Wall clock time and date at job start Mon Mar 30 2020 06:39:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86802 * 119.99756 * 2 1 4 4 H 1.48504 * 109.46862 * 239.99838 * 3 2 1 5 5 H 1.48495 * 109.47443 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.46890 * 120.00279 * 3 2 1 7 7 C 1.37876 * 119.99951 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99815 * 180.02562 * 7 2 1 9 9 C 1.50695 * 120.00275 * 359.97438 * 7 2 1 10 10 H 1.08998 * 109.52625 * 300.13094 * 9 7 2 11 11 C 1.53126 * 109.52106 * 60.31771 * 9 7 2 12 12 C 1.53041 * 109.27631 * 177.55981 * 11 9 7 13 13 N 1.46847 * 109.51414 * 300.81412 * 12 11 9 14 14 C 1.46846 * 111.19656 * 61.76154 * 13 12 11 15 15 H 1.09004 * 109.46319 * 58.25161 * 14 13 12 16 16 C 1.50696 * 109.46181 * 178.22534 * 14 13 12 17 17 C 1.38266 * 119.94521 * 220.01688 * 16 14 13 18 18 C 1.38149 * 120.05411 * 179.72456 * 17 16 14 19 19 C 1.38726 * 119.94477 * 0.28574 * 18 17 16 20 20 O 1.35899 * 120.05788 * 179.97438 * 19 18 17 21 21 C 1.38729 * 119.89044 * 359.97438 * 19 18 17 22 22 C 1.38144 * 119.94142 * 0.02562 * 21 19 18 23 23 C 1.53038 * 109.51638 * 298.23988 * 14 13 12 24 24 H 0.97003 * 120.00248 * 359.97438 * 1 2 3 25 25 H 1.08992 * 109.50110 * 297.50296 * 11 9 7 26 26 H 1.08996 * 109.50197 * 57.58145 * 11 9 7 27 27 H 1.09003 * 109.46316 * 60.83810 * 12 11 9 28 28 H 1.08998 * 109.45656 * 180.81871 * 12 11 9 29 29 H 1.00901 * 111.00936 * 297.65618 * 13 12 11 30 30 H 1.08002 * 119.97497 * 0.02562 * 17 16 14 31 31 H 1.08000 * 120.02723 * 180.30253 * 18 17 16 32 32 H 0.96706 * 114.00487 * 89.99080 * 20 19 18 33 33 H 1.08006 * 120.02919 * 180.02562 * 21 19 18 34 34 H 1.08007 * 119.97030 * 180.02562 * 22 21 19 35 35 H 1.09002 * 109.50512 * 179.12561 * 23 14 13 36 36 H 1.08999 * 109.50190 * 299.24237 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2842 2.7465 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 1 0.6227 -2.5570 0.8882 11 6 0.3759 -2.5847 -1.2541 12 6 -0.3398 -3.9372 -1.2793 13 7 0.6542 -5.0182 -1.2798 14 6 1.4752 -4.9850 -0.0627 15 1 0.8311 -5.0712 0.8124 16 6 2.4503 -6.1339 -0.0835 17 6 2.7152 -6.8353 1.0782 18 6 3.6043 -7.8925 1.0606 19 6 4.2361 -8.2463 -0.1227 20 8 5.1115 -9.2856 -0.1425 21 6 3.9727 -7.5375 -1.2858 22 6 3.0827 -6.4812 -1.2629 23 6 2.2451 -3.6638 -0.0011 24 1 -0.4851 0.8400 0.0004 25 1 -0.3621 -1.7827 -1.2380 26 1 1.0008 -2.4864 -2.1416 27 1 -0.9753 -4.0283 -0.3984 28 1 -0.9525 -4.0071 -2.1780 29 1 1.2313 -4.9785 -2.1065 30 1 2.2229 -6.5597 1.9992 31 1 3.8072 -8.4432 1.9672 32 1 4.7030 -10.1405 -0.3359 33 1 4.4629 -7.8114 -2.2084 34 1 2.8770 -5.9293 -2.1682 35 1 2.8425 -3.6329 0.9100 36 1 2.8996 -3.5833 -0.8690 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259767865.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:39:05 Heat of formation + Delta-G solvation = -31.689072 kcal Electronic energy + Delta-G solvation = -17711.468619 eV Core-core repulsion = 14966.695947 eV Total energy + Delta-G solvation = -2744.772672 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 247.131 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.84240 -38.17966 -36.32371 -33.27349 -31.24690 -30.90806 -30.31283 -27.79469 -25.27366 -23.16215 -22.66164 -21.67725 -20.56064 -19.19729 -18.36846 -16.65700 -15.82250 -15.58549 -15.19666 -14.62369 -14.36597 -13.74516 -13.46200 -13.36581 -13.15882 -12.83002 -12.54138 -12.01523 -11.82816 -11.71756 -11.22936 -11.09050 -10.88320 -10.67558 -10.42205 -10.29017 -10.10158 -9.54025 -9.34033 -8.92620 -8.86038 -8.43396 -8.34001 -7.58001 -6.00931 -4.08517 1.36766 1.48305 3.29417 3.34219 3.37059 3.74487 4.25756 4.40924 4.78248 4.99529 5.05792 5.21539 5.27888 5.51463 5.62517 5.75455 5.89358 6.02690 6.07919 6.14234 6.31048 6.40504 6.45679 6.50232 6.51837 6.68627 6.82677 6.91236 6.98894 7.07126 7.31863 7.51789 7.64938 7.73210 7.91028 7.93564 8.10840 8.41033 8.94780 9.56515 11.03624 Molecular weight = 247.13amu Principal moments of inertia in cm(-1) A = 0.034695 B = 0.005138 C = 0.004786 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 806.831074 B = 5447.872685 C = 5849.108832 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.063 3.937 3 Si 0.890 3.110 4 H -0.278 1.278 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.515 4.515 8 H 0.053 0.947 9 C 0.051 3.949 10 H 0.026 0.974 11 C -0.145 4.145 12 C 0.054 3.946 13 N -0.682 5.682 14 C 0.121 3.879 15 H 0.083 0.917 16 C -0.060 4.060 17 C -0.101 4.101 18 C -0.143 4.143 19 C 0.086 3.914 20 O -0.502 6.502 21 C -0.143 4.143 22 C -0.093 4.093 23 C -0.131 4.131 24 H 0.260 0.740 25 H 0.094 0.906 26 H 0.034 0.966 27 H 0.063 0.937 28 H 0.058 0.942 29 H 0.330 0.670 30 H 0.126 0.874 31 H 0.124 0.876 32 H 0.384 0.616 33 H 0.124 0.876 34 H 0.124 0.876 35 H 0.052 0.948 36 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.391 -14.594 -1.436 15.051 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.139 4.139 3 Si 0.718 3.282 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.203 1.203 7 C -0.553 4.553 8 H 0.071 0.929 9 C 0.033 3.967 10 H 0.044 0.956 11 C -0.184 4.184 12 C -0.075 4.075 13 N -0.311 5.311 14 C 0.011 3.989 15 H 0.101 0.899 16 C -0.061 4.061 17 C -0.120 4.120 18 C -0.162 4.162 19 C 0.042 3.958 20 O -0.312 6.312 21 C -0.162 4.162 22 C -0.111 4.111 23 C -0.170 4.170 24 H 0.070 0.930 25 H 0.112 0.888 26 H 0.053 0.947 27 H 0.082 0.918 28 H 0.076 0.924 29 H 0.148 0.852 30 H 0.144 0.856 31 H 0.142 0.858 32 H 0.239 0.761 33 H 0.142 0.858 34 H 0.142 0.858 35 H 0.070 0.930 36 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 3.186 -14.494 -1.055 14.878 hybrid contribution 0.790 1.398 -0.298 1.633 sum 3.976 -13.096 -1.352 13.753 Atomic orbital electron populations 1.69865 1.05848 1.26511 1.50662 1.24956 0.94847 0.99003 0.95061 0.86690 0.79641 0.83249 0.78611 1.20347 1.21271 1.20303 1.21149 0.92801 0.90661 1.50674 0.92909 1.18658 0.92487 0.91414 0.94159 0.95635 1.22271 1.00717 0.96501 0.98925 1.22121 0.94176 0.90370 1.00832 1.60949 1.18540 1.47894 1.03745 1.20589 0.92230 0.91634 0.94406 0.89897 1.20062 0.96735 0.96153 0.93111 1.20923 0.97904 0.94976 0.98170 1.21324 0.97610 0.99406 0.97856 1.18421 0.92802 0.91667 0.92959 1.84835 1.34977 1.17696 1.93674 1.21347 0.99265 0.97847 0.97721 1.20829 0.95625 0.96519 0.98131 1.22333 0.99203 0.94575 1.00902 0.92973 0.88783 0.94743 0.91820 0.92384 0.85220 0.85624 0.85813 0.76075 0.85836 0.85791 0.92963 0.93206 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.07 11.37 55.43 0.63 -24.44 16 2 C 0.06 1.72 5.31 -17.82 -0.09 1.62 16 3 Si 0.89 21.23 29.54 -169.99 -5.02 16.21 16 4 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 5 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 6 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 7 C -0.51 -14.01 8.56 -34.44 -0.29 -14.31 16 8 H 0.05 1.44 7.74 -52.48 -0.41 1.03 16 9 C 0.05 1.24 2.16 -91.65 -0.20 1.04 16 10 H 0.03 0.68 8.14 -51.93 -0.42 0.26 16 11 C -0.14 -3.27 5.11 -26.65 -0.14 -3.41 16 12 C 0.05 1.01 6.55 -3.83 -0.03 0.98 16 13 N -0.68 -11.59 6.35 -107.99 -0.69 -12.28 16 14 C 0.12 2.10 2.66 -68.88 -0.18 1.92 16 15 H 0.08 1.47 8.00 -51.93 -0.42 1.06 16 16 C -0.06 -0.92 4.96 -104.60 -0.52 -1.44 16 17 C -0.10 -1.41 9.66 -39.60 -0.38 -1.80 16 18 C -0.14 -1.84 9.99 -39.43 -0.39 -2.24 16 19 C 0.09 1.11 6.70 -39.22 -0.26 0.84 16 20 O -0.50 -5.63 13.50 -19.42 -0.26 -5.89 16 21 C -0.14 -1.87 9.99 -39.43 -0.39 -2.26 16 22 C -0.09 -1.32 9.27 -39.61 -0.37 -1.68 16 23 C -0.13 -2.67 4.56 -26.65 -0.12 -2.79 16 24 H 0.26 7.04 8.31 -40.82 -0.34 6.71 16 25 H 0.09 2.41 6.17 -51.93 -0.32 2.08 16 26 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 27 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 28 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 29 H 0.33 5.30 7.06 -39.29 -0.28 5.03 16 30 H 0.13 1.58 8.03 -52.49 -0.42 1.16 16 31 H 0.12 1.34 8.06 -52.49 -0.42 0.92 16 32 H 0.38 2.35 9.06 45.56 0.41 2.76 16 33 H 0.12 1.38 8.06 -52.48 -0.42 0.95 16 34 H 0.12 1.66 6.63 -52.48 -0.35 1.31 16 35 H 0.05 1.07 8.14 -51.93 -0.42 0.65 16 36 H 0.05 1.03 8.14 -51.93 -0.42 0.60 16 LS Contribution 293.55 15.07 4.42 4.42 Total: -1.00 -29.40 293.55 -8.58 -37.98 By element: Atomic # 1 Polarization: 11.80 SS G_CDS: -4.29 Total: 7.51 kcal Atomic # 6 Polarization: -20.15 SS G_CDS: -3.37 Total: -23.52 kcal Atomic # 7 Polarization: -36.66 SS G_CDS: -0.06 Total: -36.72 kcal Atomic # 8 Polarization: -5.63 SS G_CDS: -0.26 Total: -5.89 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.02 Total: 16.21 kcal Total LS contribution 4.42 Total: 4.42 kcal Total: -29.40 -8.58 -37.98 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259767865.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.293 kcal (2) G-P(sol) polarization free energy of solvation -29.401 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.108 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.581 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.982 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.689 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds