Wall clock time and date at job start Mon Mar 30 2020 05:49:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.29974 * 126.87466 * 2 1 4 4 O 1.20837 * 112.02998 * 180.02562 * 3 2 1 5 5 C 1.33940 * 111.90088 * 359.97438 * 4 3 2 6 6 C 1.36875 * 106.20957 * 0.02562 * 5 4 3 7 7 C 1.47911 * 128.19249 * 179.97438 * 6 5 4 8 8 N 1.31458 * 125.83607 * 180.02562 * 7 6 5 9 9 C 1.33962 * 109.26283 * 179.97438 * 8 7 6 10 10 C 1.34698 * 108.39577 * 359.97438 * 9 8 7 11 11 C 1.50703 * 126.48881 * 180.02562 * 10 9 8 12 12 C 1.53002 * 109.47052 * 84.97715 * 11 10 9 13 13 C 1.50703 * 109.47052 * 179.97438 * 12 11 10 14 14 H 1.07994 * 119.99835 * 0.02562 * 13 12 11 15 15 C 1.37883 * 119.99628 * 180.02562 * 13 12 11 16 16 N 1.31512 * 119.99966 * 0.02562 * 15 13 12 17 17 Si 1.86797 * 119.99882 * 180.02562 * 15 13 12 18 18 H 1.48496 * 109.47199 * 60.00003 * 17 15 13 19 19 H 1.48499 * 109.47172 * 180.02562 * 17 15 13 20 20 H 1.48503 * 109.46868 * 300.00204 * 17 15 13 21 21 N 1.36397 * 125.83805 * 359.73972 * 7 6 5 22 22 H 0.97004 * 126.50949 * 359.97438 * 21 7 6 23 23 H 1.09000 * 109.47372 * 269.98530 * 1 2 3 24 24 H 1.09000 * 109.46880 * 29.98175 * 1 2 3 25 25 H 1.09000 * 109.46907 * 149.97494 * 1 2 3 26 26 H 1.08000 * 126.89154 * 180.25516 * 5 4 3 27 27 H 1.08001 * 125.79947 * 180.02562 * 9 8 7 28 28 H 1.08998 * 109.47797 * 204.98285 * 11 10 9 29 29 H 1.09002 * 109.47010 * 324.98309 * 11 10 9 30 30 H 1.09006 * 109.47194 * 300.00587 * 12 11 10 31 31 H 1.09002 * 109.46728 * 60.00422 * 12 11 10 32 32 H 0.96998 * 119.99854 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2869 1.0397 0.0000 4 8 3.4550 0.7301 -0.0005 5 6 3.6195 -0.5991 -0.0004 6 6 2.3621 -1.1398 -0.0003 7 6 1.9811 -2.5690 -0.0006 8 7 0.7531 -3.0381 -0.0010 9 6 0.7916 -4.3772 -0.0018 10 6 2.0814 -4.7654 -0.0025 11 6 2.5904 -6.1838 -0.0041 12 6 2.6434 -6.7051 -1.4416 13 6 3.1530 -8.1233 -1.4432 14 1 3.4126 -8.6048 -0.5121 15 6 3.2877 -8.8060 -2.6336 16 7 2.9720 -8.2194 -3.7675 17 14 3.9187 -10.5642 -2.6356 18 1 3.0065 -11.4184 -1.8334 19 1 3.9714 -11.0696 -4.0310 20 1 5.2803 -10.6021 -2.0441 21 7 2.8438 -3.6254 -0.0061 22 1 3.8127 -3.5793 -0.0109 23 1 -0.3634 -0.0003 1.0276 24 1 -0.3633 0.8902 -0.5136 25 1 -0.3633 -0.8898 -0.5142 26 1 4.5564 -1.1364 0.0031 27 1 -0.0659 -5.0339 -0.0026 28 1 3.5900 -6.2118 0.4296 29 1 1.9210 -6.8107 0.5852 30 1 1.6437 -6.6772 -1.8753 31 1 3.3127 -6.0782 -2.0309 32 1 3.0671 -8.6995 -4.6049 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259786277.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:49:16 Heat of formation + Delta-G solvation = 78.540036 kcal Electronic energy + Delta-G solvation = -16764.896257 eV Core-core repulsion = 13921.363135 eV Total energy + Delta-G solvation = -2843.533123 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 247.106 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -46.03206 -42.89876 -36.32235 -35.74188 -33.89905 -33.73138 -32.61038 -29.87181 -29.47355 -26.98495 -24.67132 -23.37160 -22.35969 -21.90174 -21.26524 -19.12282 -18.72424 -18.47621 -17.72164 -16.55709 -16.22701 -15.96952 -15.20214 -14.80958 -14.50494 -14.27169 -14.21618 -14.09829 -13.97400 -13.40027 -13.16548 -12.81329 -12.58612 -12.31902 -11.94513 -11.82259 -11.33217 -11.27596 -11.00719 -10.95272 -10.78035 -10.53830 -8.95608 -8.18331 -6.30522 0.09774 0.73337 1.42638 1.45470 1.46149 1.54022 1.86752 2.26151 2.29599 2.43443 2.90733 3.15605 3.46115 3.63628 3.89012 4.11150 4.25549 4.47077 4.49359 4.66096 4.68351 4.70662 4.80292 4.85463 5.06632 5.15923 5.27677 5.50532 5.71982 5.72989 5.83981 6.20960 6.41966 6.86980 6.96993 7.19139 7.39711 8.92659 Molecular weight = 247.11amu Principal moments of inertia in cm(-1) A = 0.044776 B = 0.004033 C = 0.003907 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 625.185085 B = 6941.593518 C = 7164.267005 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C 0.044 3.956 3 N -0.385 5.385 4 O 0.106 5.894 5 C -0.014 4.014 6 C -0.149 4.149 7 C 0.260 3.740 8 N -0.489 5.489 9 C -0.048 4.048 10 C 0.016 3.984 11 C -0.028 4.028 12 C 0.036 3.964 13 C -0.542 4.542 14 H 0.069 0.931 15 C 0.001 3.999 16 N -0.934 5.934 17 Si 0.964 3.036 18 H -0.266 1.266 19 H -0.288 1.288 20 H -0.265 1.265 21 N -0.551 5.551 22 H 0.432 0.568 23 H 0.088 0.912 24 H 0.084 0.916 25 H 0.085 0.915 26 H 0.265 0.735 27 H 0.178 0.822 28 H 0.075 0.925 29 H 0.088 0.912 30 H -0.008 1.008 31 H -0.012 1.012 32 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.707 13.064 9.306 16.130 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.116 4.116 3 N -0.093 5.093 4 O 0.045 5.955 5 C -0.098 4.098 6 C -0.155 4.155 7 C 0.000 4.000 8 N -0.209 5.209 9 C -0.196 4.196 10 C -0.100 4.100 11 C -0.067 4.067 12 C -0.002 4.002 13 C -0.580 4.580 14 H 0.087 0.913 15 C -0.197 4.197 16 N -0.575 5.575 17 Si 0.788 3.212 18 H -0.191 1.191 19 H -0.214 1.214 20 H -0.190 1.190 21 N -0.157 5.157 22 H 0.273 0.727 23 H 0.107 0.893 24 H 0.103 0.897 25 H 0.104 0.896 26 H 0.280 0.720 27 H 0.195 0.805 28 H 0.094 0.906 29 H 0.107 0.893 30 H 0.010 0.990 31 H 0.006 0.994 32 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 0.724 14.823 9.131 17.425 hybrid contribution 1.205 -2.305 -0.555 2.659 sum 1.930 12.519 8.575 15.296 Atomic orbital electron populations 1.20259 0.84494 1.04231 1.04169 1.23887 1.00154 0.86928 1.00640 1.73710 0.89792 1.24197 1.21605 1.84756 1.20816 1.23087 1.66826 1.26739 1.00449 0.83160 0.99472 1.18635 0.94025 0.89426 1.13380 1.19837 0.85336 0.86739 1.08106 1.70288 1.20579 1.10345 1.19726 1.22295 0.96387 0.91210 1.09675 1.21766 0.92132 0.89569 1.06581 1.20118 1.01305 0.86541 0.98739 1.18934 0.95134 0.94641 0.91470 1.21666 1.43647 0.99354 0.93354 0.91286 1.25960 0.95656 1.02805 0.95256 1.70104 1.49633 1.39260 0.98454 0.85518 0.79318 0.79309 0.77018 1.19073 1.21405 1.18973 1.43167 1.10525 1.05073 1.56934 0.72709 0.89321 0.89745 0.89584 0.71975 0.80470 0.90619 0.89312 0.98955 0.99387 0.92887 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.70 10.20 71.24 0.73 -0.97 16 2 C 0.04 1.14 7.37 43.89 0.32 1.46 16 3 N -0.39 -9.78 12.03 -48.35 -0.58 -10.36 16 4 O 0.11 2.21 11.17 72.68 0.81 3.02 16 5 C -0.01 -0.24 12.33 67.50 0.83 0.60 16 6 C -0.15 -3.69 6.30 -19.98 -0.13 -3.82 16 7 C 0.26 7.74 8.03 136.56 1.10 8.83 16 8 N -0.49 -16.69 9.95 -189.38 -1.88 -18.58 16 9 C -0.05 -1.66 11.76 83.56 0.98 -0.68 16 10 C 0.02 0.55 6.49 40.92 0.27 0.82 16 11 C -0.03 -1.04 5.71 29.85 0.17 -0.87 16 12 C 0.04 1.76 4.95 29.85 0.15 1.91 16 13 C -0.54 -28.87 9.11 25.60 0.23 -28.64 16 14 H 0.07 3.43 7.74 -2.91 -0.02 3.40 16 15 C 0.00 0.06 5.46 84.66 0.46 0.53 16 16 N -0.93 -55.56 13.29 21.45 0.28 -55.27 16 17 Si 0.96 42.37 29.54 68.60 2.03 44.39 16 18 H -0.27 -11.20 7.11 99.48 0.71 -10.49 16 19 H -0.29 -12.64 7.11 99.48 0.71 -11.93 16 20 H -0.26 -11.06 7.11 99.48 0.71 -10.35 16 21 N -0.55 -15.32 6.23 -175.52 -1.09 -16.41 16 22 H 0.43 8.79 8.96 -92.71 -0.83 7.96 16 23 H 0.09 1.83 8.14 -2.39 -0.02 1.82 16 24 H 0.08 1.66 8.14 -2.39 -0.02 1.64 16 25 H 0.09 2.22 7.06 -2.39 -0.02 2.21 16 26 H 0.26 1.68 8.06 -2.91 -0.02 1.65 16 27 H 0.18 5.69 8.06 -2.91 -0.02 5.66 16 28 H 0.08 2.49 8.14 -2.39 -0.02 2.47 16 29 H 0.09 3.07 8.14 -2.39 -0.02 3.05 16 30 H -0.01 -0.44 8.14 -2.38 -0.02 -0.46 16 31 H -0.01 -0.66 8.14 -2.39 -0.02 -0.68 16 32 H 0.26 14.79 8.31 -92.71 -0.77 14.02 16 Total: -1.00 -69.08 288.28 4.99 -64.09 By element: Atomic # 1 Polarization: 9.64 SS G_CDS: 0.32 Total: 9.96 kcal Atomic # 6 Polarization: -25.95 SS G_CDS: 5.11 Total: -20.83 kcal Atomic # 7 Polarization: -97.35 SS G_CDS: -3.28 Total: -100.63 kcal Atomic # 8 Polarization: 2.21 SS G_CDS: 0.81 Total: 3.02 kcal Atomic # 14 Polarization: 42.37 SS G_CDS: 2.03 Total: 44.39 kcal Total: -69.08 4.99 -64.09 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259786277.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 142.630 kcal (2) G-P(sol) polarization free energy of solvation -69.083 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.547 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.993 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.090 kcal (6) G-S(sol) free energy of system = (1) + (5) 78.540 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds