Wall clock time and date at job start Mon Mar 30 2020 06:39:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86807 * 119.99737 * 2 1 4 4 H 1.48504 * 109.47168 * 270.00369 * 3 2 1 5 5 H 1.48498 * 109.46918 * 30.00463 * 3 2 1 6 6 H 1.48495 * 109.46865 * 150.00341 * 3 2 1 7 7 C 1.37880 * 120.00422 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00096 * 179.97438 * 7 2 1 9 9 C 1.50700 * 119.99761 * 359.97438 * 7 2 1 10 10 H 1.08994 * 109.52228 * 60.12609 * 9 7 2 11 11 C 1.53124 * 109.52282 * 300.00152 * 9 7 2 12 12 C 1.53036 * 109.27759 * 297.74999 * 11 9 7 13 13 N 1.46843 * 109.52504 * 300.82003 * 12 11 9 14 14 C 1.46845 * 111.19651 * 61.74427 * 13 12 11 15 15 H 1.09002 * 109.46296 * 58.27362 * 14 13 12 16 16 C 1.50702 * 109.46245 * 178.25359 * 14 13 12 17 17 C 1.38267 * 119.94343 * 39.74620 * 16 14 13 18 18 C 1.38144 * 120.05372 * 179.72802 * 17 16 14 19 19 C 1.38731 * 119.94309 * 0.56928 * 18 17 16 20 20 O 1.35898 * 120.05405 * 179.68246 * 19 18 17 21 21 C 1.38729 * 119.89144 * 359.70711 * 19 18 17 22 22 C 1.38140 * 119.94055 * 359.97438 * 21 19 18 23 23 C 1.53037 * 109.52521 * 298.25692 * 14 13 12 24 24 H 0.96999 * 120.00139 * 359.97438 * 1 2 3 25 25 H 1.08994 * 109.50502 * 177.80924 * 11 9 7 26 26 H 1.09004 * 109.50104 * 57.69522 * 11 9 7 27 27 H 1.09001 * 109.46076 * 180.80414 * 12 11 9 28 28 H 1.09001 * 109.45369 * 60.83744 * 12 11 9 29 29 H 1.00898 * 110.99889 * 185.83859 * 13 12 11 30 30 H 1.08004 * 119.97158 * 359.97438 * 17 16 14 31 31 H 1.08004 * 120.02942 * 180.24889 * 18 17 16 32 32 H 0.96704 * 114.00004 * 270.02326 * 20 19 18 33 33 H 1.07996 * 120.02824 * 179.97438 * 21 19 18 34 34 H 1.08005 * 119.97408 * 180.02562 * 22 21 19 35 35 H 1.08996 * 109.50651 * 179.12183 * 23 14 13 36 36 H 1.09001 * 109.50257 * 299.24026 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0466 -1.4001 5 1 1.4465 2.6526 0.7001 6 1 3.5466 1.4402 0.6999 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 1 0.6255 -2.5586 -0.8911 11 6 0.3708 -2.5818 1.2496 12 6 1.2591 -2.5576 2.4956 13 7 2.1914 -3.6914 2.4558 14 6 3.0790 -3.6082 1.2889 15 1 3.6339 -2.6705 1.3209 16 6 4.0453 -4.7644 1.3096 17 6 3.6113 -6.0198 1.6936 18 6 4.4937 -7.0825 1.7080 19 6 5.8192 -6.8869 1.3482 20 8 6.6908 -7.9294 1.3678 21 6 6.2536 -5.6251 0.9688 22 6 5.3656 -4.5671 0.9498 23 6 2.2452 -3.6638 0.0069 24 1 -0.4850 0.8400 0.0004 25 1 -0.2032 -3.5081 1.2299 26 1 -0.3106 -1.7312 1.2718 27 1 0.6362 -2.6307 3.3871 28 1 1.8224 -1.6248 2.5217 29 1 2.7232 -3.7524 3.3110 30 1 2.5805 -6.1705 1.9787 31 1 4.1533 -8.0638 2.0042 32 1 7.1438 -8.0475 2.2140 33 1 7.2850 -5.4703 0.6887 34 1 5.7031 -3.5847 0.6541 35 1 2.9029 -3.5863 -0.8587 36 1 1.7006 -4.6072 -0.0324 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259767873.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:39:12 Heat of formation + Delta-G solvation = -27.872085 kcal Electronic energy + Delta-G solvation = -17959.497856 eV Core-core repulsion = 15214.890701 eV Total energy + Delta-G solvation = -2744.607155 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 247.131 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.72836 -38.01779 -36.25911 -33.09139 -31.05951 -30.79227 -30.48072 -27.68212 -25.16257 -23.08870 -22.56902 -21.85611 -20.55483 -18.53649 -18.29859 -16.28151 -15.74234 -15.57087 -15.27466 -14.58921 -14.53045 -13.65226 -13.54247 -13.14316 -12.94831 -12.59112 -12.30822 -12.07530 -11.84061 -11.73277 -11.25208 -10.95562 -10.80789 -10.58845 -10.35131 -10.22301 -9.85256 -9.33541 -9.05865 -8.84489 -8.76911 -8.38340 -8.17722 -7.59717 -5.99756 -4.05175 1.41612 1.56080 3.27060 3.34557 3.36341 3.81448 4.30805 4.41188 4.84587 5.12206 5.15694 5.28413 5.33317 5.66875 5.77218 5.95204 6.04707 6.12685 6.27666 6.32671 6.46317 6.48312 6.58352 6.66968 6.75659 6.84888 6.98800 7.02254 7.06763 7.25232 7.51033 7.64426 7.69001 7.73041 7.92323 8.17193 8.18637 8.45501 8.97497 9.58528 11.05787 Molecular weight = 247.13amu Principal moments of inertia in cm(-1) A = 0.034952 B = 0.005794 C = 0.005300 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 800.897381 B = 4831.550135 C = 5281.836000 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.063 3.937 3 Si 0.884 3.116 4 H -0.281 1.281 5 H -0.287 1.287 6 H -0.276 1.276 7 C -0.507 4.507 8 H 0.052 0.948 9 C 0.043 3.957 10 H 0.027 0.973 11 C -0.106 4.106 12 C 0.073 3.927 13 N -0.685 5.685 14 C 0.135 3.865 15 H 0.055 0.945 16 C -0.076 4.076 17 C -0.079 4.079 18 C -0.151 4.151 19 C 0.086 3.914 20 O -0.503 6.503 21 C -0.148 4.148 22 C -0.102 4.102 23 C -0.092 4.092 24 H 0.259 0.741 25 H 0.023 0.977 26 H 0.093 0.907 27 H 0.047 0.953 28 H 0.039 0.961 29 H 0.324 0.676 30 H 0.136 0.864 31 H 0.122 0.878 32 H 0.384 0.616 33 H 0.122 0.878 34 H 0.125 0.875 35 H 0.048 0.952 36 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.610 -9.960 5.679 14.338 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.138 4.138 3 Si 0.712 3.288 4 H -0.207 1.207 5 H -0.213 1.213 6 H -0.202 1.202 7 C -0.545 4.545 8 H 0.070 0.930 9 C 0.024 3.976 10 H 0.045 0.955 11 C -0.144 4.144 12 C -0.055 4.055 13 N -0.315 5.315 14 C 0.025 3.975 15 H 0.072 0.928 16 C -0.077 4.077 17 C -0.098 4.098 18 C -0.169 4.169 19 C 0.042 3.958 20 O -0.312 6.312 21 C -0.167 4.167 22 C -0.121 4.121 23 C -0.130 4.130 24 H 0.069 0.931 25 H 0.041 0.959 26 H 0.111 0.889 27 H 0.065 0.935 28 H 0.057 0.943 29 H 0.139 0.861 30 H 0.154 0.846 31 H 0.140 0.860 32 H 0.239 0.761 33 H 0.140 0.860 34 H 0.143 0.857 35 H 0.067 0.933 36 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 7.805 -10.305 4.774 13.780 hybrid contribution 1.321 1.725 0.727 2.291 sum 9.125 -8.579 5.501 13.680 Atomic orbital electron populations 1.69859 1.05802 1.26265 1.50848 1.24932 0.94766 0.98787 0.95338 0.86722 0.79864 0.84042 0.78125 1.20723 1.21280 1.20151 1.21162 0.92600 0.90632 1.50152 0.92969 1.18736 0.92748 0.91695 0.94401 0.95523 1.21566 0.98246 1.00050 0.94567 1.21825 0.94310 0.90935 0.98464 1.60449 1.20969 1.46178 1.03917 1.20372 0.91241 0.93086 0.92776 0.92762 1.20296 0.93897 0.95895 0.97563 1.21023 1.00058 0.91278 0.97420 1.21418 0.93366 0.99590 1.02544 1.18459 0.89262 0.86566 1.01469 1.84828 1.58271 1.49179 1.38970 1.21302 1.00236 0.92077 1.03062 1.21010 0.92862 0.98800 0.99381 1.21611 0.97957 0.99449 0.93938 0.93065 0.95852 0.88871 0.93483 0.94275 0.86066 0.84625 0.85953 0.76149 0.85970 0.85743 0.93288 0.93791 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.76 11.31 55.43 0.63 -24.13 16 2 C 0.06 1.68 5.30 -17.82 -0.09 1.59 16 3 Si 0.88 20.84 29.54 -169.99 -5.02 15.82 16 4 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 5 H -0.29 -6.76 7.11 56.52 0.40 -6.35 16 6 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 7 C -0.51 -13.31 6.74 -34.44 -0.23 -13.54 16 8 H 0.05 1.37 6.88 -52.49 -0.36 1.00 16 9 C 0.04 1.04 2.61 -91.65 -0.24 0.80 16 10 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 11 C -0.11 -2.46 5.41 -26.65 -0.14 -2.61 16 12 C 0.07 1.50 6.34 -3.84 -0.02 1.47 16 13 N -0.68 -12.36 5.73 -107.99 -0.62 -12.98 16 14 C 0.13 2.52 2.42 -68.87 -0.17 2.35 16 15 H 0.05 1.12 6.64 -51.93 -0.34 0.77 16 16 C -0.08 -1.23 4.87 -104.60 -0.51 -1.74 16 17 C -0.08 -1.19 9.32 -39.61 -0.37 -1.55 16 18 C -0.15 -2.03 9.99 -39.43 -0.39 -2.42 16 19 C 0.09 1.16 6.70 -39.22 -0.26 0.89 16 20 O -0.50 -5.83 13.50 -19.42 -0.26 -6.09 16 21 C -0.15 -2.00 9.99 -39.44 -0.39 -2.40 16 22 C -0.10 -1.52 9.66 -39.61 -0.38 -1.91 16 23 C -0.09 -1.92 4.81 -26.65 -0.13 -2.05 16 24 H 0.26 6.95 8.31 -40.82 -0.34 6.61 16 25 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 26 H 0.09 2.42 6.02 -51.93 -0.31 2.10 16 27 H 0.05 0.88 8.14 -51.93 -0.42 0.45 16 28 H 0.04 0.88 7.31 -51.93 -0.38 0.50 16 29 H 0.32 5.16 8.78 -39.29 -0.35 4.82 16 30 H 0.14 2.03 7.70 -52.48 -0.40 1.62 16 31 H 0.12 1.42 8.06 -52.48 -0.42 0.99 16 32 H 0.38 2.49 9.06 45.56 0.41 2.90 16 33 H 0.12 1.42 8.06 -52.49 -0.42 1.00 16 34 H 0.12 1.77 8.03 -52.48 -0.42 1.35 16 35 H 0.05 1.03 8.14 -51.93 -0.42 0.60 16 36 H 0.04 0.89 8.14 -51.93 -0.42 0.47 16 LS Contribution 291.12 15.07 4.39 4.39 Total: -1.00 -28.66 291.12 -8.48 -37.14 By element: Atomic # 1 Polarization: 11.21 SS G_CDS: -4.25 Total: 6.96 kcal Atomic # 6 Polarization: -17.77 SS G_CDS: -3.34 Total: -21.11 kcal Atomic # 7 Polarization: -37.11 SS G_CDS: 0.01 Total: -37.11 kcal Atomic # 8 Polarization: -5.83 SS G_CDS: -0.26 Total: -6.09 kcal Atomic # 14 Polarization: 20.84 SS G_CDS: -5.02 Total: 15.82 kcal Total LS contribution 4.39 Total: 4.39 kcal Total: -28.66 -8.48 -37.14 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259767873.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.264 kcal (2) G-P(sol) polarization free energy of solvation -28.657 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.393 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.479 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.136 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.872 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds