Wall clock time and date at job start Mon Mar 30 2020 05:51:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47127 * 2 1 4 4 C 1.50697 * 109.47466 * 239.99643 * 2 1 3 5 5 C 1.35206 * 126.50594 * 240.00023 * 4 2 1 6 6 C 1.47060 * 103.27411 * 179.97438 * 5 4 2 7 7 C 1.47358 * 127.40657 * 180.02562 * 6 5 4 8 8 N 1.36164 * 126.65003 * 334.69158 * 7 6 5 9 9 H 0.96998 * 125.78883 * 359.96052 * 8 7 6 10 10 N 1.39860 * 108.42428 * 179.84477 * 8 7 6 11 11 C 1.30226 * 109.64918 * 0.42772 * 10 8 7 12 12 C 1.40783 * 126.65587 * 155.00016 * 7 6 5 13 13 C 1.40905 * 126.62473 * 359.96763 * 12 7 6 14 14 H 1.08003 * 119.99406 * 0.02562 * 13 12 7 15 15 C 1.39968 * 119.99846 * 179.97438 * 13 12 7 16 16 N 1.30865 * 120.00645 * 0.02562 * 15 13 12 17 17 Si 1.86807 * 119.99794 * 179.97438 * 15 13 12 18 18 H 1.48500 * 109.46983 * 0.02562 * 17 15 13 19 19 H 1.48499 * 109.47101 * 120.00535 * 17 15 13 20 20 H 1.48497 * 109.47107 * 240.00407 * 17 15 13 21 21 N 1.31616 * 105.19018 * 0.02562 * 6 5 4 22 22 O 1.20756 * 111.48008 * 359.69674 * 21 6 5 23 23 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 24 24 H 1.09001 * 109.46832 * 60.00321 * 1 2 3 25 25 H 1.09004 * 109.47261 * 300.00303 * 1 2 3 26 26 H 1.08998 * 109.47533 * 119.99499 * 2 1 3 27 27 H 1.08993 * 109.46955 * 60.00011 * 3 2 1 28 28 H 1.09000 * 109.47050 * 179.97438 * 3 2 1 29 29 H 1.09001 * 109.47002 * 299.99574 * 3 2 1 30 30 H 1.07999 * 128.35872 * 0.02562 * 5 4 2 31 31 H 1.07999 * 125.75827 * 179.75724 * 11 10 8 32 32 H 0.97000 * 120.00378 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0324 -0.7105 -1.2304 5 6 2.8128 -1.8141 -1.2595 6 6 2.9894 -2.0649 -2.6978 7 6 3.7575 -3.1525 -3.3292 8 7 4.8070 -3.8283 -2.7852 9 1 5.1846 -3.6762 -1.9048 10 7 5.2466 -4.7808 -3.7103 11 6 4.5221 -4.7095 -4.7900 12 6 3.5525 -3.6902 -4.6140 13 6 2.5723 -3.2928 -5.5450 14 1 1.8831 -2.4989 -5.2976 15 6 2.4927 -3.9261 -6.7907 16 7 3.3281 -4.8877 -7.0906 17 14 1.1927 -3.3997 -8.0246 18 1 0.3782 -2.3005 -7.4470 19 1 1.8530 -2.9255 -9.2673 20 1 0.3139 -4.5542 -8.3407 21 7 2.3139 -1.1092 -3.3000 22 8 1.7858 -0.3714 -2.5031 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 0.5139 0.8900 26 1 1.8934 -0.5137 0.8900 27 1 1.6767 1.9563 0.8899 28 1 3.1300 1.4425 0.0005 29 1 1.6767 1.9564 -0.8900 30 1 3.2100 -2.3764 -0.4274 31 1 4.6400 -5.3233 -5.6708 32 1 3.2727 -5.3268 -7.9537 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259768013.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:51:11 Heat of formation + Delta-G solvation = 108.512927 kcal Electronic energy + Delta-G solvation = -17336.766009 eV Core-core repulsion = 14494.532608 eV Total energy + Delta-G solvation = -2842.233400 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 247.106 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -43.78435 -39.07041 -35.89196 -33.72621 -33.04305 -30.16160 -29.68811 -28.86017 -27.22992 -25.16550 -22.99391 -22.48897 -20.77722 -19.85223 -18.75601 -17.07494 -16.68085 -16.30955 -15.22630 -15.06800 -14.80242 -14.17481 -13.26953 -13.23587 -12.96502 -12.92314 -12.65395 -12.26130 -11.73395 -11.31725 -11.28510 -11.26587 -11.14459 -11.06060 -10.71174 -10.35271 -10.12553 -9.67084 -9.47577 -8.97404 -8.82722 -7.87016 -7.27879 -6.71272 -4.13948 2.13825 2.38201 3.07552 3.12805 3.21748 3.68103 3.78885 3.99878 4.20976 4.27355 4.67734 4.95769 5.04247 5.28837 5.32531 5.47110 5.54261 5.55042 5.75529 5.79299 5.87037 6.06572 6.16066 6.25116 6.34199 6.63229 6.79054 7.15949 7.36401 7.45069 7.96773 8.52564 8.69111 8.85282 8.93721 9.25968 9.35978 10.25132 Molecular weight = 247.11amu Principal moments of inertia in cm(-1) A = 0.023796 B = 0.006796 C = 0.005493 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1176.399932 B = 4119.076164 C = 5095.795766 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.008 4.008 3 C -0.148 4.148 4 C -0.041 4.041 5 C -0.249 4.249 6 C 0.137 3.863 7 C -0.074 4.074 8 N -0.504 5.504 9 H 0.415 0.585 10 N -0.303 5.303 11 C 0.023 3.977 12 C 0.035 3.965 13 C -0.406 4.406 14 H 0.087 0.913 15 C 0.067 3.933 16 N -0.816 5.816 17 Si 0.920 3.080 18 H -0.260 1.260 19 H -0.273 1.273 20 H -0.274 1.274 21 N -0.363 5.363 22 O 0.076 5.924 23 H 0.059 0.941 24 H 0.063 0.937 25 H 0.062 0.938 26 H 0.094 0.906 27 H 0.062 0.938 28 H 0.058 0.942 29 H 0.063 0.937 30 H 0.158 0.842 31 H 0.207 0.793 32 H 0.281 0.719 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.889 7.109 10.206 13.032 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.027 4.027 3 C -0.205 4.205 4 C -0.104 4.104 5 C -0.271 4.271 6 C -0.020 4.020 7 C -0.194 4.194 8 N -0.221 5.221 9 H 0.254 0.746 10 N -0.126 5.126 11 C -0.167 4.167 12 C 0.023 3.977 13 C -0.439 4.439 14 H 0.105 0.895 15 C -0.148 4.148 16 N -0.445 5.445 17 Si 0.745 3.255 18 H -0.183 1.183 19 H -0.199 1.199 20 H -0.199 1.199 21 N -0.074 5.074 22 O 0.016 5.984 23 H 0.078 0.922 24 H 0.083 0.917 25 H 0.081 0.919 26 H 0.112 0.888 27 H 0.081 0.919 28 H 0.077 0.923 29 H 0.082 0.918 30 H 0.175 0.825 31 H 0.223 0.777 32 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -3.206 6.783 9.297 11.946 hybrid contribution -0.681 0.166 0.251 0.745 sum -3.887 6.948 9.548 12.432 Atomic orbital electron populations 1.21865 0.93658 1.02584 1.02488 1.19637 0.96342 0.95727 0.91007 1.21863 1.01487 0.94686 1.02501 1.23993 1.00606 0.97544 0.88222 1.23365 1.06586 1.00453 0.96649 1.21863 0.97707 0.93954 0.88477 1.17635 1.00970 1.03702 0.97054 1.45199 1.28876 1.32189 1.15882 0.74553 1.76350 1.24065 1.10713 1.01425 1.25057 0.94777 1.00342 0.96530 1.18174 0.95443 0.93837 0.90214 1.19175 1.12197 1.15773 0.96764 0.89457 1.25930 0.96246 0.93504 0.99091 1.69400 1.33194 1.19377 1.22541 0.86038 0.80421 0.79492 0.79537 1.18336 1.19858 1.19937 1.74375 1.15119 1.04771 1.13152 1.84636 1.56819 1.44953 1.12014 0.92189 0.91746 0.91894 0.88809 0.91884 0.92307 0.91768 0.82480 0.77728 0.90834 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.51 9.18 37.16 0.34 -1.17 16 2 C -0.01 -0.09 3.34 -91.77 -0.31 -0.39 16 3 C -0.15 -1.46 9.18 37.16 0.34 -1.12 16 4 C -0.04 -0.67 5.96 -35.39 -0.21 -0.88 16 5 C -0.25 -4.49 11.31 -37.09 -0.42 -4.91 16 6 C 0.14 3.16 7.25 -80.67 -0.58 2.58 16 7 C -0.07 -1.89 7.30 -81.27 -0.59 -2.49 16 8 N -0.50 -11.69 7.37 33.90 0.25 -11.44 16 9 H 0.41 7.95 8.96 -182.78 -1.64 6.31 16 10 N -0.30 -7.61 12.57 30.93 0.39 -7.22 16 11 C 0.02 0.63 10.89 -16.88 -0.18 0.44 16 12 C 0.03 0.97 5.95 -106.57 -0.63 0.34 16 13 C -0.41 -11.24 9.12 -37.92 -0.35 -11.59 16 14 H 0.09 2.46 6.73 -52.48 -0.35 2.10 16 15 C 0.07 1.72 5.50 -17.32 -0.10 1.63 16 16 N -0.82 -20.73 10.31 55.55 0.57 -20.15 16 17 Si 0.92 19.54 29.56 -169.99 -5.03 14.52 16 18 H -0.26 -5.61 7.11 56.52 0.40 -5.21 16 19 H -0.27 -5.66 7.11 56.52 0.40 -5.26 16 20 H -0.27 -5.64 7.11 56.52 0.40 -5.24 16 21 N -0.36 -8.52 10.93 34.31 0.38 -8.14 16 22 O 0.08 1.50 11.09 17.32 0.19 1.70 16 23 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 24 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 25 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 26 H 0.09 0.89 8.12 -51.93 -0.42 0.47 16 27 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 28 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 29 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 30 H 0.16 2.37 8.06 -52.49 -0.42 1.94 16 31 H 0.21 5.44 5.74 -52.49 -0.30 5.14 16 32 H 0.28 6.44 8.30 -40.82 -0.34 6.11 16 LS Contribution 282.88 15.07 4.26 4.26 Total: -1.00 -30.16 282.88 -6.48 -36.64 By element: Atomic # 1 Polarization: 12.21 SS G_CDS: -4.81 Total: 7.40 kcal Atomic # 6 Polarization: -14.88 SS G_CDS: -2.69 Total: -17.57 kcal Atomic # 7 Polarization: -48.54 SS G_CDS: 1.59 Total: -46.95 kcal Atomic # 8 Polarization: 1.50 SS G_CDS: 0.19 Total: 1.70 kcal Atomic # 14 Polarization: 19.54 SS G_CDS: -5.03 Total: 14.52 kcal Total LS contribution 4.26 Total: 4.26 kcal Total: -30.16 -6.48 -36.64 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259768013.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 145.156 kcal (2) G-P(sol) polarization free energy of solvation -30.160 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 114.997 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.484 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.643 kcal (6) G-S(sol) free energy of system = (1) + (5) 108.513 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds