Wall clock time and date at job start Mon Mar 30 2020 06:39:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86802 * 119.99756 * 2 1 4 4 H 1.48504 * 109.46862 * 239.99838 * 3 2 1 5 5 H 1.48495 * 109.47443 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.46890 * 120.00279 * 3 2 1 7 7 C 1.37876 * 119.99951 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99815 * 180.02562 * 7 2 1 9 9 C 1.50695 * 120.00275 * 359.97438 * 7 2 1 10 10 H 1.08998 * 109.52625 * 300.13094 * 9 7 2 11 11 C 1.53126 * 109.52106 * 60.31771 * 9 7 2 12 12 C 1.53041 * 109.27631 * 177.55981 * 11 9 7 13 13 N 1.46847 * 109.51414 * 300.81412 * 12 11 9 14 14 C 1.46846 * 111.19656 * 61.76154 * 13 12 11 15 15 H 1.09004 * 109.46319 * 58.25161 * 14 13 12 16 16 C 1.50696 * 109.46181 * 178.22534 * 14 13 12 17 17 C 1.38266 * 119.94521 * 220.01688 * 16 14 13 18 18 C 1.38149 * 120.05411 * 179.72456 * 17 16 14 19 19 C 1.38726 * 119.94477 * 0.28574 * 18 17 16 20 20 O 1.35899 * 120.05788 * 179.97438 * 19 18 17 21 21 C 1.38729 * 119.89044 * 359.97438 * 19 18 17 22 22 C 1.38144 * 119.94142 * 0.02562 * 21 19 18 23 23 C 1.53038 * 109.51638 * 298.23988 * 14 13 12 24 24 H 0.97003 * 120.00248 * 359.97438 * 1 2 3 25 25 H 1.08992 * 109.50110 * 297.50296 * 11 9 7 26 26 H 1.08996 * 109.50197 * 57.58145 * 11 9 7 27 27 H 1.09003 * 109.46316 * 60.83810 * 12 11 9 28 28 H 1.08998 * 109.45656 * 180.81871 * 12 11 9 29 29 H 1.00901 * 111.00936 * 297.65618 * 13 12 11 30 30 H 1.08002 * 119.97497 * 0.02562 * 17 16 14 31 31 H 1.08000 * 120.02723 * 180.30253 * 18 17 16 32 32 H 0.96706 * 114.00487 * 89.99080 * 20 19 18 33 33 H 1.08006 * 120.02919 * 180.02562 * 21 19 18 34 34 H 1.08007 * 119.97030 * 180.02562 * 22 21 19 35 35 H 1.09002 * 109.50512 * 179.12561 * 23 14 13 36 36 H 1.08999 * 109.50190 * 299.24237 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2842 2.7465 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 1 0.6227 -2.5570 0.8882 11 6 0.3759 -2.5847 -1.2541 12 6 -0.3398 -3.9372 -1.2793 13 7 0.6542 -5.0182 -1.2798 14 6 1.4752 -4.9850 -0.0627 15 1 0.8311 -5.0712 0.8124 16 6 2.4503 -6.1339 -0.0835 17 6 2.7152 -6.8353 1.0782 18 6 3.6043 -7.8925 1.0606 19 6 4.2361 -8.2463 -0.1227 20 8 5.1115 -9.2856 -0.1425 21 6 3.9727 -7.5375 -1.2858 22 6 3.0827 -6.4812 -1.2629 23 6 2.2451 -3.6638 -0.0011 24 1 -0.4851 0.8400 0.0004 25 1 -0.3621 -1.7827 -1.2380 26 1 1.0008 -2.4864 -2.1416 27 1 -0.9753 -4.0283 -0.3984 28 1 -0.9525 -4.0071 -2.1780 29 1 1.2313 -4.9785 -2.1065 30 1 2.2229 -6.5597 1.9992 31 1 3.8072 -8.4432 1.9672 32 1 4.7030 -10.1405 -0.3359 33 1 4.4629 -7.8114 -2.2084 34 1 2.8770 -5.9293 -2.1682 35 1 2.8425 -3.6329 0.9100 36 1 2.8996 -3.5833 -0.8690 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259767865.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:39:05 Heat of formation + Delta-G solvation = -51.379914 kcal Electronic energy + Delta-G solvation = -17712.322478 eV Core-core repulsion = 14966.695947 eV Total energy + Delta-G solvation = -2745.626531 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 247.131 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.97123 -39.52294 -37.44106 -35.16859 -32.62119 -32.26792 -31.83476 -29.10146 -27.22355 -24.47773 -23.85662 -23.25263 -21.87185 -20.89848 -19.29594 -18.50650 -17.28368 -16.68705 -16.56767 -16.15417 -15.68351 -15.19592 -15.04186 -14.79897 -14.42441 -14.27131 -14.08043 -13.52830 -13.16853 -13.03955 -12.87282 -12.66723 -12.56544 -12.36614 -12.06473 -11.94457 -11.41369 -11.27323 -11.20697 -10.78436 -10.49349 -9.87661 -9.49619 -9.09771 -8.08868 -6.25731 0.33057 0.46525 1.38875 1.39267 1.47247 2.40240 2.72552 3.14892 3.36363 3.42218 3.90454 3.96292 4.12113 4.24050 4.42203 4.47128 4.54029 4.63875 4.70823 4.72230 4.84830 4.98315 5.02459 5.13725 5.19806 5.27451 5.41807 5.45512 5.50604 5.56443 5.71803 5.93528 5.95598 5.97407 6.26241 6.35205 6.54174 6.85470 6.92055 7.42471 8.92206 Molecular weight = 247.13amu Principal moments of inertia in cm(-1) A = 0.034695 B = 0.005138 C = 0.004786 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 806.831074 B = 5447.872685 C = 5849.108832 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.914 5.914 2 C 0.016 3.984 3 Si 0.950 3.050 4 H -0.272 1.272 5 H -0.282 1.282 6 H -0.274 1.274 7 C -0.538 4.538 8 H 0.046 0.954 9 C 0.047 3.953 10 H -0.007 1.007 11 C -0.135 4.135 12 C 0.066 3.934 13 N -0.669 5.669 14 C 0.133 3.867 15 H 0.075 0.925 16 C -0.081 4.081 17 C -0.107 4.107 18 C -0.147 4.147 19 C 0.092 3.908 20 O -0.509 6.509 21 C -0.148 4.148 22 C -0.098 4.098 23 C -0.119 4.119 24 H 0.261 0.739 25 H 0.062 0.938 26 H 0.028 0.972 27 H 0.057 0.943 28 H 0.080 0.920 29 H 0.339 0.661 30 H 0.133 0.867 31 H 0.144 0.856 32 H 0.409 0.591 33 H 0.143 0.857 34 H 0.129 0.871 35 H 0.044 0.956 36 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.436 -16.087 -1.918 16.797 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.553 5.553 2 C -0.183 4.183 3 Si 0.776 3.224 4 H -0.198 1.198 5 H -0.207 1.207 6 H -0.199 1.199 7 C -0.576 4.576 8 H 0.064 0.936 9 C 0.028 3.972 10 H 0.011 0.989 11 C -0.174 4.174 12 C -0.064 4.064 13 N -0.298 5.298 14 C 0.023 3.977 15 H 0.094 0.906 16 C -0.082 4.082 17 C -0.126 4.126 18 C -0.165 4.165 19 C 0.047 3.953 20 O -0.322 6.322 21 C -0.166 4.166 22 C -0.117 4.117 23 C -0.158 4.158 24 H 0.070 0.930 25 H 0.080 0.920 26 H 0.047 0.953 27 H 0.075 0.925 28 H 0.099 0.901 29 H 0.158 0.842 30 H 0.151 0.849 31 H 0.162 0.838 32 H 0.268 0.732 33 H 0.161 0.839 34 H 0.147 0.853 35 H 0.063 0.937 36 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 4.235 -16.020 -1.545 16.643 hybrid contribution 0.519 1.783 -0.127 1.861 sum 4.755 -14.238 -1.672 15.104 Atomic orbital electron populations 1.69999 1.07011 1.27178 1.51090 1.25694 0.95679 1.02177 0.94758 0.85733 0.78514 0.79416 0.78721 1.19773 1.20725 1.19898 1.21525 0.92781 0.92416 1.50905 0.93577 1.18631 0.92962 0.92096 0.93492 0.98881 1.22088 0.99732 0.97950 0.97673 1.21971 0.94305 0.88451 1.01656 1.60944 1.18444 1.46342 1.04119 1.20388 0.92167 0.90955 0.94223 0.90649 1.19879 0.97503 0.96403 0.94394 1.21076 0.98237 0.95193 0.98047 1.21540 0.97098 0.99032 0.98833 1.18543 0.92009 0.91888 0.92828 1.84773 1.35057 1.18673 1.93681 1.21551 0.98983 0.97323 0.98749 1.20932 0.95862 0.97005 0.97879 1.22155 0.98300 0.95056 1.00293 0.92997 0.91968 0.95329 0.92461 0.90126 0.84218 0.84883 0.83793 0.73245 0.83934 0.85323 0.93750 0.93511 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -52.66 11.37 21.45 0.24 -52.41 16 2 C 0.02 0.88 5.31 84.65 0.45 1.33 16 3 Si 0.95 43.92 29.54 68.60 2.03 45.94 16 4 H -0.27 -12.28 7.11 99.48 0.71 -11.57 16 5 H -0.28 -12.70 7.11 99.48 0.71 -12.00 16 6 H -0.27 -12.40 7.11 99.48 0.71 -11.69 16 7 C -0.54 -30.02 8.56 25.60 0.22 -29.80 16 8 H 0.05 2.56 7.74 -2.91 -0.02 2.54 16 9 C 0.05 2.33 2.16 -11.46 -0.02 2.31 16 10 H -0.01 -0.39 8.14 -2.39 -0.02 -0.41 16 11 C -0.13 -6.22 5.11 30.65 0.16 -6.07 16 12 C 0.07 2.42 6.55 86.33 0.57 2.99 16 13 N -0.67 -22.04 6.35 -495.56 -3.15 -25.19 16 14 C 0.13 4.55 2.66 44.19 0.12 4.67 16 15 H 0.08 2.69 8.00 -2.38 -0.02 2.67 16 16 C -0.08 -2.40 4.96 -19.85 -0.10 -2.49 16 17 C -0.11 -2.83 9.66 22.26 0.22 -2.61 16 18 C -0.15 -3.40 9.99 22.37 0.22 -3.18 16 19 C 0.09 2.11 6.70 22.50 0.15 2.26 16 20 O -0.51 -9.68 13.50 -92.42 -1.25 -10.93 16 21 C -0.15 -3.46 9.99 22.36 0.22 -3.24 16 22 C -0.10 -2.62 9.27 22.25 0.21 -2.41 16 23 C -0.12 -4.91 4.56 30.65 0.14 -4.77 16 24 H 0.26 14.36 8.31 -92.71 -0.77 13.59 16 25 H 0.06 3.28 6.17 -2.39 -0.01 3.26 16 26 H 0.03 1.31 8.14 -2.39 -0.02 1.29 16 27 H 0.06 2.20 8.14 -2.39 -0.02 2.18 16 28 H 0.08 2.63 8.14 -2.39 -0.02 2.61 16 29 H 0.34 10.37 7.06 -89.69 -0.63 9.74 16 30 H 0.13 3.21 8.03 -2.91 -0.02 3.18 16 31 H 0.14 2.69 8.06 -2.91 -0.02 2.66 16 32 H 0.41 3.52 9.06 -74.05 -0.67 2.84 16 33 H 0.14 2.73 8.06 -2.91 -0.02 2.71 16 34 H 0.13 3.21 6.63 -2.91 -0.02 3.19 16 35 H 0.04 1.86 8.14 -2.39 -0.02 1.84 16 36 H 0.05 1.93 8.14 -2.39 -0.02 1.91 16 Total: -1.00 -63.25 293.55 0.20 -63.05 By element: Atomic # 1 Polarization: 20.78 SS G_CDS: -0.22 Total: 20.56 kcal Atomic # 6 Polarization: -43.56 SS G_CDS: 2.54 Total: -41.02 kcal Atomic # 7 Polarization: -74.70 SS G_CDS: -2.91 Total: -77.60 kcal Atomic # 8 Polarization: -9.68 SS G_CDS: -1.25 Total: -10.93 kcal Atomic # 14 Polarization: 43.92 SS G_CDS: 2.03 Total: 45.94 kcal Total: -63.25 0.20 -63.05 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259767865.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.673 kcal (2) G-P(sol) polarization free energy of solvation -63.252 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.580 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.200 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.053 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.380 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds