Wall clock time and date at job start Mon Mar 30 2020 06:40:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86809 * 119.99796 * 2 1 4 4 H 1.48499 * 109.46982 * 270.00404 * 3 2 1 5 5 H 1.48500 * 109.46811 * 30.00597 * 3 2 1 6 6 H 1.48502 * 109.46845 * 150.00351 * 3 2 1 7 7 C 1.37879 * 120.00126 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99569 * 179.97438 * 7 2 1 9 9 C 1.50693 * 119.99955 * 359.97438 * 7 2 1 10 10 H 1.08999 * 109.53534 * 300.10213 * 9 7 2 11 11 C 1.53124 * 109.50241 * 60.19409 * 9 7 2 12 12 C 1.53119 * 109.15841 * 177.59421 * 11 9 7 13 13 C 1.53040 * 109.28089 * 302.34776 * 12 11 9 14 14 N 1.46846 * 109.51964 * 59.17912 * 13 12 11 15 15 C 1.46846 * 111.19997 * 298.25655 * 14 13 12 16 16 H 1.08997 * 109.46419 * 301.72736 * 15 14 13 17 17 C 1.50703 * 109.45997 * 181.74823 * 15 14 13 18 18 C 1.38258 * 119.94557 * 319.72558 * 17 15 14 19 19 C 1.38145 * 120.05332 * 179.72421 * 18 17 15 20 20 C 1.38739 * 119.94445 * 0.53120 * 19 18 17 21 21 O 1.35896 * 120.05391 * 179.72520 * 20 19 18 22 22 C 1.38729 * 119.88603 * 359.74545 * 20 19 18 23 23 C 1.38145 * 119.94468 * 0.02562 * 22 20 19 24 24 H 0.97003 * 119.99788 * 359.97438 * 1 2 3 25 25 H 1.08998 * 109.52523 * 297.50054 * 11 9 7 26 26 H 1.08999 * 109.52008 * 57.69730 * 11 9 7 27 27 H 1.09004 * 109.50189 * 62.29271 * 12 11 9 28 28 H 1.09001 * 109.50740 * 182.36562 * 12 11 9 29 29 H 1.08996 * 109.46572 * 299.16374 * 13 12 11 30 30 H 1.09004 * 109.46207 * 179.19455 * 13 12 11 31 31 H 1.00904 * 110.99845 * 174.15792 * 14 13 12 32 32 H 1.07995 * 119.97479 * 359.97438 * 18 17 15 33 33 H 1.08001 * 120.03008 * 180.29952 * 19 18 17 34 34 H 0.96706 * 113.99747 * 270.01546 * 21 20 19 35 35 H 1.08002 * 120.02643 * 180.02562 * 22 20 19 36 36 H 1.08003 * 119.96984 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0466 -1.4001 5 1 1.4465 2.6527 0.7002 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1941 -0.0005 8 1 3.0845 -1.1939 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 1 0.6230 -2.5574 0.8884 11 6 0.3737 -2.5828 -1.2527 12 6 -0.3419 -3.9363 -1.2753 13 6 0.6981 -5.0585 -1.2390 14 7 1.5112 -4.9347 -0.0224 15 6 2.2449 -3.6628 -0.0012 16 1 2.8817 -3.5961 -0.8833 17 6 3.0973 -3.5956 1.2398 18 6 2.6007 -4.0588 2.4441 19 6 3.3823 -4.0035 3.5819 20 6 4.6624 -3.4724 3.5176 21 8 5.4311 -3.4118 4.6366 22 6 5.1562 -3.0030 2.3091 23 6 4.3724 -3.0650 1.1732 24 1 -0.4850 0.8401 0.0004 25 1 -0.3643 -1.7809 -1.2346 26 1 0.9971 -2.4856 -2.1414 27 1 -0.9950 -4.0172 -0.4063 28 1 -0.9356 -4.0190 -2.1856 29 1 1.3422 -4.9852 -2.1152 30 1 0.1914 -6.0235 -1.2405 31 1 2.1412 -5.7172 0.0726 32 1 1.6026 -4.4679 2.4946 33 1 2.9958 -4.3699 4.5214 34 1 5.3295 -2.5921 5.1396 35 1 6.1525 -2.5896 2.2564 36 1 4.7565 -2.7000 0.2321 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259770096.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:40:29 Heat of formation + Delta-G solvation = -47.363469 kcal Electronic energy + Delta-G solvation = -18245.789240 eV Core-core repulsion = 15500.336875 eV Total energy + Delta-G solvation = -2745.452365 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 247.131 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.84906 -39.34673 -37.27144 -35.06471 -32.95906 -32.11015 -31.74831 -29.28846 -26.79872 -24.66107 -23.57192 -23.30804 -21.88231 -20.23271 -19.22831 -18.55554 -17.35374 -16.60596 -16.50713 -16.23970 -15.80023 -15.07037 -14.87345 -14.58858 -14.32516 -14.22272 -14.05997 -13.91203 -13.04980 -12.93568 -12.82574 -12.59823 -12.53640 -12.41358 -11.80688 -11.70490 -11.42591 -11.26437 -10.95792 -10.63259 -10.35744 -9.76851 -9.29792 -9.15499 -8.04040 -6.14743 0.44364 0.56575 1.39485 1.41284 1.49981 2.44422 2.82047 3.24273 3.39163 3.46003 4.07652 4.08985 4.18362 4.30479 4.37155 4.50023 4.62996 4.66239 4.79383 4.85188 4.91250 5.06825 5.12102 5.17898 5.23420 5.40163 5.47900 5.54716 5.57345 5.69433 5.83081 5.97441 6.02834 6.16676 6.23316 6.50346 6.70100 6.92158 6.96392 7.51753 9.00855 Molecular weight = 247.13amu Principal moments of inertia in cm(-1) A = 0.015571 B = 0.010213 C = 0.006784 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1797.739954 B = 2740.956013 C = 4126.557876 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C 0.014 3.986 3 Si 0.942 3.058 4 H -0.278 1.278 5 H -0.288 1.288 6 H -0.268 1.268 7 C -0.517 4.517 8 H 0.058 0.942 9 C 0.071 3.929 10 H -0.004 1.004 11 C -0.110 4.110 12 C -0.114 4.114 13 C 0.068 3.932 14 N -0.686 5.686 15 C 0.141 3.859 16 H 0.025 0.975 17 C -0.067 4.067 18 C -0.089 4.089 19 C -0.153 4.153 20 C 0.088 3.912 21 O -0.507 6.507 22 C -0.154 4.154 23 C -0.104 4.104 24 H 0.257 0.743 25 H 0.058 0.942 26 H 0.023 0.977 27 H 0.049 0.951 28 H 0.067 0.933 29 H 0.026 0.974 30 H 0.093 0.907 31 H 0.344 0.656 32 H 0.127 0.873 33 H 0.140 0.860 34 H 0.406 0.594 35 H 0.139 0.861 36 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.050 -7.989 2.860 10.422 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.558 5.558 2 C -0.184 4.184 3 Si 0.769 3.231 4 H -0.204 1.204 5 H -0.214 1.214 6 H -0.193 1.193 7 C -0.556 4.556 8 H 0.076 0.924 9 C 0.052 3.948 10 H 0.014 0.986 11 C -0.148 4.148 12 C -0.152 4.152 13 C -0.061 4.061 14 N -0.318 5.318 15 C 0.032 3.968 16 H 0.043 0.957 17 C -0.067 4.067 18 C -0.107 4.107 19 C -0.171 4.171 20 C 0.043 3.957 21 O -0.320 6.320 22 C -0.172 4.172 23 C -0.122 4.122 24 H 0.066 0.934 25 H 0.076 0.924 26 H 0.042 0.958 27 H 0.067 0.933 28 H 0.086 0.914 29 H 0.044 0.956 30 H 0.112 0.888 31 H 0.162 0.838 32 H 0.145 0.855 33 H 0.158 0.842 34 H 0.264 0.736 35 H 0.157 0.843 36 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 5.567 -8.190 3.059 10.365 hybrid contribution 0.649 1.646 -0.597 1.867 sum 6.217 -6.544 2.462 9.356 Atomic orbital electron populations 1.70032 1.07050 1.26678 1.52034 1.25624 0.95491 1.01911 0.95390 0.85793 0.78967 0.80299 0.78067 1.20356 1.21365 1.19262 1.21528 0.93190 0.91620 1.49238 0.92422 1.18510 0.92037 0.90789 0.93448 0.98567 1.21538 0.99248 0.96456 0.97564 1.21614 0.97736 0.95041 1.00780 1.21881 0.95044 0.99129 0.90020 1.60275 1.28273 1.03522 1.39683 1.20374 0.93133 0.90619 0.92653 0.95740 1.19850 0.93723 0.97583 0.95584 1.20929 0.99679 0.98663 0.91450 1.21538 0.93543 1.02538 0.99530 1.18445 0.90167 1.00205 0.86847 1.84724 1.65218 1.45259 1.36790 1.21455 1.01097 1.02087 0.92558 1.20982 0.93845 0.98668 0.98736 0.93382 0.92374 0.95837 0.93259 0.91428 0.95591 0.88849 0.83801 0.85490 0.84180 0.73628 0.84343 0.86156 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.10 11.36 21.45 0.24 -52.85 16 2 C 0.01 0.77 5.31 84.66 0.45 1.22 16 3 Si 0.94 43.60 29.54 68.60 2.03 45.63 16 4 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 5 H -0.29 -13.25 7.11 99.48 0.71 -12.54 16 6 H -0.27 -12.01 7.11 99.48 0.71 -11.31 16 7 C -0.52 -27.73 7.99 25.60 0.20 -27.53 16 8 H 0.06 3.02 6.24 -2.91 -0.02 3.00 16 9 C 0.07 3.50 1.77 -11.49 -0.02 3.48 16 10 H 0.00 -0.22 8.14 -2.39 -0.02 -0.24 16 11 C -0.11 -5.19 5.03 30.68 0.15 -5.04 16 12 C -0.11 -4.27 6.09 30.65 0.19 -4.08 16 13 C 0.07 2.15 6.55 86.33 0.57 2.71 16 14 N -0.69 -23.31 5.75 -495.57 -2.85 -26.16 16 15 C 0.14 5.71 2.12 44.19 0.09 5.81 16 16 H 0.02 1.02 8.00 -2.39 -0.02 1.01 16 17 C -0.07 -2.55 4.29 -19.85 -0.09 -2.64 16 18 C -0.09 -3.17 9.31 22.25 0.21 -2.96 16 19 C -0.15 -4.83 9.99 22.37 0.22 -4.60 16 20 C 0.09 2.69 6.70 22.51 0.15 2.84 16 21 O -0.51 -12.98 13.50 -92.39 -1.25 -14.23 16 22 C -0.15 -4.89 9.99 22.36 0.22 -4.67 16 23 C -0.10 -3.73 8.45 22.25 0.19 -3.54 16 24 H 0.26 14.28 8.31 -92.71 -0.77 13.51 16 25 H 0.06 3.14 6.16 -2.39 -0.01 3.12 16 26 H 0.02 1.10 8.14 -2.39 -0.02 1.08 16 27 H 0.05 1.95 8.14 -2.39 -0.02 1.93 16 28 H 0.07 2.22 8.14 -2.39 -0.02 2.20 16 29 H 0.03 0.80 8.14 -2.39 -0.02 0.78 16 30 H 0.09 2.37 8.14 -2.38 -0.02 2.35 16 31 H 0.34 9.95 8.78 -89.69 -0.79 9.16 16 32 H 0.13 4.55 7.72 -2.91 -0.02 4.53 16 33 H 0.14 3.73 8.06 -2.91 -0.02 3.71 16 34 H 0.41 6.61 9.06 -74.05 -0.67 5.94 16 35 H 0.14 3.76 8.06 -2.91 -0.02 3.73 16 36 H 0.12 4.21 7.83 -2.91 -0.02 4.18 16 Total: -1.00 -62.68 292.15 0.34 -62.34 By element: Atomic # 1 Polarization: 24.65 SS G_CDS: -0.37 Total: 24.28 kcal Atomic # 6 Polarization: -41.55 SS G_CDS: 2.54 Total: -39.00 kcal Atomic # 7 Polarization: -76.41 SS G_CDS: -2.61 Total: -79.01 kcal Atomic # 8 Polarization: -12.98 SS G_CDS: -1.25 Total: -14.23 kcal Atomic # 14 Polarization: 43.60 SS G_CDS: 2.03 Total: 45.63 kcal Total: -62.68 0.34 -62.34 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259770096.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.973 kcal (2) G-P(sol) polarization free energy of solvation -62.681 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.708 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.344 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.336 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.363 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds