Wall clock time and date at job start Mon Mar 30 2020 06:07:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86799 * 119.99943 * 2 1 4 4 H 1.48501 * 109.46763 * 239.99211 * 3 2 1 5 5 H 1.48497 * 109.47027 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47240 * 119.99550 * 3 2 1 7 7 C 1.37877 * 119.99754 * 179.97438 * 2 1 3 8 8 H 1.08011 * 119.99740 * 180.02562 * 7 2 1 9 9 C 1.50696 * 120.00514 * 0.02562 * 7 2 1 10 10 C 1.53004 * 109.47643 * 179.97438 * 9 7 2 11 11 C 1.52999 * 109.47310 * 180.02562 * 10 9 7 12 12 C 1.50695 * 109.47105 * 179.97438 * 11 10 9 13 13 C 1.38835 * 119.82624 * 265.00367 * 12 11 10 14 14 C 1.37699 * 120.69258 * 179.72280 * 13 12 11 15 15 C 1.39166 * 119.96770 * 359.97438 * 14 13 12 16 16 N 1.37702 * 133.40266 * 180.02562 * 15 14 13 17 17 H 0.97003 * 125.06585 * 359.94225 * 16 15 14 18 18 C 1.36884 * 109.87296 * 179.97438 * 16 15 14 19 19 C 1.34211 * 109.90967 * 0.02562 * 18 16 15 20 20 C 1.40592 * 119.44731 * 0.02562 * 15 14 13 21 21 C 1.37838 * 119.82063 * 84.72266 * 12 11 10 22 22 F 1.35100 * 120.19540 * 0.26149 * 21 12 11 23 23 H 0.96993 * 119.99751 * 0.02562 * 1 2 3 24 24 H 1.09003 * 109.46846 * 59.99580 * 9 7 2 25 25 H 1.09000 * 109.47337 * 300.00313 * 9 7 2 26 26 H 1.09002 * 109.46435 * 60.00075 * 10 9 7 27 27 H 1.09001 * 109.46676 * 300.00464 * 10 9 7 28 28 H 1.08999 * 109.46711 * 59.99989 * 11 10 9 29 29 H 1.09003 * 109.46648 * 300.00156 * 11 10 9 30 30 H 1.07999 * 119.64732 * 359.69329 * 13 12 11 31 31 H 1.08002 * 120.01846 * 179.97438 * 14 13 12 32 32 H 1.08004 * 125.04752 * 179.97438 * 18 16 15 33 33 H 1.08005 * 126.50733 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6962 -1.2124 5 1 1.2842 2.7464 -0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0846 -1.1941 0.0010 9 6 1.2511 -2.4992 0.0005 10 6 2.2453 -3.6622 0.0005 11 6 1.4803 -4.9872 -0.0001 12 6 2.4596 -6.1326 -0.0007 13 6 2.8285 -6.7250 -1.2009 14 6 3.7261 -7.7689 -1.2228 15 6 4.2737 -8.2399 -0.0332 16 7 5.1721 -9.2402 0.2642 17 1 5.5952 -9.8211 -0.3874 18 6 5.3789 -9.2931 1.6163 19 6 4.6409 -8.3541 2.2286 20 6 3.9016 -7.6417 1.1835 21 6 2.9886 -6.5827 1.1898 22 9 2.6277 -6.0036 2.3558 23 1 -0.4849 0.8400 -0.0004 24 1 0.6247 -2.5571 -0.8897 25 1 0.6240 -2.5568 0.8902 26 1 2.8719 -3.6044 0.8906 27 1 2.8720 -3.6043 -0.8894 28 1 0.8540 -5.0446 -0.8903 29 1 0.8533 -5.0451 0.8897 30 1 2.4066 -6.3635 -2.1271 31 1 4.0052 -8.2220 -2.1626 32 1 6.0375 -9.9879 2.1162 33 1 4.5997 -8.1605 3.2903 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259763628.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:07:34 Heat of formation + Delta-G solvation = -30.720284 kcal Electronic energy + Delta-G solvation = -16819.211514 eV Core-core repulsion = 13951.020547 eV Total energy + Delta-G solvation = -2868.190967 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 247.107 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -49.78840 -42.07679 -38.48720 -36.07703 -34.18606 -32.60028 -31.17777 -29.54463 -28.12949 -25.37035 -23.56791 -22.62148 -21.85331 -21.29683 -19.41493 -18.47023 -17.94452 -16.73852 -16.53388 -16.44130 -16.14963 -15.59488 -15.48111 -15.11111 -14.43859 -14.28864 -14.14342 -13.78850 -13.56113 -13.14657 -12.82431 -12.77012 -12.65283 -12.28301 -12.21216 -11.97385 -11.47663 -11.33735 -11.11239 -10.59193 -10.54664 -9.18222 -8.57509 -8.19179 -6.30995 0.01998 0.47560 1.39117 1.43138 1.51128 1.76396 2.21254 2.41481 2.70903 3.12941 3.41034 3.66887 3.86240 4.12088 4.20609 4.24730 4.35133 4.52048 4.66620 4.69678 4.80961 4.94424 5.00216 5.17161 5.19229 5.24360 5.34894 5.51678 5.52536 5.64531 5.69296 5.77134 5.85508 6.12123 6.26270 6.73325 6.84834 7.37816 8.92409 Molecular weight = 247.11amu Principal moments of inertia in cm(-1) A = 0.039566 B = 0.004293 C = 0.004215 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 707.505082 B = 6521.083406 C = 6641.691065 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C 0.000 4.000 3 Si 0.966 3.034 4 H -0.264 1.264 5 H -0.280 1.280 6 H -0.269 1.269 7 C -0.547 4.547 8 H 0.056 0.944 9 C 0.025 3.975 10 C -0.087 4.087 11 C -0.069 4.069 12 C -0.141 4.141 13 C -0.080 4.080 14 C -0.123 4.123 15 C 0.103 3.897 16 N -0.579 5.579 17 H 0.437 0.563 18 C 0.083 3.917 19 C -0.239 4.239 20 C -0.169 4.169 21 C 0.103 3.897 22 F -0.154 7.154 23 H 0.264 0.736 24 H -0.001 1.001 25 H -0.013 1.013 26 H 0.033 0.967 27 H 0.056 0.944 28 H 0.084 0.916 29 H 0.052 0.948 30 H 0.154 0.846 31 H 0.164 0.836 32 H 0.221 0.779 33 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.858 -22.410 -1.584 25.403 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.198 4.198 3 Si 0.790 3.210 4 H -0.189 1.189 5 H -0.205 1.205 6 H -0.194 1.194 7 C -0.585 4.585 8 H 0.075 0.925 9 C -0.012 4.012 10 C -0.124 4.124 11 C -0.106 4.106 12 C -0.143 4.143 13 C -0.100 4.100 14 C -0.143 4.143 15 C -0.006 4.006 16 N -0.184 5.184 17 H 0.278 0.722 18 C -0.044 4.044 19 C -0.263 4.263 20 C -0.175 4.175 21 C 0.083 3.917 22 F -0.133 7.133 23 H 0.073 0.927 24 H 0.018 0.982 25 H 0.005 0.995 26 H 0.052 0.948 27 H 0.075 0.925 28 H 0.102 0.898 29 H 0.071 0.929 30 H 0.172 0.828 31 H 0.181 0.819 32 H 0.238 0.762 33 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 11.783 -22.391 -1.603 25.353 hybrid contribution -0.067 1.153 0.380 1.216 sum 11.715 -21.238 -1.223 24.286 Atomic orbital electron populations 1.70094 1.07790 1.27887 1.51554 1.25998 0.95820 1.03371 0.94594 0.85486 0.78309 0.77978 0.79192 1.18904 1.20473 1.19447 1.21670 0.93431 0.92556 1.50830 0.92548 1.19019 0.94368 0.92936 0.94909 1.21373 0.97888 0.93200 0.99988 1.20445 0.96102 0.91518 1.02568 1.19879 1.01990 0.99884 0.92579 1.20854 0.97161 0.95147 0.96795 1.20366 0.99080 0.98629 0.96247 1.18134 0.95593 0.92882 0.93978 1.41816 1.38160 1.30156 1.08237 0.72203 1.22462 1.00165 0.99854 0.81937 1.21872 1.04310 1.01469 0.98697 1.19450 1.02133 0.99252 0.96657 1.17304 0.98610 0.94712 0.81068 1.91404 1.90631 1.83770 1.47484 0.92682 0.98218 0.99464 0.94813 0.92549 0.89775 0.92900 0.82801 0.81896 0.76224 0.83422 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -58.84 13.29 21.45 0.28 -58.55 16 2 C 0.00 -0.01 5.46 84.65 0.46 0.45 16 3 Si 0.97 45.92 29.54 68.60 2.03 47.95 16 4 H -0.26 -11.95 7.11 99.48 0.71 -11.25 16 5 H -0.28 -12.83 7.11 99.48 0.71 -12.12 16 6 H -0.27 -12.41 7.11 99.48 0.71 -11.70 16 7 C -0.55 -33.06 9.11 25.60 0.23 -32.83 16 8 H 0.06 3.29 7.74 -2.90 -0.02 3.27 16 9 C 0.02 1.40 4.97 29.85 0.15 1.55 16 10 C -0.09 -4.00 5.14 30.60 0.16 -3.85 16 11 C -0.07 -2.67 5.10 29.85 0.15 -2.52 16 12 C -0.14 -4.79 5.14 -19.82 -0.10 -4.89 16 13 C -0.08 -2.10 9.64 22.29 0.21 -1.89 16 14 C -0.12 -2.57 10.07 22.37 0.23 -2.35 16 15 C 0.10 2.34 7.27 39.02 0.28 2.62 16 16 N -0.58 -8.14 6.07 -187.60 -1.14 -9.28 16 17 H 0.44 2.55 8.96 -92.71 -0.83 1.72 16 18 C 0.08 1.15 11.82 82.99 0.98 2.13 16 19 C -0.24 -5.53 11.08 23.51 0.26 -5.27 16 20 C -0.17 -5.02 6.36 -20.17 -0.13 -5.15 16 21 C 0.10 3.66 7.28 22.56 0.16 3.83 16 22 F -0.15 -6.18 16.56 44.97 0.74 -5.43 16 23 H 0.26 15.59 8.31 -92.71 -0.77 14.82 16 24 H 0.00 -0.03 8.14 -2.39 -0.02 -0.05 16 25 H -0.01 -0.80 8.14 -2.39 -0.02 -0.82 16 26 H 0.03 1.61 8.14 -2.39 -0.02 1.59 16 27 H 0.06 2.47 8.14 -2.39 -0.02 2.45 16 28 H 0.08 2.97 8.05 -2.39 -0.02 2.95 16 29 H 0.05 2.17 7.78 -2.39 -0.02 2.15 16 30 H 0.15 3.35 8.06 -2.91 -0.02 3.33 16 31 H 0.16 2.07 8.06 -2.91 -0.02 2.05 16 32 H 0.22 0.81 8.06 -2.91 -0.02 0.79 16 33 H 0.15 3.21 8.06 -2.91 -0.02 3.19 16 Total: -1.00 -76.37 290.85 5.26 -71.11 By element: Atomic # 1 Polarization: 2.08 SS G_CDS: 0.29 Total: 2.36 kcal Atomic # 6 Polarization: -51.21 SS G_CDS: 3.05 Total: -48.16 kcal Atomic # 7 Polarization: -66.98 SS G_CDS: -0.85 Total: -67.83 kcal Atomic # 9 Polarization: -6.18 SS G_CDS: 0.74 Total: -5.43 kcal Atomic # 14 Polarization: 45.92 SS G_CDS: 2.03 Total: 47.95 kcal Total: -76.37 5.26 -71.11 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259763628.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.390 kcal (2) G-P(sol) polarization free energy of solvation -76.366 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.976 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.256 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.110 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.720 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds