Wall clock time and date at job start Mon Mar 30 2020 05:50:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.50700 * 109.47635 * 2 1 4 4 C 1.35180 * 126.63387 * 89.99482 * 3 2 1 5 5 C 1.42420 * 103.93198 * 180.02562 * 4 3 2 6 6 C 1.47998 * 126.95886 * 179.97438 * 5 4 3 7 7 C 1.36621 * 126.34077 * 179.97438 * 6 5 4 8 8 C 1.39470 * 107.86149 * 179.97438 * 7 6 5 9 9 C 1.50700 * 125.69979 * 180.02562 * 8 7 6 10 10 C 1.50692 * 109.47274 * 124.99625 * 9 8 7 11 11 H 1.08002 * 120.00088 * 0.02562 * 10 9 8 12 12 C 1.37887 * 120.00119 * 180.02562 * 10 9 8 13 13 N 1.31514 * 119.99586 * 0.02562 * 12 10 9 14 14 Si 1.86798 * 120.00199 * 180.02562 * 12 10 9 15 15 H 1.48502 * 109.47192 * 59.99233 * 14 12 10 16 16 H 1.48496 * 109.47328 * 179.97438 * 14 12 10 17 17 H 1.48506 * 109.46954 * 300.00102 * 14 12 10 18 18 N 1.30903 * 108.60426 * 359.75674 * 8 7 6 19 19 N 1.36319 * 126.34077 * 359.97438 * 6 5 4 20 20 H 0.97001 * 126.13945 * 359.97414 * 19 6 5 21 21 N 1.31146 * 106.08281 * 0.24168 * 5 4 3 22 22 O 1.20901 * 111.38528 * 359.57697 * 21 5 4 23 23 H 1.09000 * 109.47284 * 179.97438 * 1 2 3 24 24 H 1.09003 * 109.46907 * 299.99880 * 1 2 3 25 25 H 1.09008 * 109.47019 * 59.99663 * 1 2 3 26 26 H 1.09006 * 109.46983 * 240.00644 * 2 1 3 27 27 H 1.08996 * 109.47249 * 120.00708 * 2 1 3 28 28 H 1.08001 * 128.03798 * 0.02562 * 4 3 2 29 29 H 1.08004 * 126.06724 * 359.97438 * 7 6 5 30 30 H 1.08994 * 109.46952 * 244.99962 * 9 8 7 31 31 H 1.09004 * 109.46848 * 4.99438 * 9 8 7 32 32 H 0.97003 * 119.99871 * 180.02562 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.3013 2.1813 1.0848 5 6 2.7388 3.4201 0.5351 6 6 3.1639 4.6246 1.2827 7 6 3.5821 5.8074 0.7418 8 6 3.8869 6.6737 1.7915 9 6 4.3860 8.0884 1.6476 10 6 3.4801 9.0207 2.4098 11 1 2.6283 8.6281 2.9454 12 6 3.7386 10.3750 2.4236 13 7 4.7755 10.8531 1.7710 14 14 2.6161 11.5307 3.3690 15 1 2.6115 11.1516 4.8049 16 1 3.1079 12.9246 3.2271 17 1 1.2368 11.4342 2.8273 18 7 3.6615 6.0547 2.9227 19 7 3.2105 4.7593 2.6384 20 1 2.9702 4.0814 3.2892 21 7 2.6832 3.2794 -0.7676 22 8 2.2987 2.1754 -1.0758 23 1 -0.3634 -1.0276 -0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 1.8933 -0.5138 -0.8901 27 1 1.8933 -0.5139 0.8899 28 1 2.2063 1.9120 2.1264 29 1 3.6625 6.0318 -0.3116 30 1 5.3981 8.1588 2.0459 31 1 4.3901 8.3667 0.5937 32 1 4.9577 11.8059 1.7810 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259749001.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:50:35 Heat of formation + Delta-G solvation = 95.461637 kcal Electronic energy + Delta-G solvation = -16610.295110 eV Core-core repulsion = 13767.495763 eV Total energy + Delta-G solvation = -2842.799347 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 247.106 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -46.07693 -42.06883 -36.02005 -35.66749 -35.08645 -33.19778 -31.25874 -30.68219 -29.67666 -25.65973 -25.19787 -24.75926 -23.25220 -20.85955 -20.63089 -18.95604 -18.71203 -18.46587 -17.73334 -16.58334 -16.04583 -15.74119 -15.38208 -14.77266 -14.65709 -14.37109 -14.25133 -14.01827 -13.59735 -13.41060 -12.79453 -12.69681 -12.60258 -12.35666 -12.07689 -11.90473 -11.83247 -11.70356 -11.38739 -10.62228 -10.47607 -10.06554 -9.58797 -8.21116 -6.31480 -0.03979 0.60632 1.38499 1.43417 1.45589 1.52795 1.66896 1.97143 2.11729 2.43025 2.95267 3.11667 3.26229 3.80753 3.89622 4.05935 4.16088 4.37012 4.45440 4.53793 4.62590 4.75536 4.92150 5.00769 5.07707 5.17384 5.25126 5.39650 5.41549 5.56116 5.71883 6.13544 6.33817 6.72111 6.79534 7.16346 7.35498 8.90337 Molecular weight = 247.11amu Principal moments of inertia in cm(-1) A = 0.048415 B = 0.003947 C = 0.003881 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 578.193895 B = 7091.919780 C = 7213.776898 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.040 4.040 3 C -0.013 4.013 4 C -0.221 4.221 5 C 0.057 3.943 6 C 0.148 3.852 7 C -0.251 4.251 8 C 0.096 3.904 9 C 0.094 3.906 10 C -0.529 4.529 11 H 0.052 0.948 12 C 0.006 3.994 13 N -0.928 5.928 14 Si 0.968 3.032 15 H -0.270 1.270 16 H -0.276 1.276 17 H -0.269 1.269 18 N -0.295 5.295 19 N -0.457 5.457 20 H 0.452 0.548 21 N -0.370 5.370 22 O 0.114 5.886 23 H 0.090 0.910 24 H 0.056 0.944 25 H 0.050 0.950 26 H 0.106 0.894 27 H 0.124 0.876 28 H 0.205 0.795 29 H 0.146 0.854 30 H 0.016 0.984 31 H 0.025 0.975 32 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.296 -25.329 -2.126 26.738 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.077 4.077 3 C -0.076 4.076 4 C -0.243 4.243 5 C -0.100 4.100 6 C 0.018 3.982 7 C -0.282 4.282 8 C -0.069 4.069 9 C 0.055 3.945 10 C -0.567 4.567 11 H 0.070 0.930 12 C -0.192 4.192 13 N -0.568 5.568 14 Si 0.792 3.208 15 H -0.195 1.195 16 H -0.201 1.201 17 H -0.194 1.194 18 N -0.120 5.120 19 N -0.169 5.169 20 H 0.299 0.701 21 N -0.071 5.071 22 O 0.041 5.959 23 H 0.109 0.891 24 H 0.075 0.925 25 H 0.069 0.931 26 H 0.124 0.876 27 H 0.142 0.858 28 H 0.222 0.778 29 H 0.163 0.837 30 H 0.034 0.966 31 H 0.043 0.957 32 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -7.885 -24.246 -1.944 25.570 hybrid contribution -0.378 0.503 0.450 0.773 sum -8.262 -23.743 -1.494 25.184 Atomic orbital electron populations 1.21826 0.93014 1.03911 1.02263 1.20427 0.96775 0.83557 1.06978 1.25229 0.99659 0.98191 0.84553 1.22778 1.07521 0.90932 1.03034 1.20954 1.04817 0.94311 0.89916 1.18068 1.02583 0.92742 0.84763 1.21524 1.12912 0.93315 1.00474 1.22762 0.96625 0.97492 0.89979 1.17576 0.95527 0.84197 0.97202 1.21269 1.11643 0.92283 1.31513 0.93002 1.25892 0.97018 0.99827 0.96499 1.70056 1.29081 1.14314 1.43349 0.85458 0.78857 0.77422 0.79039 1.19481 1.20124 1.19426 1.77367 1.21618 0.90401 1.22582 1.46423 1.54031 1.12465 1.04018 0.70085 1.74270 1.17101 1.00124 1.15591 1.84805 1.60202 1.16663 1.34186 0.89087 0.92468 0.93104 0.87563 0.85794 0.77819 0.83655 0.96579 0.95673 0.92385 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.98 9.89 71.98 0.71 -0.26 16 2 C -0.04 -0.25 6.49 29.85 0.19 -0.06 16 3 C -0.01 -0.21 6.72 24.98 0.17 -0.04 16 4 C -0.22 -4.13 11.08 22.61 0.25 -3.88 16 5 C 0.06 1.66 7.20 42.88 0.31 1.96 16 6 C 0.15 5.30 7.15 40.66 0.29 5.59 16 7 C -0.25 -10.89 10.66 22.19 0.24 -10.65 16 8 C 0.10 4.76 6.41 42.99 0.28 5.04 16 9 C 0.09 5.34 5.55 29.10 0.16 5.51 16 10 C -0.53 -31.87 9.06 25.60 0.23 -31.64 16 11 H 0.05 3.12 7.74 -2.91 -0.02 3.10 16 12 C 0.01 0.35 5.46 84.66 0.46 0.82 16 13 N -0.93 -57.11 13.29 21.45 0.28 -56.83 16 14 Si 0.97 45.90 29.54 68.60 2.03 47.93 16 15 H -0.27 -12.43 7.11 99.48 0.71 -11.73 16 16 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16 17 H -0.27 -12.36 7.11 99.48 0.71 -11.65 16 18 N -0.29 -13.51 12.64 -47.60 -0.60 -14.11 16 19 N -0.46 -15.61 7.43 -48.58 -0.36 -15.97 16 20 H 0.45 10.84 8.96 -213.33 -1.91 8.92 16 21 N -0.37 -11.33 12.12 -49.48 -0.60 -11.93 16 22 O 0.11 2.69 11.18 71.31 0.80 3.48 16 23 H 0.09 0.24 8.14 -2.39 -0.02 0.22 16 24 H 0.06 0.43 8.14 -2.39 -0.02 0.41 16 25 H 0.05 0.46 8.14 -2.38 -0.02 0.44 16 26 H 0.11 0.42 8.14 -2.38 -0.02 0.40 16 27 H 0.12 0.22 8.14 -2.39 -0.02 0.20 16 28 H 0.20 2.24 8.06 -2.91 -0.02 2.22 16 29 H 0.15 6.14 8.06 -2.91 -0.02 6.11 16 30 H 0.02 0.97 8.14 -2.39 -0.02 0.95 16 31 H 0.03 1.47 8.12 -2.39 -0.02 1.45 16 32 H 0.27 15.36 8.31 -92.71 -0.77 14.59 16 Total: -1.00 -75.29 291.27 4.07 -71.22 By element: Atomic # 1 Polarization: 4.60 SS G_CDS: -0.77 Total: 3.83 kcal Atomic # 6 Polarization: -30.90 SS G_CDS: 3.29 Total: -27.61 kcal Atomic # 7 Polarization: -97.57 SS G_CDS: -1.28 Total: -98.85 kcal Atomic # 8 Polarization: 2.69 SS G_CDS: 0.80 Total: 3.48 kcal Atomic # 14 Polarization: 45.90 SS G_CDS: 2.03 Total: 47.93 kcal Total: -75.29 4.07 -71.22 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259749001.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 166.686 kcal (2) G-P(sol) polarization free energy of solvation -75.294 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 91.391 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.070 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.224 kcal (6) G-S(sol) free energy of system = (1) + (5) 95.462 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds