Wall clock time and date at job start Mon Mar 30 2020 05:49:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.29974 * 126.87466 * 2 1 4 4 O 1.20837 * 112.02998 * 180.02562 * 3 2 1 5 5 C 1.33940 * 111.90088 * 359.97438 * 4 3 2 6 6 C 1.36875 * 106.20957 * 0.02562 * 5 4 3 7 7 C 1.47911 * 128.19249 * 179.97438 * 6 5 4 8 8 N 1.31458 * 125.83607 * 180.02562 * 7 6 5 9 9 C 1.33962 * 109.26283 * 179.97438 * 8 7 6 10 10 C 1.34698 * 108.39577 * 359.97438 * 9 8 7 11 11 C 1.50703 * 126.48881 * 180.02562 * 10 9 8 12 12 C 1.53002 * 109.47052 * 84.97715 * 11 10 9 13 13 C 1.50703 * 109.47052 * 179.97438 * 12 11 10 14 14 H 1.07994 * 119.99835 * 0.02562 * 13 12 11 15 15 C 1.37883 * 119.99628 * 180.02562 * 13 12 11 16 16 N 1.31512 * 119.99966 * 0.02562 * 15 13 12 17 17 Si 1.86797 * 119.99882 * 180.02562 * 15 13 12 18 18 H 1.48496 * 109.47199 * 60.00003 * 17 15 13 19 19 H 1.48499 * 109.47172 * 180.02562 * 17 15 13 20 20 H 1.48503 * 109.46868 * 300.00204 * 17 15 13 21 21 N 1.36397 * 125.83805 * 359.73972 * 7 6 5 22 22 H 0.97004 * 126.50949 * 359.97438 * 21 7 6 23 23 H 1.09000 * 109.47372 * 269.98530 * 1 2 3 24 24 H 1.09000 * 109.46880 * 29.98175 * 1 2 3 25 25 H 1.09000 * 109.46907 * 149.97494 * 1 2 3 26 26 H 1.08000 * 126.89154 * 180.25516 * 5 4 3 27 27 H 1.08001 * 125.79947 * 180.02562 * 9 8 7 28 28 H 1.08998 * 109.47797 * 204.98285 * 11 10 9 29 29 H 1.09002 * 109.47010 * 324.98309 * 11 10 9 30 30 H 1.09006 * 109.47194 * 300.00587 * 12 11 10 31 31 H 1.09002 * 109.46728 * 60.00422 * 12 11 10 32 32 H 0.96998 * 119.99854 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2869 1.0397 0.0000 4 8 3.4550 0.7301 -0.0005 5 6 3.6195 -0.5991 -0.0004 6 6 2.3621 -1.1398 -0.0003 7 6 1.9811 -2.5690 -0.0006 8 7 0.7531 -3.0381 -0.0010 9 6 0.7916 -4.3772 -0.0018 10 6 2.0814 -4.7654 -0.0025 11 6 2.5904 -6.1838 -0.0041 12 6 2.6434 -6.7051 -1.4416 13 6 3.1530 -8.1233 -1.4432 14 1 3.4126 -8.6048 -0.5121 15 6 3.2877 -8.8060 -2.6336 16 7 2.9720 -8.2194 -3.7675 17 14 3.9187 -10.5642 -2.6356 18 1 3.0065 -11.4184 -1.8334 19 1 3.9714 -11.0696 -4.0310 20 1 5.2803 -10.6021 -2.0441 21 7 2.8438 -3.6254 -0.0061 22 1 3.8127 -3.5793 -0.0109 23 1 -0.3634 -0.0003 1.0276 24 1 -0.3633 0.8902 -0.5136 25 1 -0.3633 -0.8898 -0.5142 26 1 4.5564 -1.1364 0.0031 27 1 -0.0659 -5.0339 -0.0026 28 1 3.5900 -6.2118 0.4296 29 1 1.9210 -6.8107 0.5852 30 1 1.6437 -6.6772 -1.8753 31 1 3.3127 -6.0782 -2.0309 32 1 3.0671 -8.6995 -4.6049 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259786277.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:49:17 Heat of formation + Delta-G solvation = 98.079956 kcal Electronic energy + Delta-G solvation = -16764.048943 eV Core-core repulsion = 13921.363135 eV Total energy + Delta-G solvation = -2842.685808 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 247.106 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -45.05083 -41.65568 -35.16539 -34.09194 -32.61322 -32.28578 -31.24098 -28.73095 -28.15051 -25.32251 -23.39168 -21.88892 -21.12982 -20.73487 -20.00970 -17.98782 -17.74531 -16.83232 -16.25062 -15.16674 -14.84517 -14.47068 -14.00252 -13.32955 -13.28499 -13.02225 -12.95304 -12.90841 -12.47761 -12.28948 -11.42642 -11.29504 -11.01419 -10.79155 -10.39740 -10.20861 -9.92225 -9.77545 -9.73301 -9.61867 -9.24633 -8.45115 -7.67214 -6.09411 -4.14045 1.04640 1.77371 2.67273 2.90253 3.23795 3.27167 3.32603 3.34207 3.52990 3.91425 4.37385 4.37865 4.65049 4.85467 5.26324 5.28730 5.36899 5.55917 5.59369 5.60745 5.73276 5.83034 5.99255 6.20561 6.39126 6.61462 6.72748 7.03295 7.51698 7.53315 7.64176 7.88016 8.10459 8.22076 8.26761 8.92518 9.51012 11.01350 Molecular weight = 247.11amu Principal moments of inertia in cm(-1) A = 0.044776 B = 0.004033 C = 0.003907 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 625.185085 B = 6941.593518 C = 7164.267005 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.055 3.945 3 N -0.368 5.368 4 O 0.103 5.897 5 C -0.056 4.056 6 C -0.109 4.109 7 C 0.244 3.756 8 N -0.462 5.462 9 C -0.037 4.037 10 C 0.035 3.965 11 C -0.047 4.047 12 C 0.030 3.970 13 C -0.528 4.528 14 H 0.057 0.943 15 C 0.060 3.940 16 N -0.892 5.892 17 Si 0.894 3.106 18 H -0.275 1.275 19 H -0.287 1.287 20 H -0.277 1.277 21 N -0.561 5.561 22 H 0.417 0.583 23 H 0.080 0.920 24 H 0.071 0.929 25 H 0.100 0.900 26 H 0.218 0.782 27 H 0.173 0.827 28 H 0.059 0.941 29 H 0.080 0.920 30 H 0.023 0.977 31 H 0.014 0.986 32 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.207 13.025 8.195 15.390 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.105 4.105 3 N -0.074 5.074 4 O 0.040 5.960 5 C -0.140 4.140 6 C -0.114 4.114 7 C -0.015 4.015 8 N -0.182 5.182 9 C -0.185 4.185 10 C -0.082 4.082 11 C -0.086 4.086 12 C -0.008 4.008 13 C -0.566 4.566 14 H 0.075 0.925 15 C -0.142 4.142 16 N -0.531 5.531 17 Si 0.722 3.278 18 H -0.201 1.201 19 H -0.212 1.212 20 H -0.202 1.202 21 N -0.166 5.166 22 H 0.254 0.746 23 H 0.098 0.902 24 H 0.090 0.910 25 H 0.118 0.882 26 H 0.234 0.766 27 H 0.191 0.809 28 H 0.078 0.922 29 H 0.099 0.901 30 H 0.042 0.958 31 H 0.032 0.968 32 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -0.795 14.782 7.997 16.825 hybrid contribution 1.643 -2.427 -0.209 2.938 sum 0.848 12.355 7.788 14.629 Atomic orbital electron populations 1.20262 0.85052 1.04364 1.03665 1.23591 0.99369 0.86716 1.00842 1.73698 0.89274 1.23968 1.20503 1.84763 1.21441 1.22352 1.67410 1.25924 0.99881 0.84003 1.04179 1.18563 0.92492 0.90475 1.09911 1.19518 0.85644 0.85854 1.10483 1.70277 1.19363 1.10513 1.18065 1.22057 0.95847 0.90721 1.09843 1.22103 0.91898 0.89622 1.04539 1.20470 1.00005 0.85571 1.02551 1.19096 0.97878 0.95525 0.88273 1.21156 1.44377 0.98194 0.92895 0.92487 1.25017 0.95374 0.98250 0.95598 1.69955 1.48012 1.37350 0.97766 0.86630 0.79416 0.84731 0.77072 1.20088 1.21240 1.20244 1.43281 1.09751 1.06032 1.57510 0.74551 0.90152 0.90988 0.88159 0.76583 0.80947 0.92233 0.90129 0.95835 0.96801 0.92783 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.89 10.20 36.01 0.37 -0.52 16 2 C 0.06 0.75 7.37 -81.74 -0.60 0.15 16 3 N -0.37 -4.96 12.03 33.71 0.41 -4.56 16 4 O 0.10 1.20 11.17 17.46 0.19 1.40 16 5 C -0.06 -0.57 12.33 30.24 0.37 -0.19 16 6 C -0.11 -1.45 6.30 -104.80 -0.66 -2.11 16 7 C 0.24 3.77 8.03 -154.68 -1.24 2.53 16 8 N -0.46 -7.92 9.95 -11.21 -0.11 -8.03 16 9 C -0.04 -0.63 11.76 -17.88 -0.21 -0.84 16 10 C 0.04 0.60 6.49 -81.47 -0.53 0.07 16 11 C -0.05 -0.88 5.71 -27.88 -0.16 -1.04 16 12 C 0.03 0.72 4.95 -27.88 -0.14 0.58 16 13 C -0.53 -14.11 9.11 -34.44 -0.31 -14.42 16 14 H 0.06 1.45 7.74 -52.49 -0.41 1.05 16 15 C 0.06 1.64 5.46 -17.82 -0.10 1.55 16 16 N -0.89 -26.07 13.29 55.43 0.74 -25.34 16 17 Si 0.89 20.83 29.54 -169.99 -5.02 15.81 16 18 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 19 H -0.29 -6.67 7.11 56.52 0.40 -6.26 16 20 H -0.28 -6.32 7.11 56.52 0.40 -5.91 16 21 N -0.56 -8.23 6.23 -6.83 -0.04 -8.28 16 22 H 0.42 4.75 8.96 -40.82 -0.37 4.39 16 23 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 24 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 25 H 0.10 1.28 7.06 -51.93 -0.37 0.92 16 26 H 0.22 1.24 8.06 -52.49 -0.42 0.82 16 27 H 0.17 2.70 8.06 -52.49 -0.42 2.28 16 28 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 29 H 0.08 1.43 8.14 -51.93 -0.42 1.01 16 30 H 0.02 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.01 0.36 8.14 -51.93 -0.42 -0.07 16 32 H 0.26 7.27 8.31 -40.82 -0.34 6.94 16 LS Contribution 288.28 15.07 4.34 4.34 Total: -1.00 -31.75 288.28 -6.36 -38.11 By element: Atomic # 1 Polarization: 4.45 SS G_CDS: -3.66 Total: 0.79 kcal Atomic # 6 Polarization: -11.04 SS G_CDS: -3.21 Total: -14.25 kcal Atomic # 7 Polarization: -47.19 SS G_CDS: 0.99 Total: -46.20 kcal Atomic # 8 Polarization: 1.20 SS G_CDS: 0.19 Total: 1.40 kcal Atomic # 14 Polarization: 20.83 SS G_CDS: -5.02 Total: 15.81 kcal Total LS contribution 4.34 Total: 4.34 kcal Total: -31.75 -6.36 -38.11 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259786277.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 136.191 kcal (2) G-P(sol) polarization free energy of solvation -31.750 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 104.441 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.361 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.111 kcal (6) G-S(sol) free energy of system = (1) + (5) 98.080 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds