Wall clock time and date at job start Mon Mar 30 2020 06:07:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86799 * 119.99943 * 2 1 4 4 H 1.48501 * 109.46763 * 239.99211 * 3 2 1 5 5 H 1.48497 * 109.47027 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47240 * 119.99550 * 3 2 1 7 7 C 1.37877 * 119.99754 * 179.97438 * 2 1 3 8 8 H 1.08011 * 119.99740 * 180.02562 * 7 2 1 9 9 C 1.50696 * 120.00514 * 0.02562 * 7 2 1 10 10 C 1.53004 * 109.47643 * 179.97438 * 9 7 2 11 11 C 1.52999 * 109.47310 * 180.02562 * 10 9 7 12 12 C 1.50695 * 109.47105 * 179.97438 * 11 10 9 13 13 C 1.38835 * 119.82624 * 265.00367 * 12 11 10 14 14 C 1.37699 * 120.69258 * 179.72280 * 13 12 11 15 15 C 1.39166 * 119.96770 * 359.97438 * 14 13 12 16 16 N 1.37702 * 133.40266 * 180.02562 * 15 14 13 17 17 H 0.97003 * 125.06585 * 359.94225 * 16 15 14 18 18 C 1.36884 * 109.87296 * 179.97438 * 16 15 14 19 19 C 1.34211 * 109.90967 * 0.02562 * 18 16 15 20 20 C 1.40592 * 119.44731 * 0.02562 * 15 14 13 21 21 C 1.37838 * 119.82063 * 84.72266 * 12 11 10 22 22 F 1.35100 * 120.19540 * 0.26149 * 21 12 11 23 23 H 0.96993 * 119.99751 * 0.02562 * 1 2 3 24 24 H 1.09003 * 109.46846 * 59.99580 * 9 7 2 25 25 H 1.09000 * 109.47337 * 300.00313 * 9 7 2 26 26 H 1.09002 * 109.46435 * 60.00075 * 10 9 7 27 27 H 1.09001 * 109.46676 * 300.00464 * 10 9 7 28 28 H 1.08999 * 109.46711 * 59.99989 * 11 10 9 29 29 H 1.09003 * 109.46648 * 300.00156 * 11 10 9 30 30 H 1.07999 * 119.64732 * 359.69329 * 13 12 11 31 31 H 1.08002 * 120.01846 * 179.97438 * 14 13 12 32 32 H 1.08004 * 125.04752 * 179.97438 * 18 16 15 33 33 H 1.08005 * 126.50733 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6962 -1.2124 5 1 1.2842 2.7464 -0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0846 -1.1941 0.0010 9 6 1.2511 -2.4992 0.0005 10 6 2.2453 -3.6622 0.0005 11 6 1.4803 -4.9872 -0.0001 12 6 2.4596 -6.1326 -0.0007 13 6 2.8285 -6.7250 -1.2009 14 6 3.7261 -7.7689 -1.2228 15 6 4.2737 -8.2399 -0.0332 16 7 5.1721 -9.2402 0.2642 17 1 5.5952 -9.8211 -0.3874 18 6 5.3789 -9.2931 1.6163 19 6 4.6409 -8.3541 2.2286 20 6 3.9016 -7.6417 1.1835 21 6 2.9886 -6.5827 1.1898 22 9 2.6277 -6.0036 2.3558 23 1 -0.4849 0.8400 -0.0004 24 1 0.6247 -2.5571 -0.8897 25 1 0.6240 -2.5568 0.8902 26 1 2.8719 -3.6044 0.8906 27 1 2.8720 -3.6043 -0.8894 28 1 0.8540 -5.0446 -0.8903 29 1 0.8533 -5.0451 0.8897 30 1 2.4066 -6.3635 -2.1271 31 1 4.0052 -8.2220 -2.1626 32 1 6.0375 -9.9879 2.1162 33 1 4.5997 -8.1605 3.2903 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259763628.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:07:35 Heat of formation + Delta-G solvation = -11.063557 kcal Electronic energy + Delta-G solvation = -16818.359134 eV Core-core repulsion = 13951.020547 eV Total energy + Delta-G solvation = -2867.338587 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 247.107 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -48.48517 -41.17225 -37.33876 -34.23491 -32.26479 -31.64546 -29.60173 -28.60313 -26.42237 -23.59749 -22.51545 -21.28666 -20.58438 -19.87864 -18.42767 -16.89014 -16.22539 -15.45243 -15.34602 -15.03843 -14.64172 -14.36379 -14.16191 -13.70223 -13.37944 -12.82847 -12.70610 -12.37493 -12.11730 -11.55117 -11.29633 -11.17299 -11.04116 -10.66118 -10.52100 -10.40798 -9.62622 -9.56490 -9.24790 -9.01990 -8.26491 -8.15100 -7.57125 -5.91954 -3.93716 1.03995 1.55802 2.60561 2.97820 3.38965 3.42633 3.45830 3.78525 4.47240 4.52920 4.62266 4.88541 5.08770 5.11826 5.24546 5.43464 5.45604 5.74280 5.81543 5.89082 6.16616 6.20125 6.32778 6.44153 6.53702 6.57092 6.67892 6.92456 7.00631 7.13245 7.26058 7.38274 7.77083 7.93295 8.09215 8.52525 9.13260 9.69674 11.19451 Molecular weight = 247.11amu Principal moments of inertia in cm(-1) A = 0.039566 B = 0.004293 C = 0.004215 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 707.505082 B = 6521.083406 C = 6641.691065 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.056 3.944 3 Si 0.891 3.109 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.277 1.277 7 C -0.519 4.519 8 H 0.054 0.946 9 C 0.021 3.979 10 C -0.103 4.103 11 C -0.079 4.079 12 C -0.126 4.126 13 C -0.065 4.065 14 C -0.144 4.144 15 C 0.112 3.888 16 N -0.597 5.597 17 H 0.416 0.584 18 C 0.044 3.956 19 C -0.192 4.192 20 C -0.145 4.145 21 C 0.142 3.858 22 F -0.132 7.132 23 H 0.260 0.740 24 H 0.016 0.984 25 H 0.016 0.984 26 H 0.047 0.953 27 H 0.048 0.952 28 H 0.071 0.929 29 H 0.069 0.931 30 H 0.136 0.864 31 H 0.123 0.877 32 H 0.171 0.829 33 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.313 -20.668 -0.326 22.671 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.145 4.145 3 Si 0.719 3.281 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.203 1.203 7 C -0.557 4.557 8 H 0.072 0.928 9 C -0.016 4.016 10 C -0.140 4.140 11 C -0.116 4.116 12 C -0.128 4.128 13 C -0.085 4.085 14 C -0.165 4.165 15 C 0.005 3.995 16 N -0.201 5.201 17 H 0.252 0.748 18 C -0.082 4.082 19 C -0.217 4.217 20 C -0.150 4.150 21 C 0.122 3.878 22 F -0.110 7.110 23 H 0.070 0.930 24 H 0.034 0.966 25 H 0.035 0.965 26 H 0.066 0.934 27 H 0.067 0.933 28 H 0.090 0.910 29 H 0.088 0.912 30 H 0.154 0.846 31 H 0.141 0.859 32 H 0.188 0.812 33 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 9.217 -20.614 -0.324 22.584 hybrid contribution 0.671 0.751 -0.026 1.007 sum 9.888 -19.863 -0.349 22.191 Atomic orbital electron populations 1.69959 1.06024 1.26578 1.51099 1.25018 0.94835 0.99158 0.95454 0.86674 0.79590 0.83235 0.78595 1.20294 1.21321 1.20263 1.21246 0.93011 0.91167 1.50267 0.92813 1.19111 0.94010 0.91267 0.97213 1.21621 0.99017 0.92944 1.00462 1.20669 0.95898 0.92256 1.02786 1.19993 1.01656 0.99861 0.91292 1.20642 0.96157 0.94287 0.97388 1.19987 1.01330 1.00310 0.94894 1.17942 0.94909 0.92133 0.94544 1.41743 1.39603 1.31250 1.07478 0.74779 1.21758 1.02439 1.01596 0.82393 1.21632 1.02166 0.99453 0.98494 1.19069 1.02220 0.99450 0.94273 1.16902 0.96474 0.92855 0.81523 1.91478 1.90120 1.83114 1.46298 0.93034 0.96584 0.96543 0.93372 0.93306 0.91003 0.91240 0.84598 0.85890 0.81191 0.83496 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.66 13.29 55.43 0.74 -26.93 16 2 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 3 Si 0.89 22.26 29.54 -169.99 -5.02 17.24 16 4 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 5 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 6 H -0.28 -6.82 7.11 56.52 0.40 -6.41 16 7 C -0.52 -15.27 9.11 -34.44 -0.31 -15.58 16 8 H 0.05 1.54 7.74 -52.48 -0.41 1.14 16 9 C 0.02 0.56 4.97 -27.88 -0.14 0.43 16 10 C -0.10 -2.26 5.14 -26.73 -0.14 -2.40 16 11 C -0.08 -1.45 5.10 -27.89 -0.14 -1.59 16 12 C -0.13 -2.08 5.14 -104.55 -0.54 -2.61 16 13 C -0.07 -0.90 9.64 -39.56 -0.38 -1.28 16 14 C -0.14 -1.73 10.07 -39.43 -0.40 -2.12 16 15 C 0.11 1.42 7.27 -84.00 -0.61 0.81 16 16 N -0.60 -5.47 6.07 -10.65 -0.06 -5.53 16 17 H 0.42 2.32 8.96 -40.82 -0.37 1.95 16 18 C 0.04 0.39 11.82 -16.72 -0.20 0.19 16 19 C -0.19 -2.33 11.08 -37.67 -0.42 -2.75 16 20 C -0.14 -2.17 6.36 -105.09 -0.67 -2.83 16 21 C 0.14 2.42 7.28 -39.14 -0.28 2.14 16 22 F -0.13 -2.43 16.56 2.25 0.04 -2.39 16 23 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 24 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 25 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 26 H 0.05 1.09 8.14 -51.93 -0.42 0.67 16 27 H 0.05 1.05 8.14 -51.93 -0.42 0.62 16 28 H 0.07 1.22 8.05 -51.93 -0.42 0.81 16 29 H 0.07 1.31 7.78 -51.93 -0.40 0.91 16 30 H 0.14 1.60 8.06 -52.49 -0.42 1.18 16 31 H 0.12 1.09 8.06 -52.49 -0.42 0.67 16 32 H 0.17 0.83 8.06 -52.48 -0.42 0.40 16 33 H 0.15 1.58 8.06 -52.48 -0.42 1.16 16 LS Contribution 290.85 15.07 4.38 4.38 Total: -1.00 -33.57 290.85 -8.36 -41.94 By element: Atomic # 1 Polarization: 1.44 SS G_CDS: -4.11 Total: -2.67 kcal Atomic # 6 Polarization: -21.73 SS G_CDS: -4.32 Total: -26.05 kcal Atomic # 7 Polarization: -33.13 SS G_CDS: 0.67 Total: -32.46 kcal Atomic # 9 Polarization: -2.43 SS G_CDS: 0.04 Total: -2.39 kcal Atomic # 14 Polarization: 22.26 SS G_CDS: -5.02 Total: 17.24 kcal Total LS contribution 4.38 Total: 4.38 kcal Total: -33.57 -8.36 -41.94 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259763628.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.875 kcal (2) G-P(sol) polarization free energy of solvation -33.575 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.700 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.364 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.939 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.064 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds