Wall clock time and date at job start Mon Mar 30 2020 05:50:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.50700 * 109.47635 * 2 1 4 4 C 1.35180 * 126.63387 * 89.99482 * 3 2 1 5 5 C 1.42420 * 103.93198 * 180.02562 * 4 3 2 6 6 C 1.47998 * 126.95886 * 179.97438 * 5 4 3 7 7 C 1.36621 * 126.34077 * 179.97438 * 6 5 4 8 8 C 1.39470 * 107.86149 * 179.97438 * 7 6 5 9 9 C 1.50700 * 125.69979 * 180.02562 * 8 7 6 10 10 C 1.50692 * 109.47274 * 124.99625 * 9 8 7 11 11 H 1.08002 * 120.00088 * 0.02562 * 10 9 8 12 12 C 1.37887 * 120.00119 * 180.02562 * 10 9 8 13 13 N 1.31514 * 119.99586 * 0.02562 * 12 10 9 14 14 Si 1.86798 * 120.00199 * 180.02562 * 12 10 9 15 15 H 1.48502 * 109.47192 * 59.99233 * 14 12 10 16 16 H 1.48496 * 109.47328 * 179.97438 * 14 12 10 17 17 H 1.48506 * 109.46954 * 300.00102 * 14 12 10 18 18 N 1.30903 * 108.60426 * 359.75674 * 8 7 6 19 19 N 1.36319 * 126.34077 * 359.97438 * 6 5 4 20 20 H 0.97001 * 126.13945 * 359.97414 * 19 6 5 21 21 N 1.31146 * 106.08281 * 0.24168 * 5 4 3 22 22 O 1.20901 * 111.38528 * 359.57697 * 21 5 4 23 23 H 1.09000 * 109.47284 * 179.97438 * 1 2 3 24 24 H 1.09003 * 109.46907 * 299.99880 * 1 2 3 25 25 H 1.09008 * 109.47019 * 59.99663 * 1 2 3 26 26 H 1.09006 * 109.46983 * 240.00644 * 2 1 3 27 27 H 1.08996 * 109.47249 * 120.00708 * 2 1 3 28 28 H 1.08001 * 128.03798 * 0.02562 * 4 3 2 29 29 H 1.08004 * 126.06724 * 359.97438 * 7 6 5 30 30 H 1.08994 * 109.46952 * 244.99962 * 9 8 7 31 31 H 1.09004 * 109.46848 * 4.99438 * 9 8 7 32 32 H 0.97003 * 119.99871 * 180.02562 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.3013 2.1813 1.0848 5 6 2.7388 3.4201 0.5351 6 6 3.1639 4.6246 1.2827 7 6 3.5821 5.8074 0.7418 8 6 3.8869 6.6737 1.7915 9 6 4.3860 8.0884 1.6476 10 6 3.4801 9.0207 2.4098 11 1 2.6283 8.6281 2.9454 12 6 3.7386 10.3750 2.4236 13 7 4.7755 10.8531 1.7710 14 14 2.6161 11.5307 3.3690 15 1 2.6115 11.1516 4.8049 16 1 3.1079 12.9246 3.2271 17 1 1.2368 11.4342 2.8273 18 7 3.6615 6.0547 2.9227 19 7 3.2105 4.7593 2.6384 20 1 2.9702 4.0814 3.2892 21 7 2.6832 3.2794 -0.7676 22 8 2.2987 2.1754 -1.0758 23 1 -0.3634 -1.0276 -0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 1.8933 -0.5138 -0.8901 27 1 1.8933 -0.5139 0.8899 28 1 2.2063 1.9120 2.1264 29 1 3.6625 6.0318 -0.3116 30 1 5.3981 8.1588 2.0459 31 1 4.3901 8.3667 0.5937 32 1 4.9577 11.8059 1.7810 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259749001.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:50:35 Heat of formation + Delta-G solvation = 117.664588 kcal Electronic energy + Delta-G solvation = -16609.332318 eV Core-core repulsion = 13767.495763 eV Total energy + Delta-G solvation = -2841.836555 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 247.106 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -45.02540 -40.44783 -35.22581 -34.38367 -33.28692 -31.34410 -30.41797 -29.22946 -27.66637 -24.46860 -23.99559 -23.22791 -22.17363 -19.52459 -18.88734 -17.86161 -17.61714 -16.59123 -16.19451 -15.11109 -14.87290 -14.48553 -14.11722 -13.71445 -13.43903 -13.10375 -12.96312 -12.34630 -12.11590 -11.91244 -11.74392 -11.48905 -11.22497 -10.87337 -10.69535 -10.65955 -10.07593 -9.67007 -9.62139 -9.36485 -8.50020 -8.24670 -8.04389 -5.98424 -3.99596 1.16561 1.53467 2.85442 2.92200 3.12654 3.38527 3.41389 3.44720 3.62155 4.09508 4.20397 4.51275 4.60463 4.74553 4.76173 4.94896 5.17123 5.32334 5.37239 5.38865 5.51882 5.56422 5.69650 5.77677 6.13961 6.30039 6.59897 7.29919 7.45356 7.58622 7.74406 7.98410 8.13825 8.30882 8.49294 9.03468 9.62877 11.12757 Molecular weight = 247.11amu Principal moments of inertia in cm(-1) A = 0.048415 B = 0.003947 C = 0.003881 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 578.193895 B = 7091.919780 C = 7213.776898 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.042 4.042 3 C -0.028 4.028 4 C -0.227 4.227 5 C 0.090 3.910 6 C 0.115 3.885 7 C -0.216 4.216 8 C 0.117 3.883 9 C 0.086 3.914 10 C -0.507 4.507 11 H 0.059 0.941 12 C 0.057 3.943 13 N -0.897 5.897 14 Si 0.898 3.102 15 H -0.276 1.276 16 H -0.287 1.287 17 H -0.277 1.277 18 N -0.266 5.266 19 N -0.484 5.484 20 H 0.430 0.570 21 N -0.341 5.341 22 O 0.109 5.891 23 H 0.069 0.931 24 H 0.060 0.940 25 H 0.062 0.938 26 H 0.090 0.910 27 H 0.096 0.904 28 H 0.171 0.829 29 H 0.147 0.853 30 H 0.041 0.959 31 H 0.042 0.958 32 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.592 -22.728 -2.949 23.848 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.080 4.080 3 C -0.092 4.092 4 C -0.248 4.248 5 C -0.068 4.068 6 C -0.012 4.012 7 C -0.248 4.248 8 C -0.049 4.049 9 C 0.047 3.953 10 C -0.546 4.546 11 H 0.077 0.923 12 C -0.144 4.144 13 N -0.536 5.536 14 Si 0.725 3.275 15 H -0.202 1.202 16 H -0.213 1.213 17 H -0.203 1.203 18 N -0.090 5.090 19 N -0.194 5.194 20 H 0.272 0.728 21 N -0.043 5.043 22 O 0.039 5.961 23 H 0.088 0.912 24 H 0.080 0.920 25 H 0.081 0.919 26 H 0.108 0.892 27 H 0.115 0.885 28 H 0.188 0.812 29 H 0.165 0.835 30 H 0.059 0.941 31 H 0.060 0.940 32 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -6.187 -21.646 -2.791 22.686 hybrid contribution -0.866 -0.067 0.772 1.162 sum -7.053 -21.714 -2.018 22.919 Atomic orbital electron populations 1.21808 0.93411 1.02720 1.03052 1.20126 0.96689 0.86412 1.04795 1.24383 1.01717 0.97023 0.86044 1.22407 1.08354 0.93035 1.01049 1.20982 1.02461 0.93800 0.89540 1.17938 1.05682 0.92720 0.84843 1.21556 1.10188 0.92214 1.00844 1.23275 0.94833 0.98344 0.88416 1.17905 0.96837 0.81782 0.98749 1.21021 1.11375 0.91269 1.30967 0.92316 1.24981 0.95490 0.98215 0.95694 1.69939 1.27600 1.13675 1.42368 0.86563 0.80865 0.79566 0.80476 1.20193 1.21265 1.20268 1.77519 1.20343 0.88352 1.22755 1.46583 1.55866 1.13528 1.03463 0.72756 1.74252 1.16460 0.98584 1.14990 1.84841 1.60947 1.17227 1.33041 0.91224 0.92038 0.91892 0.89180 0.88531 0.81186 0.83501 0.94097 0.94008 0.92797 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.77 9.89 37.16 0.37 -0.40 16 2 C -0.04 -0.23 6.49 -27.89 -0.18 -0.41 16 3 C -0.03 -0.28 6.72 -35.40 -0.24 -0.51 16 4 C -0.23 -2.50 11.08 -39.06 -0.43 -2.93 16 5 C 0.09 1.38 7.20 -82.55 -0.59 0.79 16 6 C 0.12 2.09 7.15 -82.46 -0.59 1.50 16 7 C -0.22 -4.52 10.66 -39.71 -0.42 -4.95 16 8 C 0.12 2.78 6.41 -82.53 -0.53 2.25 16 9 C 0.09 2.31 5.55 -29.04 -0.16 2.15 16 10 C -0.51 -14.79 9.06 -34.44 -0.31 -15.10 16 11 H 0.06 1.72 7.74 -52.49 -0.41 1.32 16 12 C 0.06 1.66 5.46 -17.82 -0.10 1.57 16 13 N -0.90 -26.92 13.29 55.43 0.74 -26.18 16 14 Si 0.90 22.20 29.54 -169.99 -5.02 17.18 16 15 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 16 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 17 H -0.28 -6.76 7.11 56.52 0.40 -6.35 16 18 N -0.27 -6.01 12.64 33.60 0.42 -5.58 16 19 N -0.48 -8.53 7.43 33.29 0.25 -8.28 16 20 H 0.43 5.67 8.96 -182.61 -1.64 4.03 16 21 N -0.34 -5.35 12.12 33.29 0.40 -4.95 16 22 O 0.11 1.39 11.18 17.08 0.19 1.58 16 23 H 0.07 0.23 8.14 -51.93 -0.42 -0.19 16 24 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 25 H 0.06 0.37 8.14 -51.92 -0.42 -0.06 16 26 H 0.09 0.38 8.14 -51.93 -0.42 -0.04 16 27 H 0.10 0.36 8.14 -51.93 -0.42 -0.07 16 28 H 0.17 1.35 8.06 -52.49 -0.42 0.92 16 29 H 0.15 2.91 8.06 -52.48 -0.42 2.49 16 30 H 0.04 1.15 8.14 -51.93 -0.42 0.73 16 31 H 0.04 1.14 8.12 -51.93 -0.42 0.72 16 32 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 LS Contribution 291.27 15.07 4.39 4.39 Total: -1.00 -33.48 291.27 -6.80 -40.28 By element: Atomic # 1 Polarization: 2.58 SS G_CDS: -4.98 Total: -2.40 kcal Atomic # 6 Polarization: -12.84 SS G_CDS: -3.19 Total: -16.03 kcal Atomic # 7 Polarization: -46.81 SS G_CDS: 1.81 Total: -44.99 kcal Atomic # 8 Polarization: 1.39 SS G_CDS: 0.19 Total: 1.58 kcal Atomic # 14 Polarization: 22.20 SS G_CDS: -5.02 Total: 17.18 kcal Total LS contribution 4.39 Total: 4.39 kcal Total: -33.48 -6.80 -40.28 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259749001.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 157.945 kcal (2) G-P(sol) polarization free energy of solvation -33.479 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 124.465 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.801 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.280 kcal (6) G-S(sol) free energy of system = (1) + (5) 117.665 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds