Wall clock time and date at job start Mon Mar 30 2020 06:39:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86807 * 119.99737 * 2 1 4 4 H 1.48504 * 109.47168 * 270.00369 * 3 2 1 5 5 H 1.48498 * 109.46918 * 30.00463 * 3 2 1 6 6 H 1.48495 * 109.46865 * 150.00341 * 3 2 1 7 7 C 1.37880 * 120.00422 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00096 * 179.97438 * 7 2 1 9 9 C 1.50700 * 119.99761 * 359.97438 * 7 2 1 10 10 H 1.08994 * 109.52228 * 60.12609 * 9 7 2 11 11 C 1.53124 * 109.52282 * 300.00152 * 9 7 2 12 12 C 1.53036 * 109.27759 * 297.74999 * 11 9 7 13 13 N 1.46843 * 109.52504 * 300.82003 * 12 11 9 14 14 C 1.46845 * 111.19651 * 61.74427 * 13 12 11 15 15 H 1.09002 * 109.46296 * 58.27362 * 14 13 12 16 16 C 1.50702 * 109.46245 * 178.25359 * 14 13 12 17 17 C 1.38267 * 119.94343 * 39.74620 * 16 14 13 18 18 C 1.38144 * 120.05372 * 179.72802 * 17 16 14 19 19 C 1.38731 * 119.94309 * 0.56928 * 18 17 16 20 20 O 1.35898 * 120.05405 * 179.68246 * 19 18 17 21 21 C 1.38729 * 119.89144 * 359.70711 * 19 18 17 22 22 C 1.38140 * 119.94055 * 359.97438 * 21 19 18 23 23 C 1.53037 * 109.52521 * 298.25692 * 14 13 12 24 24 H 0.96999 * 120.00139 * 359.97438 * 1 2 3 25 25 H 1.08994 * 109.50502 * 177.80924 * 11 9 7 26 26 H 1.09004 * 109.50104 * 57.69522 * 11 9 7 27 27 H 1.09001 * 109.46076 * 180.80414 * 12 11 9 28 28 H 1.09001 * 109.45369 * 60.83744 * 12 11 9 29 29 H 1.00898 * 110.99889 * 185.83859 * 13 12 11 30 30 H 1.08004 * 119.97158 * 359.97438 * 17 16 14 31 31 H 1.08004 * 120.02942 * 180.24889 * 18 17 16 32 32 H 0.96704 * 114.00004 * 270.02326 * 20 19 18 33 33 H 1.07996 * 120.02824 * 179.97438 * 21 19 18 34 34 H 1.08005 * 119.97408 * 180.02562 * 22 21 19 35 35 H 1.08996 * 109.50651 * 179.12183 * 23 14 13 36 36 H 1.09001 * 109.50257 * 299.24026 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0466 -1.4001 5 1 1.4465 2.6526 0.7001 6 1 3.5466 1.4402 0.6999 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 1 0.6255 -2.5586 -0.8911 11 6 0.3708 -2.5818 1.2496 12 6 1.2591 -2.5576 2.4956 13 7 2.1914 -3.6914 2.4558 14 6 3.0790 -3.6082 1.2889 15 1 3.6339 -2.6705 1.3209 16 6 4.0453 -4.7644 1.3096 17 6 3.6113 -6.0198 1.6936 18 6 4.4937 -7.0825 1.7080 19 6 5.8192 -6.8869 1.3482 20 8 6.6908 -7.9294 1.3678 21 6 6.2536 -5.6251 0.9688 22 6 5.3656 -4.5671 0.9498 23 6 2.2452 -3.6638 0.0069 24 1 -0.4850 0.8400 0.0004 25 1 -0.2032 -3.5081 1.2299 26 1 -0.3106 -1.7312 1.2718 27 1 0.6362 -2.6307 3.3871 28 1 1.8224 -1.6248 2.5217 29 1 2.7232 -3.7524 3.3110 30 1 2.5805 -6.1705 1.9787 31 1 4.1533 -8.0638 2.0042 32 1 7.1438 -8.0475 2.2140 33 1 7.2850 -5.4703 0.6887 34 1 5.7031 -3.5847 0.6541 35 1 2.9029 -3.5863 -0.8587 36 1 1.7006 -4.6072 -0.0324 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259767873.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:39:11 Heat of formation + Delta-G solvation = -46.837973 kcal Electronic energy + Delta-G solvation = -17960.320278 eV Core-core repulsion = 15214.890701 eV Total energy + Delta-G solvation = -2745.429578 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 247.131 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.89842 -39.44698 -37.43688 -34.95120 -32.50207 -32.38941 -31.84202 -29.06452 -27.17092 -24.47274 -23.85257 -23.43561 -21.90541 -20.37500 -19.26602 -17.75487 -17.67564 -16.78935 -16.52738 -16.25888 -15.84691 -15.07419 -14.90877 -14.73672 -14.30713 -14.20012 -14.02355 -13.59164 -13.25489 -12.98181 -12.84913 -12.81063 -12.44127 -12.31792 -12.05183 -11.72691 -11.30831 -11.14119 -10.91032 -10.75300 -10.37259 -9.86188 -9.37267 -9.18219 -8.06246 -6.17734 0.32549 0.48150 1.38758 1.40853 1.48893 2.42902 2.74237 3.21353 3.36879 3.39759 3.96118 4.05981 4.15419 4.39358 4.50152 4.56085 4.58237 4.68788 4.73440 4.90917 4.96462 5.02987 5.14593 5.21618 5.27256 5.40513 5.44402 5.52071 5.59094 5.65096 5.73866 5.85481 5.97462 6.03943 6.35176 6.42176 6.72400 6.91692 6.92182 7.48596 8.98485 Molecular weight = 247.13amu Principal moments of inertia in cm(-1) A = 0.034952 B = 0.005794 C = 0.005300 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 800.897381 B = 4831.550135 C = 5281.836000 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C 0.017 3.983 3 Si 0.943 3.057 4 H -0.279 1.279 5 H -0.284 1.284 6 H -0.270 1.270 7 C -0.513 4.513 8 H 0.049 0.951 9 C 0.037 3.963 10 H -0.011 1.011 11 C -0.101 4.101 12 C 0.083 3.917 13 N -0.673 5.673 14 C 0.146 3.854 15 H 0.033 0.967 16 C -0.094 4.094 17 C -0.081 4.081 18 C -0.151 4.151 19 C 0.096 3.904 20 O -0.508 6.508 21 C -0.150 4.150 22 C -0.109 4.109 23 C -0.084 4.084 24 H 0.259 0.741 25 H 0.028 0.972 26 H 0.064 0.936 27 H 0.069 0.931 28 H 0.015 0.985 29 H 0.341 0.659 30 H 0.134 0.866 31 H 0.143 0.857 32 H 0.409 0.591 33 H 0.142 0.858 34 H 0.125 0.875 35 H 0.043 0.957 36 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.454 -11.243 6.694 16.748 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.182 4.182 3 Si 0.770 3.230 4 H -0.205 1.205 5 H -0.210 1.210 6 H -0.195 1.195 7 C -0.551 4.551 8 H 0.067 0.933 9 C 0.018 3.982 10 H 0.007 0.993 11 C -0.139 4.139 12 C -0.046 4.046 13 N -0.305 5.305 14 C 0.036 3.964 15 H 0.051 0.949 16 C -0.095 4.095 17 C -0.099 4.099 18 C -0.169 4.169 19 C 0.051 3.949 20 O -0.322 6.322 21 C -0.168 4.168 22 C -0.127 4.127 23 C -0.122 4.122 24 H 0.068 0.932 25 H 0.047 0.953 26 H 0.082 0.918 27 H 0.088 0.912 28 H 0.034 0.966 29 H 0.159 0.841 30 H 0.152 0.848 31 H 0.161 0.839 32 H 0.268 0.732 33 H 0.160 0.840 34 H 0.143 0.857 35 H 0.062 0.938 36 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 9.677 -11.605 5.815 16.190 hybrid contribution 0.792 2.014 0.391 2.200 sum 10.469 -9.590 6.207 15.495 Atomic orbital electron populations 1.69998 1.07039 1.26861 1.51670 1.25619 0.95492 1.01840 0.95211 0.85781 0.78859 0.80311 0.78062 1.20518 1.21014 1.19463 1.21363 0.92514 0.91563 1.49701 0.93264 1.18732 0.93215 0.92774 0.93437 0.99320 1.21410 0.98111 0.98947 0.95442 1.21621 0.94360 0.90770 0.97832 1.60371 1.20937 1.44458 1.04693 1.20103 0.91035 0.93598 0.91637 0.94949 1.20025 0.93911 0.95378 1.00178 1.21003 1.00285 0.91168 0.97476 1.21606 0.93240 1.00029 1.02034 1.18539 0.89549 0.86767 1.00000 1.84767 1.58085 1.48275 1.41028 1.21492 1.00930 0.91772 1.02597 1.21075 0.92681 0.99503 0.99453 1.21468 0.97385 0.97952 0.95417 0.93170 0.95301 0.91785 0.91240 0.96625 0.84103 0.84827 0.83874 0.73227 0.84013 0.85730 0.93837 0.93305 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -52.37 11.31 21.45 0.24 -52.13 16 2 C 0.02 0.92 5.30 84.66 0.45 1.36 16 3 Si 0.94 43.19 29.54 68.60 2.03 45.22 16 4 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 5 H -0.28 -12.84 7.11 99.48 0.71 -12.13 16 6 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 7 C -0.51 -27.57 6.74 25.60 0.17 -27.40 16 8 H 0.05 2.62 6.88 -2.91 -0.02 2.60 16 9 C 0.04 1.87 2.61 -11.46 -0.03 1.84 16 10 H -0.01 -0.65 8.14 -2.39 -0.02 -0.67 16 11 C -0.10 -4.78 5.41 30.65 0.17 -4.62 16 12 C 0.08 3.38 6.34 86.33 0.55 3.93 16 13 N -0.67 -23.59 5.73 -495.57 -2.84 -26.43 16 14 C 0.15 5.41 2.42 44.19 0.11 5.52 16 15 H 0.03 1.35 6.64 -2.39 -0.02 1.33 16 16 C -0.09 -2.93 4.87 -19.85 -0.10 -3.03 16 17 C -0.08 -2.25 9.32 22.25 0.21 -2.04 16 18 C -0.15 -3.60 9.99 22.37 0.22 -3.38 16 19 C 0.10 2.24 6.70 22.51 0.15 2.39 16 20 O -0.51 -9.80 13.50 -92.40 -1.25 -11.05 16 21 C -0.15 -3.63 9.99 22.36 0.22 -3.41 16 22 C -0.11 -3.07 9.66 22.25 0.21 -2.86 16 23 C -0.08 -3.58 4.81 30.65 0.15 -3.44 16 24 H 0.26 14.18 8.31 -92.71 -0.77 13.41 16 25 H 0.03 1.29 8.14 -2.39 -0.02 1.27 16 26 H 0.06 3.43 6.02 -2.38 -0.01 3.41 16 27 H 0.07 2.51 8.14 -2.39 -0.02 2.49 16 28 H 0.02 0.70 7.31 -2.39 -0.02 0.69 16 29 H 0.34 10.27 8.78 -89.70 -0.79 9.48 16 30 H 0.13 3.73 7.70 -2.91 -0.02 3.71 16 31 H 0.14 2.79 8.06 -2.91 -0.02 2.77 16 32 H 0.41 3.59 9.06 -74.05 -0.67 2.92 16 33 H 0.14 2.84 8.06 -2.91 -0.02 2.81 16 34 H 0.12 3.44 8.03 -2.91 -0.02 3.42 16 35 H 0.04 1.85 8.14 -2.39 -0.02 1.83 16 36 H 0.05 1.99 8.14 -2.39 -0.02 1.97 16 Total: -1.00 -61.69 291.12 0.30 -61.39 By element: Atomic # 1 Polarization: 18.48 SS G_CDS: -0.37 Total: 18.11 kcal Atomic # 6 Polarization: -37.60 SS G_CDS: 2.48 Total: -35.12 kcal Atomic # 7 Polarization: -75.96 SS G_CDS: -2.60 Total: -78.56 kcal Atomic # 8 Polarization: -9.80 SS G_CDS: -1.25 Total: -11.05 kcal Atomic # 14 Polarization: 43.19 SS G_CDS: 2.03 Total: 45.22 kcal Total: -61.69 0.30 -61.39 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259767873.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.556 kcal (2) G-P(sol) polarization free energy of solvation -61.692 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.136 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.298 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.394 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.838 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds