Wall clock time and date at job start Mon Mar 30 2020 06:39:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86798 * 120.00190 * 2 1 4 4 H 1.48496 * 109.47250 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.47283 * 300.00502 * 3 2 1 6 6 H 1.48501 * 109.47109 * 60.00633 * 3 2 1 7 7 C 1.37875 * 120.00012 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00135 * 179.97438 * 7 2 1 9 9 C 1.50704 * 119.99939 * 359.97438 * 7 2 1 10 10 H 1.09002 * 109.52452 * 60.00017 * 9 7 2 11 11 C 1.53119 * 109.57327 * 299.83957 * 9 7 2 12 12 C 1.53036 * 109.27852 * 182.40997 * 11 9 7 13 13 N 1.46840 * 109.52594 * 59.18079 * 12 11 9 14 14 C 1.46847 * 111.19808 * 298.26202 * 13 12 11 15 15 H 1.09004 * 109.44906 * 301.72461 * 14 13 12 16 16 C 1.50700 * 109.46261 * 181.75676 * 14 13 12 17 17 C 1.38254 * 119.94364 * 319.66699 * 16 14 13 18 18 C 1.38156 * 120.05506 * 179.72680 * 17 16 14 19 19 C 1.38730 * 119.94086 * 0.54817 * 18 17 16 20 20 O 1.35902 * 120.05499 * 179.74890 * 19 18 17 21 21 C 1.38728 * 119.89097 * 359.73026 * 19 18 17 22 22 C 1.38146 * 119.94382 * 359.97438 * 21 19 18 23 23 C 1.53032 * 109.52562 * 61.73611 * 14 13 12 24 24 H 0.97004 * 119.99916 * 359.97438 * 1 2 3 25 25 H 1.08999 * 109.50798 * 302.35382 * 11 9 7 26 26 H 1.09001 * 109.50084 * 62.46763 * 11 9 7 27 27 H 1.09000 * 109.46467 * 299.16383 * 12 11 9 28 28 H 1.09000 * 109.46021 * 179.19685 * 12 11 9 29 29 H 1.00900 * 110.99792 * 62.35183 * 13 12 11 30 30 H 1.07999 * 119.97842 * 0.02562 * 17 16 14 31 31 H 1.07999 * 120.02751 * 180.27773 * 18 17 16 32 32 H 0.96701 * 113.99903 * 269.98104 * 20 19 18 33 33 H 1.07998 * 120.03003 * 179.97438 * 21 19 18 34 34 H 1.08000 * 119.97426 * 180.02562 * 22 21 19 35 35 H 1.08999 * 109.50437 * 180.88272 * 23 14 13 36 36 H 1.09002 * 109.50306 * 60.76402 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3463 -0.0006 5 1 1.8904 2.3965 -1.2125 6 1 1.8906 2.3963 1.2126 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 1 0.6236 -2.5576 -0.8900 11 6 0.3733 -2.5847 1.2512 12 6 -0.3424 -3.9372 1.2750 13 7 0.6512 -5.0184 1.2773 14 6 1.4749 -4.9851 0.0620 15 1 0.8325 -5.0712 -0.8144 16 6 2.4499 -6.1339 0.0847 17 6 3.0804 -6.4808 1.2652 18 6 3.9704 -7.5372 1.2898 19 6 4.2398 -8.2429 0.1262 20 8 5.1188 -9.2792 0.1467 21 6 3.6102 -7.8892 -1.0583 22 6 2.7165 -6.8360 -1.0763 23 6 2.2449 -3.6639 0.0021 24 1 -0.4850 0.8401 0.0004 25 1 0.9965 -2.4872 2.1401 26 1 -0.3646 -1.7827 1.2337 27 1 -0.9762 -4.0283 0.3928 28 1 -0.9572 -4.0070 2.1724 29 1 1.2266 -4.9789 2.1052 30 1 2.8735 -5.9286 2.1700 31 1 4.4593 -7.8106 2.2132 32 1 6.0337 -9.0225 -0.0323 33 1 3.8186 -8.4368 -1.9655 34 1 2.2257 -6.5605 -1.9981 35 1 2.8441 -3.6329 -0.9079 36 1 2.8976 -3.5833 0.8713 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259767868.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:39:08 Heat of formation + Delta-G solvation = -51.397427 kcal Electronic energy + Delta-G solvation = -17714.710701 eV Core-core repulsion = 14969.083411 eV Total energy + Delta-G solvation = -2745.627290 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 247.131 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.97088 -39.52215 -37.43941 -35.16811 -32.62156 -32.26675 -31.83443 -29.10038 -27.22529 -24.47715 -23.85675 -23.25402 -21.87112 -20.89537 -19.29444 -18.50705 -17.29887 -16.68738 -16.53945 -16.15266 -15.67961 -15.22000 -15.04001 -14.82478 -14.38623 -14.26842 -14.07839 -13.55180 -13.17991 -13.05258 -12.90150 -12.57942 -12.54992 -12.40591 -12.05867 -11.92835 -11.41683 -11.27417 -11.19576 -10.78237 -10.49790 -9.87602 -9.50316 -9.08716 -8.08772 -6.25624 0.32951 0.46540 1.36901 1.39400 1.50002 2.40318 2.72329 3.15166 3.35955 3.43437 3.90115 3.96369 4.11721 4.24238 4.42728 4.47044 4.54128 4.63968 4.70955 4.72387 4.85020 4.98079 5.02541 5.13796 5.20424 5.27638 5.41845 5.45948 5.50634 5.57005 5.72001 5.93452 5.95456 5.97718 6.26470 6.35297 6.54342 6.86198 6.91022 7.42822 8.92640 Molecular weight = 247.13amu Principal moments of inertia in cm(-1) A = 0.034311 B = 0.005154 C = 0.004792 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 815.872990 B = 5431.292253 C = 5841.359512 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.914 5.914 2 C 0.015 3.985 3 Si 0.951 3.049 4 H -0.270 1.270 5 H -0.280 1.280 6 H -0.279 1.279 7 C -0.535 4.535 8 H 0.047 0.953 9 C 0.046 3.954 10 H -0.007 1.007 11 C -0.135 4.135 12 C 0.065 3.935 13 N -0.671 5.671 14 C 0.132 3.868 15 H 0.074 0.926 16 C -0.081 4.081 17 C -0.098 4.098 18 C -0.147 4.147 19 C 0.091 3.909 20 O -0.509 6.509 21 C -0.147 4.147 22 C -0.107 4.107 23 C -0.117 4.117 24 H 0.260 0.740 25 H 0.029 0.971 26 H 0.062 0.938 27 H 0.056 0.944 28 H 0.080 0.920 29 H 0.339 0.661 30 H 0.129 0.871 31 H 0.143 0.857 32 H 0.408 0.592 33 H 0.144 0.856 34 H 0.133 0.867 35 H 0.046 0.954 36 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.154 -13.876 1.174 15.655 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.554 5.554 2 C -0.184 4.184 3 Si 0.777 3.223 4 H -0.194 1.194 5 H -0.206 1.206 6 H -0.205 1.205 7 C -0.573 4.573 8 H 0.066 0.934 9 C 0.027 3.973 10 H 0.011 0.989 11 C -0.174 4.174 12 C -0.064 4.064 13 N -0.300 5.300 14 C 0.022 3.978 15 H 0.092 0.908 16 C -0.082 4.082 17 C -0.117 4.117 18 C -0.166 4.166 19 C 0.047 3.953 20 O -0.322 6.322 21 C -0.165 4.165 22 C -0.126 4.126 23 C -0.157 4.157 24 H 0.070 0.930 25 H 0.047 0.953 26 H 0.080 0.920 27 H 0.075 0.925 28 H 0.098 0.902 29 H 0.158 0.842 30 H 0.147 0.853 31 H 0.161 0.839 32 H 0.267 0.733 33 H 0.162 0.838 34 H 0.151 0.849 35 H 0.064 0.936 36 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 6.066 -14.566 1.052 15.814 hybrid contribution 1.175 2.382 -0.066 2.657 sum 7.241 -12.184 0.986 14.208 Atomic orbital electron populations 1.70018 1.07055 1.27022 1.51294 1.25705 0.95666 1.02233 0.94811 0.85611 0.79033 0.79981 0.77666 1.19402 1.20624 1.20524 1.21578 0.92816 0.92324 1.50583 0.93448 1.18646 0.92992 0.92209 0.93441 0.98933 1.22088 0.99757 0.97852 0.97745 1.21967 0.94316 0.88517 1.01596 1.60940 1.18512 1.46392 1.04186 1.20394 0.92143 0.91090 0.94157 0.90756 1.19879 0.97389 0.96496 0.94401 1.20933 0.95925 0.96985 0.97828 1.21551 1.00293 0.95660 0.99078 1.18543 0.94838 0.89115 0.92798 1.84760 1.21956 1.31597 1.93849 1.21536 0.98766 0.97723 0.98465 1.21071 0.98205 0.95176 0.98100 1.22139 0.98260 0.94851 1.00407 0.93041 0.95267 0.91986 0.92537 0.90212 0.84201 0.85314 0.83933 0.73288 0.83797 0.84887 0.93560 0.93382 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -52.54 11.37 21.45 0.24 -52.29 16 2 C 0.01 0.81 5.31 84.65 0.45 1.26 16 3 Si 0.95 43.60 29.54 68.60 2.03 45.63 16 4 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 5 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 6 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16 7 C -0.53 -29.55 8.57 25.60 0.22 -29.33 16 8 H 0.05 2.61 7.74 -2.91 -0.02 2.58 16 9 C 0.05 2.26 2.16 -11.46 -0.02 2.24 16 10 H -0.01 -0.42 8.14 -2.39 -0.02 -0.44 16 11 C -0.13 -6.21 5.11 30.65 0.16 -6.05 16 12 C 0.07 2.44 6.55 86.33 0.57 3.00 16 13 N -0.67 -22.35 6.36 -495.58 -3.15 -25.50 16 14 C 0.13 4.53 2.66 44.19 0.12 4.65 16 15 H 0.07 2.67 8.00 -2.38 -0.02 2.65 16 16 C -0.08 -2.39 4.96 -19.85 -0.10 -2.49 16 17 C -0.10 -2.61 9.27 22.25 0.21 -2.41 16 18 C -0.15 -3.46 9.99 22.37 0.22 -3.23 16 19 C 0.09 2.10 6.70 22.50 0.15 2.25 16 20 O -0.51 -9.68 13.50 -92.45 -1.25 -10.93 16 21 C -0.15 -3.40 9.99 22.37 0.22 -3.17 16 22 C -0.11 -2.82 9.66 22.26 0.22 -2.61 16 23 C -0.12 -4.77 4.56 30.64 0.14 -4.63 16 24 H 0.26 14.22 8.31 -92.71 -0.77 13.45 16 25 H 0.03 1.33 8.14 -2.39 -0.02 1.31 16 26 H 0.06 3.27 6.17 -2.39 -0.01 3.25 16 27 H 0.06 2.19 8.14 -2.39 -0.02 2.17 16 28 H 0.08 2.64 8.14 -2.39 -0.02 2.62 16 29 H 0.34 10.47 7.07 -89.69 -0.63 9.83 16 30 H 0.13 3.20 6.63 -2.91 -0.02 3.18 16 31 H 0.14 2.73 8.06 -2.91 -0.02 2.71 16 32 H 0.41 3.71 9.06 -74.06 -0.67 3.04 16 33 H 0.14 2.69 8.06 -2.91 -0.02 2.66 16 34 H 0.13 3.20 8.03 -2.91 -0.02 3.18 16 35 H 0.05 1.89 8.14 -2.39 -0.02 1.87 16 36 H 0.05 1.94 8.14 -2.39 -0.02 1.92 16 Total: -1.00 -62.89 293.54 0.20 -62.69 By element: Atomic # 1 Polarization: 21.15 SS G_CDS: -0.22 Total: 20.93 kcal Atomic # 6 Polarization: -43.07 SS G_CDS: 2.54 Total: -40.52 kcal Atomic # 7 Polarization: -74.89 SS G_CDS: -2.91 Total: -77.80 kcal Atomic # 8 Polarization: -9.68 SS G_CDS: -1.25 Total: -10.93 kcal Atomic # 14 Polarization: 43.60 SS G_CDS: 2.03 Total: 45.63 kcal Total: -62.89 0.20 -62.69 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259767868.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.294 kcal (2) G-P(sol) polarization free energy of solvation -62.889 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.595 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.198 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.691 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.397 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds