5.28 kcal Atomic # 6 Polarization: -51.52 SS G_CDS: 4.42 Total: -47.11 kcal Atomic # 7 Polarization: -76.19 SS G_CDS: -1.42 Total: -77.61 kcal Atomic # 9 Polarization: -6.79 SS G_CDS: 0.72 Total: -6.07 kcal Atomic # 14 Polarization: 53.74 SS G_CDS: 1.80 Total: 55.53 kcal Total: -76.40 6.43 -69.97 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259739564.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.827 kcal (2) G-P(sol) polarization free energy of solvation -76.399 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.572 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.426 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.973 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.146 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds