Wall clock time and date at job start Mon Mar 30 2020 06:39:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86798 * 119.99798 * 2 1 4 4 H 1.48501 * 109.47109 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.47309 * 299.99759 * 3 2 1 6 6 H 1.48504 * 109.47283 * 59.99930 * 3 2 1 7 7 C 1.37873 * 120.00115 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00448 * 180.02562 * 7 2 1 9 9 C 1.50704 * 119.99713 * 359.97438 * 7 2 1 10 10 H 1.09002 * 109.52452 * 300.00191 * 9 7 2 11 11 C 1.53117 * 109.52474 * 60.13050 * 9 7 2 12 12 C 1.53032 * 109.28074 * 62.30760 * 11 9 7 13 13 N 1.46845 * 109.52093 * 59.18302 * 12 11 9 14 14 C 1.46852 * 111.19842 * 298.25529 * 13 12 11 15 15 H 1.08994 * 109.46352 * 301.73527 * 14 13 12 16 16 C 1.50699 * 109.46209 * 181.75606 * 14 13 12 17 17 C 1.38266 * 119.94950 * 319.73016 * 16 14 13 18 18 C 1.38138 * 120.05905 * 179.72613 * 17 16 14 19 19 C 1.38729 * 119.94402 * 0.56717 * 18 17 16 20 20 O 1.35901 * 120.05847 * 179.68129 * 19 18 17 21 21 C 1.38731 * 119.88822 * 359.70445 * 19 18 17 22 22 C 1.38147 * 119.94619 * 0.02562 * 21 19 18 23 23 C 1.53038 * 109.51870 * 61.74428 * 14 13 12 24 24 H 0.97006 * 120.00305 * 359.97438 * 1 2 3 25 25 H 1.08998 * 109.50586 * 182.25710 * 11 9 7 26 26 H 1.09007 * 109.49947 * 302.33184 * 11 9 7 27 27 H 1.09004 * 109.46732 * 179.19580 * 12 11 9 28 28 H 1.08999 * 109.46647 * 299.17278 * 12 11 9 29 29 H 1.00904 * 111.00323 * 62.35693 * 13 12 11 30 30 H 1.08010 * 119.96612 * 359.97438 * 17 16 14 31 31 H 1.08003 * 120.03346 * 180.25044 * 18 17 16 32 32 H 0.96693 * 114.00292 * 270.02231 * 20 19 18 33 33 H 1.08005 * 120.03291 * 179.97438 * 21 19 18 34 34 H 1.07998 * 119.97677 * 179.97438 * 22 21 19 35 35 H 1.09008 * 109.50069 * 180.87836 * 23 14 13 36 36 H 1.08998 * 109.50473 * 60.76141 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8904 2.3965 -1.2125 6 1 1.8903 2.3965 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4991 -0.0005 10 1 0.6243 -2.5579 0.8894 11 6 0.3722 -2.5826 -1.2516 12 6 1.2620 -2.5608 -2.4965 13 7 2.1932 -3.6955 -2.4540 14 6 3.0795 -3.6116 -1.2862 15 1 3.6352 -2.6745 -1.3186 16 6 4.0448 -4.7687 -1.3043 17 6 3.6078 -6.0264 -1.6768 18 6 4.4920 -7.0875 -1.6997 19 6 5.8169 -6.8928 -1.3372 20 8 6.6872 -7.9364 -1.3526 21 6 6.2517 -5.6310 -0.9584 22 6 5.3648 -4.5720 -0.9425 23 6 2.2439 -3.6647 -0.0052 24 1 -0.4851 0.8401 0.0004 25 1 -0.2028 -3.5084 -1.2314 26 1 -0.3088 -1.7318 -1.2754 27 1 0.6402 -2.6345 -3.3888 28 1 1.8264 -1.6287 -2.5233 29 1 1.6950 -4.5729 -2.4676 30 1 2.5750 -6.1785 -1.9541 31 1 4.1511 -8.0689 -1.9947 32 1 6.7357 -8.4206 -0.5170 33 1 7.2825 -5.4769 -0.6753 34 1 5.7027 -3.5896 -0.6473 35 1 2.9007 -3.5867 0.8613 36 1 1.6984 -4.6076 0.0347 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259767862.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:39:02 Heat of formation + Delta-G solvation = -29.018096 kcal Electronic energy + Delta-G solvation = -17973.325167 eV Core-core repulsion = 15228.668318 eV Total energy + Delta-G solvation = -2744.656850 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 247.131 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.79048 -38.17911 -36.30705 -33.07355 -31.11276 -30.84255 -30.29532 -27.71233 -25.08629 -23.29835 -22.60660 -21.82368 -20.51991 -19.05956 -18.32537 -16.24136 -15.94991 -15.51778 -15.18467 -14.60957 -14.21078 -13.61592 -13.60396 -13.17023 -13.09480 -12.67047 -12.58921 -12.01150 -11.80767 -11.59623 -11.14657 -10.93643 -10.82001 -10.63449 -10.40769 -10.22587 -9.95658 -9.83514 -9.14979 -8.83342 -8.79592 -8.48372 -8.30193 -7.38137 -6.02810 -4.08723 1.42657 1.53715 3.26568 3.35572 3.38564 3.80438 4.30643 4.40251 4.92300 5.05974 5.10878 5.27273 5.34987 5.58520 5.73310 5.87157 5.97822 6.14972 6.17787 6.27077 6.35983 6.51000 6.55857 6.58498 6.59735 6.72813 6.93168 6.96442 7.05710 7.17883 7.37561 7.58909 7.68609 7.69865 7.89054 8.10456 8.16437 8.39928 8.93996 9.55918 11.02902 Molecular weight = 247.13amu Principal moments of inertia in cm(-1) A = 0.034911 B = 0.005800 C = 0.005295 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 801.845089 B = 4826.067203 C = 5286.478593 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.062 3.938 3 Si 0.886 3.114 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.285 1.285 7 C -0.506 4.506 8 H 0.055 0.945 9 C 0.045 3.955 10 H 0.025 0.975 11 C -0.146 4.146 12 C 0.070 3.930 13 N -0.682 5.682 14 C 0.131 3.869 15 H 0.097 0.903 16 C -0.061 4.061 17 C -0.095 4.095 18 C -0.144 4.144 19 C 0.084 3.916 20 O -0.503 6.503 21 C -0.143 4.143 22 C -0.100 4.100 23 C -0.130 4.130 24 H 0.259 0.741 25 H 0.013 0.987 26 H 0.096 0.904 27 H 0.048 0.952 28 H 0.080 0.920 29 H 0.322 0.678 30 H 0.123 0.877 31 H 0.122 0.878 32 H 0.384 0.616 33 H 0.123 0.877 34 H 0.127 0.873 35 H 0.052 0.948 36 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.138 -11.223 -1.612 13.397 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.139 4.139 3 Si 0.714 3.286 4 H -0.198 1.198 5 H -0.210 1.210 6 H -0.211 1.211 7 C -0.544 4.544 8 H 0.074 0.926 9 C 0.027 3.973 10 H 0.043 0.957 11 C -0.185 4.185 12 C -0.058 4.058 13 N -0.310 5.310 14 C 0.021 3.979 15 H 0.115 0.885 16 C -0.061 4.061 17 C -0.114 4.114 18 C -0.163 4.163 19 C 0.040 3.960 20 O -0.312 6.312 21 C -0.162 4.162 22 C -0.119 4.119 23 C -0.169 4.169 24 H 0.069 0.931 25 H 0.032 0.968 26 H 0.115 0.885 27 H 0.067 0.933 28 H 0.099 0.901 29 H 0.139 0.861 30 H 0.141 0.859 31 H 0.140 0.860 32 H 0.239 0.761 33 H 0.141 0.859 34 H 0.145 0.855 35 H 0.070 0.930 36 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges 7.538 -10.602 -2.641 13.274 hybrid contribution -0.288 0.514 1.273 1.403 sum 7.249 -10.087 -1.367 12.497 Atomic orbital electron populations 1.69875 1.05883 1.26252 1.50839 1.24940 0.94780 0.98947 0.95204 0.86626 0.80225 0.84134 0.77585 1.19800 1.21024 1.21136 1.21148 0.92717 0.90352 1.50149 0.92641 1.18707 0.92528 0.91926 0.94149 0.95677 1.22188 0.99415 1.00153 0.96762 1.21888 0.93515 0.93998 0.96434 1.60922 1.23779 1.05507 1.40799 1.20481 0.92334 0.95358 0.89692 0.88505 1.20219 0.94468 0.95151 0.96275 1.20827 0.99459 0.91947 0.99121 1.21324 0.92604 0.99701 1.02657 1.18412 0.88575 0.87343 1.01719 1.84821 1.62641 1.44354 1.39425 1.21329 1.00083 0.92775 1.02005 1.20964 0.92651 0.98856 0.99408 1.22239 0.98854 0.98935 0.96885 0.93100 0.96791 0.88543 0.93324 0.90138 0.86082 0.85922 0.85958 0.76119 0.85874 0.85519 0.92951 0.94677 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.60 11.32 55.43 0.63 -23.97 16 2 C 0.06 1.66 5.30 -17.82 -0.09 1.56 16 3 Si 0.89 20.74 29.54 -169.99 -5.02 15.72 16 4 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 5 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 6 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 7 C -0.51 -13.07 6.74 -34.44 -0.23 -13.31 16 8 H 0.06 1.43 6.88 -52.49 -0.36 1.07 16 9 C 0.05 1.08 2.60 -91.65 -0.24 0.84 16 10 H 0.03 0.67 8.14 -51.93 -0.42 0.25 16 11 C -0.15 -3.29 5.39 -26.65 -0.14 -3.44 16 12 C 0.07 1.44 6.35 -3.84 -0.02 1.41 16 13 N -0.68 -12.49 6.36 -107.99 -0.69 -13.18 16 14 C 0.13 2.43 2.45 -68.87 -0.17 2.26 16 15 H 0.10 2.00 6.65 -51.93 -0.35 1.66 16 16 C -0.06 -0.98 4.96 -104.60 -0.52 -1.50 16 17 C -0.10 -1.39 9.27 -39.61 -0.37 -1.75 16 18 C -0.14 -1.92 9.99 -39.44 -0.39 -2.32 16 19 C 0.08 1.12 6.70 -39.22 -0.26 0.85 16 20 O -0.50 -5.81 13.50 -19.43 -0.26 -6.07 16 21 C -0.14 -1.94 9.99 -39.43 -0.39 -2.33 16 22 C -0.10 -1.50 9.66 -39.60 -0.38 -1.89 16 23 C -0.13 -2.61 4.80 -26.65 -0.13 -2.74 16 24 H 0.26 6.88 8.31 -40.82 -0.34 6.54 16 25 H 0.01 0.29 8.14 -51.93 -0.42 -0.14 16 26 H 0.10 2.47 6.03 -51.93 -0.31 2.15 16 27 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 28 H 0.08 1.83 7.31 -51.93 -0.38 1.45 16 29 H 0.32 5.38 7.06 -39.29 -0.28 5.10 16 30 H 0.12 1.65 6.63 -52.48 -0.35 1.31 16 31 H 0.12 1.38 8.06 -52.48 -0.42 0.96 16 32 H 0.38 2.52 9.06 45.56 0.41 2.93 16 33 H 0.12 1.42 8.06 -52.48 -0.42 1.00 16 34 H 0.13 1.80 8.03 -52.49 -0.42 1.37 16 35 H 0.05 1.05 8.14 -51.92 -0.42 0.63 16 36 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 LS Contribution 289.03 15.07 4.36 4.36 Total: -1.00 -28.48 289.03 -8.46 -36.94 By element: Atomic # 1 Polarization: 12.66 SS G_CDS: -4.13 Total: 8.54 kcal Atomic # 6 Polarization: -18.98 SS G_CDS: -3.35 Total: -22.33 kcal Atomic # 7 Polarization: -37.09 SS G_CDS: -0.06 Total: -37.15 kcal Atomic # 8 Polarization: -5.81 SS G_CDS: -0.26 Total: -6.07 kcal Atomic # 14 Polarization: 20.74 SS G_CDS: -5.02 Total: 15.72 kcal Total LS contribution 4.36 Total: 4.36 kcal Total: -28.48 -8.46 -36.94 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259767862.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.922 kcal (2) G-P(sol) polarization free energy of solvation -28.477 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.555 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.463 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.940 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.018 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds