Wall clock time and date at job start Mon Mar 30 2020 06:10:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86805 * 120.00243 * 2 1 4 4 H 1.48500 * 109.47075 * 179.97438 * 3 2 1 5 5 H 1.48503 * 109.46818 * 299.99795 * 3 2 1 6 6 H 1.48499 * 109.47248 * 59.99917 * 3 2 1 7 7 C 1.37876 * 120.00147 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00269 * 180.02562 * 7 2 1 9 9 C 1.50707 * 119.99580 * 0.02562 * 7 2 1 10 10 C 1.52998 * 109.46919 * 180.02562 * 9 7 2 11 11 C 1.53008 * 109.47170 * 180.02562 * 10 9 7 12 12 C 1.50695 * 109.47123 * 179.97438 * 11 10 9 13 13 C 1.36647 * 119.74325 * 99.99976 * 12 11 10 14 14 C 1.39597 * 119.79337 * 179.97438 * 13 12 11 15 15 C 1.46538 * 133.99090 * 179.97438 * 14 13 12 16 16 C 1.34206 * 107.00345 * 180.02562 * 15 14 13 17 17 N 1.36901 * 109.93102 * 0.26691 * 16 15 14 18 18 H 0.96998 * 125.06642 * 179.73496 * 17 16 15 19 19 C 1.37694 * 109.86793 * 359.55753 * 17 16 15 20 20 C 1.39082 * 133.48423 * 180.09820 * 19 17 16 21 21 C 1.37989 * 119.75969 * 180.36511 * 20 19 17 22 22 F 1.35107 * 119.69283 * 179.97438 * 21 20 19 23 23 H 0.97000 * 119.99269 * 0.02562 * 1 2 3 24 24 H 1.08997 * 109.46888 * 60.00221 * 9 7 2 25 25 H 1.09003 * 109.47277 * 299.99879 * 9 7 2 26 26 H 1.09003 * 109.47094 * 59.99935 * 10 9 7 27 27 H 1.09002 * 109.47516 * 300.00075 * 10 9 7 28 28 H 1.08997 * 109.46795 * 60.00066 * 11 10 9 29 29 H 1.08999 * 109.46472 * 300.00185 * 11 10 9 30 30 H 1.07994 * 120.10456 * 359.97438 * 13 12 11 31 31 H 1.08001 * 126.49623 * 0.02562 * 15 14 13 32 32 H 1.08002 * 125.03089 * 179.97438 * 16 15 14 33 33 H 1.08002 * 120.11864 * 0.38742 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8905 2.3964 -1.2126 6 1 1.8905 2.3965 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2509 -2.4991 0.0005 10 6 2.2452 -3.6621 0.0018 11 6 1.4801 -4.9871 0.0012 12 6 2.4594 -6.1326 0.0018 13 6 2.7425 -6.7818 1.1704 14 6 3.6490 -7.8433 1.1721 15 6 4.1700 -8.7351 2.2116 16 6 5.0280 -9.5761 1.6134 17 7 5.1039 -9.2922 0.2763 18 1 5.6614 -9.7632 -0.3626 19 6 4.2678 -8.2411 -0.0272 20 6 3.9663 -7.5675 -1.2060 21 6 3.0674 -6.5208 -1.1861 22 9 2.7759 -5.8670 -2.3319 23 1 -0.4849 0.8401 -0.0004 24 1 0.6247 -2.5570 -0.8897 25 1 0.6239 -2.5567 0.8903 26 1 2.8711 -3.6039 0.8923 27 1 2.8726 -3.6048 -0.8877 28 1 0.8545 -5.0450 -0.8895 29 1 0.8525 -5.0446 0.8905 30 1 2.2664 -6.4746 2.0898 31 1 3.9124 -8.7188 3.2603 32 1 5.5805 -10.3577 2.1137 33 1 4.4339 -7.8628 -2.1337 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259786316.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:10:28 Heat of formation + Delta-G solvation = -10.782119 kcal Electronic energy + Delta-G solvation = -16756.010724 eV Core-core repulsion = 13888.684341 eV Total energy + Delta-G solvation = -2867.326383 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 247.107 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -48.60033 -41.21498 -37.26949 -34.24281 -32.37905 -31.74673 -29.64793 -28.41919 -26.45159 -23.62911 -22.67515 -21.18626 -20.57146 -19.84058 -18.40259 -16.99256 -16.24209 -15.75259 -15.40790 -14.90316 -14.38686 -14.28864 -14.11536 -13.57025 -13.42533 -13.39451 -12.63880 -12.39747 -12.24210 -11.63957 -11.21248 -11.10843 -10.94973 -10.68815 -10.45823 -10.39576 -9.75515 -9.57550 -9.25170 -8.99410 -8.27411 -7.96007 -7.75011 -5.92546 -3.94097 1.02261 1.55389 2.59397 2.94801 3.36108 3.43177 3.48177 3.80651 4.52509 4.52708 4.64441 4.72316 5.09810 5.15548 5.27438 5.43217 5.46855 5.69116 5.82009 5.89213 6.14897 6.16681 6.22313 6.44204 6.53820 6.65496 6.69559 6.91712 7.00278 7.11912 7.25482 7.37876 7.77330 7.92965 8.08824 8.52257 9.13348 9.69475 11.18918 Molecular weight = 247.11amu Principal moments of inertia in cm(-1) A = 0.037487 B = 0.004269 C = 0.004141 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 746.750712 B = 6557.734983 C = 6760.605698 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.055 3.945 3 Si 0.890 3.110 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.517 4.517 8 H 0.055 0.945 9 C 0.020 3.980 10 C -0.104 4.104 11 C -0.079 4.079 12 C -0.122 4.122 13 C -0.045 4.045 14 C -0.118 4.118 15 C -0.197 4.197 16 C 0.043 3.957 17 N -0.597 5.597 18 H 0.414 0.586 19 C 0.109 3.891 20 C -0.174 4.174 21 C 0.130 3.870 22 F -0.132 7.132 23 H 0.259 0.741 24 H 0.016 0.984 25 H 0.016 0.984 26 H 0.048 0.952 27 H 0.048 0.952 28 H 0.070 0.930 29 H 0.071 0.929 30 H 0.133 0.867 31 H 0.147 0.853 32 H 0.169 0.831 33 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.006 -20.787 1.764 22.722 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.145 4.145 3 Si 0.718 3.282 4 H -0.198 1.198 5 H -0.211 1.211 6 H -0.211 1.211 7 C -0.555 4.555 8 H 0.073 0.927 9 C -0.017 4.017 10 C -0.141 4.141 11 C -0.117 4.117 12 C -0.124 4.124 13 C -0.063 4.063 14 C -0.123 4.123 15 C -0.222 4.222 16 C -0.083 4.083 17 N -0.201 5.201 18 H 0.250 0.750 19 C 0.002 3.998 20 C -0.196 4.196 21 C 0.109 3.891 22 F -0.110 7.110 23 H 0.068 0.932 24 H 0.035 0.965 25 H 0.034 0.966 26 H 0.067 0.933 27 H 0.067 0.933 28 H 0.088 0.912 29 H 0.090 0.910 30 H 0.151 0.849 31 H 0.165 0.835 32 H 0.187 0.813 33 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 8.931 -20.721 1.668 22.625 hybrid contribution 0.745 0.787 -0.539 1.210 sum 9.676 -19.934 1.129 22.187 Atomic orbital electron populations 1.69981 1.06024 1.26341 1.51294 1.25022 0.94834 0.99183 0.95482 0.86563 0.80168 0.83928 0.77514 1.19766 1.21053 1.21057 1.21322 0.93088 0.91141 1.49978 0.92703 1.19121 0.94021 0.91301 0.97223 1.21624 0.99039 0.92962 1.00492 1.20694 0.95897 0.92278 1.02797 1.19735 1.01276 0.99770 0.91613 1.20079 0.95732 0.93014 0.97483 1.19241 1.01019 0.99161 0.92875 1.21710 1.02958 0.98819 0.98721 1.21775 1.01990 1.01670 0.82844 1.41718 1.39371 1.30114 1.08890 0.74955 1.17739 0.95447 0.91839 0.94745 1.19700 1.03742 0.99231 0.96893 1.17080 0.97342 0.92542 0.82128 1.91512 1.91996 1.79756 1.47736 0.93153 0.96537 0.96559 0.93292 0.93333 0.91183 0.90993 0.84917 0.83523 0.81349 0.85306 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.62 13.29 55.43 0.74 -26.88 16 2 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 3 Si 0.89 22.24 29.54 -169.99 -5.02 17.22 16 4 H -0.27 -6.69 7.11 56.52 0.40 -6.29 16 5 H -0.28 -7.01 7.11 56.52 0.40 -6.61 16 6 H -0.28 -6.99 7.11 56.52 0.40 -6.59 16 7 C -0.52 -15.20 9.11 -34.44 -0.31 -15.51 16 8 H 0.05 1.58 7.74 -52.49 -0.41 1.17 16 9 C 0.02 0.55 4.97 -27.88 -0.14 0.41 16 10 C -0.10 -2.27 5.13 -26.73 -0.14 -2.41 16 11 C -0.08 -1.45 5.04 -27.88 -0.14 -1.59 16 12 C -0.12 -2.00 5.11 -104.93 -0.54 -2.54 16 13 C -0.04 -0.65 9.65 -39.65 -0.38 -1.03 16 14 C -0.12 -1.60 6.37 -105.12 -0.67 -2.27 16 15 C -0.20 -2.08 11.08 -37.66 -0.42 -2.50 16 16 C 0.04 0.36 11.82 -16.71 -0.20 0.16 16 17 N -0.60 -5.44 6.07 -10.64 -0.06 -5.51 16 18 H 0.41 2.43 8.96 -40.82 -0.37 2.06 16 19 C 0.11 1.39 7.27 -83.99 -0.61 0.78 16 20 C -0.17 -2.35 10.05 -39.36 -0.40 -2.74 16 21 C 0.13 2.08 7.22 -39.40 -0.28 1.79 16 22 F -0.13 -2.29 16.61 2.25 0.04 -2.25 16 23 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 24 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 25 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 26 H 0.05 1.06 8.14 -51.93 -0.42 0.63 16 27 H 0.05 1.09 8.14 -51.93 -0.42 0.67 16 28 H 0.07 1.30 7.92 -51.93 -0.41 0.89 16 29 H 0.07 1.23 7.97 -51.93 -0.41 0.82 16 30 H 0.13 1.73 8.01 -52.49 -0.42 1.31 16 31 H 0.15 1.25 8.06 -52.49 -0.42 0.83 16 32 H 0.17 0.74 8.06 -52.49 -0.42 0.31 16 33 H 0.13 1.43 8.06 -52.49 -0.42 1.01 16 LS Contribution 290.78 15.07 4.38 4.38 Total: -1.00 -33.18 290.78 -8.36 -41.55 By element: Atomic # 1 Polarization: 1.53 SS G_CDS: -4.11 Total: -2.58 kcal Atomic # 6 Polarization: -21.60 SS G_CDS: -4.32 Total: -25.92 kcal Atomic # 7 Polarization: -33.06 SS G_CDS: 0.67 Total: -32.39 kcal Atomic # 9 Polarization: -2.29 SS G_CDS: 0.04 Total: -2.25 kcal Atomic # 14 Polarization: 22.24 SS G_CDS: -5.02 Total: 17.22 kcal Total LS contribution 4.38 Total: 4.38 kcal Total: -33.18 -8.36 -41.55 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259786316.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.765 kcal (2) G-P(sol) polarization free energy of solvation -33.184 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.418 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.364 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.547 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.782 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds