Wall clock time and date at job start Mon Mar 30 2020 06:39:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86798 * 119.99798 * 2 1 4 4 H 1.48501 * 109.47109 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.47309 * 299.99759 * 3 2 1 6 6 H 1.48504 * 109.47283 * 59.99930 * 3 2 1 7 7 C 1.37873 * 120.00115 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00448 * 180.02562 * 7 2 1 9 9 C 1.50704 * 119.99713 * 359.97438 * 7 2 1 10 10 H 1.09002 * 109.52452 * 300.00191 * 9 7 2 11 11 C 1.53117 * 109.52474 * 60.13050 * 9 7 2 12 12 C 1.53032 * 109.28074 * 62.30760 * 11 9 7 13 13 N 1.46845 * 109.52093 * 59.18302 * 12 11 9 14 14 C 1.46852 * 111.19842 * 298.25529 * 13 12 11 15 15 H 1.08994 * 109.46352 * 301.73527 * 14 13 12 16 16 C 1.50699 * 109.46209 * 181.75606 * 14 13 12 17 17 C 1.38266 * 119.94950 * 319.73016 * 16 14 13 18 18 C 1.38138 * 120.05905 * 179.72613 * 17 16 14 19 19 C 1.38729 * 119.94402 * 0.56717 * 18 17 16 20 20 O 1.35901 * 120.05847 * 179.68129 * 19 18 17 21 21 C 1.38731 * 119.88822 * 359.70445 * 19 18 17 22 22 C 1.38147 * 119.94619 * 0.02562 * 21 19 18 23 23 C 1.53038 * 109.51870 * 61.74428 * 14 13 12 24 24 H 0.97006 * 120.00305 * 359.97438 * 1 2 3 25 25 H 1.08998 * 109.50586 * 182.25710 * 11 9 7 26 26 H 1.09007 * 109.49947 * 302.33184 * 11 9 7 27 27 H 1.09004 * 109.46732 * 179.19580 * 12 11 9 28 28 H 1.08999 * 109.46647 * 299.17278 * 12 11 9 29 29 H 1.00904 * 111.00323 * 62.35693 * 13 12 11 30 30 H 1.08010 * 119.96612 * 359.97438 * 17 16 14 31 31 H 1.08003 * 120.03346 * 180.25044 * 18 17 16 32 32 H 0.96693 * 114.00292 * 270.02231 * 20 19 18 33 33 H 1.08005 * 120.03291 * 179.97438 * 21 19 18 34 34 H 1.07998 * 119.97677 * 179.97438 * 22 21 19 35 35 H 1.09008 * 109.50069 * 180.87836 * 23 14 13 36 36 H 1.08998 * 109.50473 * 60.76141 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8904 2.3965 -1.2125 6 1 1.8903 2.3965 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4991 -0.0005 10 1 0.6243 -2.5579 0.8894 11 6 0.3722 -2.5826 -1.2516 12 6 1.2620 -2.5608 -2.4965 13 7 2.1932 -3.6955 -2.4540 14 6 3.0795 -3.6116 -1.2862 15 1 3.6352 -2.6745 -1.3186 16 6 4.0448 -4.7687 -1.3043 17 6 3.6078 -6.0264 -1.6768 18 6 4.4920 -7.0875 -1.6997 19 6 5.8169 -6.8928 -1.3372 20 8 6.6872 -7.9364 -1.3526 21 6 6.2517 -5.6310 -0.9584 22 6 5.3648 -4.5720 -0.9425 23 6 2.2439 -3.6647 -0.0052 24 1 -0.4851 0.8401 0.0004 25 1 -0.2028 -3.5084 -1.2314 26 1 -0.3088 -1.7318 -1.2754 27 1 0.6402 -2.6345 -3.3888 28 1 1.8264 -1.6287 -2.5233 29 1 1.6950 -4.5729 -2.4676 30 1 2.5750 -6.1785 -1.9541 31 1 4.1511 -8.0689 -1.9947 32 1 6.7357 -8.4206 -0.5170 33 1 7.2825 -5.4769 -0.6753 34 1 5.7027 -3.5896 -0.6473 35 1 2.9007 -3.5867 0.8613 36 1 1.6984 -4.6076 0.0347 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259767862.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:39:02 Heat of formation + Delta-G solvation = -47.994027 kcal Electronic energy + Delta-G solvation = -17974.148026 eV Core-core repulsion = 15228.668318 eV Total energy + Delta-G solvation = -2745.479708 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 247.131 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.97713 -39.57367 -37.44992 -34.93032 -32.53844 -32.24044 -31.80739 -29.06375 -27.07338 -24.64987 -23.89437 -23.33672 -21.83920 -20.84874 -19.28838 -18.03717 -17.43470 -16.70771 -16.48935 -16.19171 -15.45952 -15.29487 -15.08253 -14.78131 -14.28998 -14.20402 -13.99199 -13.67241 -13.16778 -12.91926 -12.83085 -12.65306 -12.46263 -12.36973 -11.95255 -11.75152 -11.71625 -11.29332 -10.93290 -10.72172 -10.50784 -9.86812 -9.46768 -8.95509 -8.07304 -6.18750 0.34558 0.47366 1.38556 1.42350 1.51513 2.43403 2.73934 3.21002 3.37177 3.50219 3.96364 3.99864 4.12794 4.32277 4.47031 4.52788 4.58842 4.65497 4.75139 4.76777 4.91777 5.03934 5.04923 5.17587 5.23965 5.40563 5.44581 5.50953 5.53270 5.59522 5.78054 5.81989 5.96133 6.00975 6.32927 6.41190 6.69169 6.90750 6.92220 7.48405 8.97473 Molecular weight = 247.13amu Principal moments of inertia in cm(-1) A = 0.034911 B = 0.005800 C = 0.005295 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 801.845089 B = 4826.067203 C = 5286.478593 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C 0.017 3.983 3 Si 0.943 3.057 4 H -0.268 1.268 5 H -0.282 1.282 6 H -0.284 1.284 7 C -0.511 4.511 8 H 0.051 0.949 9 C 0.039 3.961 10 H -0.012 1.012 11 C -0.139 4.139 12 C 0.081 3.919 13 N -0.672 5.672 14 C 0.143 3.857 15 H 0.070 0.930 16 C -0.082 4.082 17 C -0.097 4.097 18 C -0.145 4.145 19 C 0.091 3.909 20 O -0.508 6.508 21 C -0.147 4.147 22 C -0.110 4.110 23 C -0.119 4.119 24 H 0.258 0.742 25 H 0.028 0.972 26 H 0.064 0.936 27 H 0.069 0.931 28 H 0.053 0.947 29 H 0.337 0.663 30 H 0.133 0.867 31 H 0.145 0.855 32 H 0.408 0.592 33 H 0.142 0.858 34 H 0.126 0.874 35 H 0.046 0.954 36 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.540 -12.931 -2.277 15.663 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.557 5.557 2 C -0.182 4.182 3 Si 0.770 3.230 4 H -0.192 1.192 5 H -0.208 1.208 6 H -0.211 1.211 7 C -0.549 4.549 8 H 0.070 0.930 9 C 0.020 3.980 10 H 0.006 0.994 11 C -0.178 4.178 12 C -0.048 4.048 13 N -0.302 5.302 14 C 0.033 3.967 15 H 0.088 0.912 16 C -0.083 4.083 17 C -0.115 4.115 18 C -0.164 4.164 19 C 0.047 3.953 20 O -0.321 6.321 21 C -0.165 4.165 22 C -0.129 4.129 23 C -0.159 4.159 24 H 0.068 0.932 25 H 0.047 0.953 26 H 0.083 0.917 27 H 0.087 0.913 28 H 0.071 0.929 29 H 0.155 0.845 30 H 0.150 0.850 31 H 0.163 0.837 32 H 0.267 0.733 33 H 0.160 0.840 34 H 0.144 0.856 35 H 0.065 0.935 36 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 8.954 -12.338 -3.291 15.596 hybrid contribution -0.674 0.936 1.514 1.903 sum 8.280 -11.402 -1.777 14.203 Atomic orbital electron populations 1.70007 1.07054 1.26778 1.51843 1.25610 0.95477 1.01887 0.95208 0.85726 0.79284 0.80595 0.77412 1.19246 1.20793 1.21056 1.21379 0.92631 0.91436 1.49420 0.93040 1.18703 0.93045 0.92964 0.93240 0.99406 1.22054 0.99100 0.99430 0.97262 1.21690 0.93247 0.93768 0.96102 1.60868 1.23185 1.05476 1.40650 1.20216 0.92283 0.95613 0.88611 0.91172 1.19992 0.94442 0.94869 0.98964 1.20938 1.00276 0.91535 0.98788 1.21554 0.92443 1.00308 1.02062 1.18522 0.88774 0.87718 1.00302 1.84761 1.62052 1.43951 1.41358 1.21515 1.00744 0.92510 1.01733 1.21049 0.92653 0.99511 0.99647 1.22093 0.98153 0.97765 0.97857 0.93235 0.95319 0.91722 0.91262 0.92878 0.84461 0.84961 0.83680 0.73298 0.84025 0.85636 0.93517 0.93203 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -52.08 11.32 21.45 0.24 -51.84 16 2 C 0.02 0.89 5.30 84.65 0.45 1.34 16 3 Si 0.94 43.20 29.54 68.60 2.03 45.23 16 4 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 5 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 6 H -0.28 -12.93 7.11 99.48 0.71 -12.22 16 7 C -0.51 -27.06 6.74 25.60 0.17 -26.89 16 8 H 0.05 2.71 6.88 -2.91 -0.02 2.69 16 9 C 0.04 1.91 2.60 -11.46 -0.03 1.88 16 10 H -0.01 -0.68 8.14 -2.39 -0.02 -0.70 16 11 C -0.14 -6.35 5.39 30.64 0.17 -6.18 16 12 C 0.08 3.30 6.35 86.32 0.55 3.84 16 13 N -0.67 -23.86 6.36 -495.57 -3.15 -27.01 16 14 C 0.14 5.23 2.45 44.19 0.11 5.34 16 15 H 0.07 2.94 6.65 -2.39 -0.02 2.93 16 16 C -0.08 -2.54 4.96 -19.85 -0.10 -2.64 16 17 C -0.10 -2.58 9.27 22.25 0.21 -2.38 16 18 C -0.15 -3.39 9.99 22.36 0.22 -3.17 16 19 C 0.09 2.14 6.70 22.50 0.15 2.29 16 20 O -0.51 -9.83 13.50 -92.44 -1.25 -11.07 16 21 C -0.15 -3.61 9.99 22.37 0.22 -3.38 16 22 C -0.11 -3.16 9.66 22.26 0.22 -2.94 16 23 C -0.12 -4.80 4.80 30.65 0.15 -4.65 16 24 H 0.26 14.07 8.31 -92.70 -0.77 13.29 16 25 H 0.03 1.19 8.14 -2.39 -0.02 1.17 16 26 H 0.06 3.40 6.03 -2.38 -0.01 3.38 16 27 H 0.07 2.51 8.14 -2.38 -0.02 2.49 16 28 H 0.05 2.45 7.31 -2.39 -0.02 2.43 16 29 H 0.34 10.50 7.06 -89.69 -0.63 9.86 16 30 H 0.13 3.18 6.63 -2.91 -0.02 3.16 16 31 H 0.15 2.69 8.06 -2.91 -0.02 2.67 16 32 H 0.41 3.74 9.06 -74.06 -0.67 3.07 16 33 H 0.14 2.88 8.06 -2.91 -0.02 2.86 16 34 H 0.13 3.52 8.03 -2.91 -0.02 3.49 16 35 H 0.05 1.89 8.14 -2.38 -0.02 1.88 16 36 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 Total: -1.00 -61.37 289.03 0.14 -61.23 By element: Atomic # 1 Polarization: 21.21 SS G_CDS: -0.21 Total: 21.00 kcal Atomic # 6 Polarization: -40.02 SS G_CDS: 2.48 Total: -37.54 kcal Atomic # 7 Polarization: -75.94 SS G_CDS: -2.91 Total: -78.85 kcal Atomic # 8 Polarization: -9.83 SS G_CDS: -1.25 Total: -11.07 kcal Atomic # 14 Polarization: 43.20 SS G_CDS: 2.03 Total: 45.23 kcal Total: -61.37 0.14 -61.23 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259767862.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.235 kcal (2) G-P(sol) polarization free energy of solvation -61.372 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.137 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.143 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.229 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.994 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds