Wall clock time and date at job start Mon Mar 30 2020 06:10:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86805 * 120.00243 * 2 1 4 4 H 1.48500 * 109.47075 * 179.97438 * 3 2 1 5 5 H 1.48503 * 109.46818 * 299.99795 * 3 2 1 6 6 H 1.48499 * 109.47248 * 59.99917 * 3 2 1 7 7 C 1.37876 * 120.00147 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00269 * 180.02562 * 7 2 1 9 9 C 1.50707 * 119.99580 * 0.02562 * 7 2 1 10 10 C 1.52998 * 109.46919 * 180.02562 * 9 7 2 11 11 C 1.53008 * 109.47170 * 180.02562 * 10 9 7 12 12 C 1.50695 * 109.47123 * 179.97438 * 11 10 9 13 13 C 1.36647 * 119.74325 * 99.99976 * 12 11 10 14 14 C 1.39597 * 119.79337 * 179.97438 * 13 12 11 15 15 C 1.46538 * 133.99090 * 179.97438 * 14 13 12 16 16 C 1.34206 * 107.00345 * 180.02562 * 15 14 13 17 17 N 1.36901 * 109.93102 * 0.26691 * 16 15 14 18 18 H 0.96998 * 125.06642 * 179.73496 * 17 16 15 19 19 C 1.37694 * 109.86793 * 359.55753 * 17 16 15 20 20 C 1.39082 * 133.48423 * 180.09820 * 19 17 16 21 21 C 1.37989 * 119.75969 * 180.36511 * 20 19 17 22 22 F 1.35107 * 119.69283 * 179.97438 * 21 20 19 23 23 H 0.97000 * 119.99269 * 0.02562 * 1 2 3 24 24 H 1.08997 * 109.46888 * 60.00221 * 9 7 2 25 25 H 1.09003 * 109.47277 * 299.99879 * 9 7 2 26 26 H 1.09003 * 109.47094 * 59.99935 * 10 9 7 27 27 H 1.09002 * 109.47516 * 300.00075 * 10 9 7 28 28 H 1.08997 * 109.46795 * 60.00066 * 11 10 9 29 29 H 1.08999 * 109.46472 * 300.00185 * 11 10 9 30 30 H 1.07994 * 120.10456 * 359.97438 * 13 12 11 31 31 H 1.08001 * 126.49623 * 0.02562 * 15 14 13 32 32 H 1.08002 * 125.03089 * 179.97438 * 16 15 14 33 33 H 1.08002 * 120.11864 * 0.38742 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8905 2.3964 -1.2126 6 1 1.8905 2.3965 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2509 -2.4991 0.0005 10 6 2.2452 -3.6621 0.0018 11 6 1.4801 -4.9871 0.0012 12 6 2.4594 -6.1326 0.0018 13 6 2.7425 -6.7818 1.1704 14 6 3.6490 -7.8433 1.1721 15 6 4.1700 -8.7351 2.2116 16 6 5.0280 -9.5761 1.6134 17 7 5.1039 -9.2922 0.2763 18 1 5.6614 -9.7632 -0.3626 19 6 4.2678 -8.2411 -0.0272 20 6 3.9663 -7.5675 -1.2060 21 6 3.0674 -6.5208 -1.1861 22 9 2.7759 -5.8670 -2.3319 23 1 -0.4849 0.8401 -0.0004 24 1 0.6247 -2.5570 -0.8897 25 1 0.6239 -2.5567 0.8903 26 1 2.8711 -3.6039 0.8923 27 1 2.8726 -3.6048 -0.8877 28 1 0.8545 -5.0450 -0.8895 29 1 0.8525 -5.0446 0.8905 30 1 2.2664 -6.4746 2.0898 31 1 3.9124 -8.7188 3.2603 32 1 5.5805 -10.3577 2.1137 33 1 4.4339 -7.8628 -2.1337 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259786316.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:10:27 Heat of formation + Delta-G solvation = -29.770784 kcal Electronic energy + Delta-G solvation = -16756.834134 eV Core-core repulsion = 13888.684341 eV Total energy + Delta-G solvation = -2868.149794 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 247.107 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -49.84199 -42.10341 -38.42389 -36.06907 -34.22386 -32.80184 -31.16263 -29.35985 -28.14540 -25.36431 -23.82550 -22.49601 -21.84229 -21.16830 -19.34943 -18.47069 -18.02178 -16.89717 -16.67354 -16.47934 -16.09724 -15.48106 -15.18513 -14.86213 -14.63230 -14.30766 -14.26042 -13.96858 -13.64587 -13.15951 -12.94015 -12.76451 -12.61474 -12.32853 -12.02212 -11.89044 -11.47377 -11.32338 -11.09102 -10.68638 -10.55472 -9.05385 -8.65189 -8.19452 -6.30918 0.01552 0.44161 1.39275 1.40142 1.53824 1.81177 2.17304 2.41406 2.72947 3.12911 3.46641 3.65908 3.82111 3.99680 4.24280 4.30365 4.38932 4.51040 4.61760 4.71385 4.83271 4.94842 5.01244 5.12407 5.17532 5.23673 5.25614 5.51926 5.54149 5.71035 5.77168 5.78280 5.86045 6.12289 6.26519 6.72823 6.85310 7.38000 8.92554 Molecular weight = 247.11amu Principal moments of inertia in cm(-1) A = 0.037487 B = 0.004269 C = 0.004141 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 746.750712 B = 6557.734983 C = 6760.605698 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.001 4.001 3 Si 0.967 3.033 4 H -0.264 1.264 5 H -0.277 1.277 6 H -0.274 1.274 7 C -0.545 4.545 8 H 0.056 0.944 9 C 0.024 3.976 10 C -0.088 4.088 11 C -0.069 4.069 12 C -0.142 4.142 13 C -0.050 4.050 14 C -0.134 4.134 15 C -0.225 4.225 16 C 0.073 3.927 17 N -0.584 5.584 18 H 0.432 0.568 19 C 0.098 3.902 20 C -0.162 4.162 21 C 0.094 3.906 22 F -0.149 7.149 23 H 0.264 0.736 24 H -0.010 1.010 25 H -0.002 1.002 26 H 0.051 0.949 27 H 0.038 0.962 28 H 0.058 0.942 29 H 0.079 0.921 30 H 0.141 0.859 31 H 0.164 0.836 32 H 0.219 0.781 33 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.394 -22.482 2.685 25.347 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.198 4.198 3 Si 0.791 3.209 4 H -0.188 1.188 5 H -0.202 1.202 6 H -0.200 1.200 7 C -0.583 4.583 8 H 0.074 0.926 9 C -0.013 4.013 10 C -0.125 4.125 11 C -0.106 4.106 12 C -0.144 4.144 13 C -0.069 4.069 14 C -0.139 4.139 15 C -0.249 4.249 16 C -0.053 4.053 17 N -0.188 5.188 18 H 0.272 0.728 19 C -0.011 4.011 20 C -0.183 4.183 21 C 0.074 3.926 22 F -0.128 7.128 23 H 0.073 0.927 24 H 0.008 0.992 25 H 0.016 0.984 26 H 0.070 0.930 27 H 0.057 0.943 28 H 0.077 0.923 29 H 0.098 0.902 30 H 0.159 0.841 31 H 0.181 0.819 32 H 0.235 0.765 33 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges 11.339 -22.448 2.578 25.281 hybrid contribution 0.058 1.154 -0.765 1.386 sum 11.398 -21.294 1.813 24.220 Atomic orbital electron populations 1.70107 1.07771 1.27734 1.51717 1.25995 0.95822 1.03367 0.94642 0.85380 0.78951 0.78637 0.77964 1.18805 1.20230 1.19969 1.21724 0.93423 0.92552 1.50564 0.92581 1.19028 0.94382 0.92944 0.94942 1.21376 0.97911 0.93247 1.00001 1.20457 0.96073 0.91466 1.02611 1.19524 1.02042 1.00042 0.92824 1.20194 0.96178 0.93452 0.97061 1.19634 1.00604 0.99071 0.94598 1.22033 1.04311 0.99255 0.99348 1.22557 0.99925 1.00869 0.81985 1.41835 1.38331 1.28778 1.09878 0.72805 1.17827 0.96191 0.92880 0.94178 1.19861 1.02307 0.97868 0.98266 1.17319 0.99400 0.94259 0.81607 1.91457 1.92419 1.80396 1.48505 0.92701 0.99192 0.98405 0.93035 0.94318 0.92307 0.90249 0.84098 0.81866 0.76494 0.83090 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -58.70 13.29 21.45 0.28 -58.42 16 2 C 0.00 -0.04 5.46 84.65 0.46 0.42 16 3 Si 0.97 45.94 29.54 68.60 2.03 47.97 16 4 H -0.26 -12.06 7.11 99.48 0.71 -11.35 16 5 H -0.28 -12.75 7.11 99.48 0.71 -12.05 16 6 H -0.27 -12.53 7.11 99.48 0.71 -11.82 16 7 C -0.54 -32.89 9.11 25.60 0.23 -32.66 16 8 H 0.06 3.29 7.74 -2.91 -0.02 3.26 16 9 C 0.02 1.36 4.97 29.85 0.15 1.51 16 10 C -0.09 -4.03 5.13 30.60 0.16 -3.87 16 11 C -0.07 -2.65 5.04 29.85 0.15 -2.50 16 12 C -0.14 -4.81 5.11 -20.06 -0.10 -4.91 16 13 C -0.05 -1.47 9.65 22.23 0.21 -1.26 16 14 C -0.13 -3.42 6.37 -20.19 -0.13 -3.55 16 15 C -0.23 -4.05 11.08 23.52 0.26 -3.79 16 16 C 0.07 0.86 11.82 82.98 0.98 1.84 16 17 N -0.58 -8.30 6.07 -187.59 -1.14 -9.44 16 18 H 0.43 3.14 8.96 -92.71 -0.83 2.31 16 19 C 0.10 2.28 7.27 39.02 0.28 2.56 16 20 C -0.16 -4.20 10.05 22.41 0.23 -3.98 16 21 C 0.09 3.11 7.22 22.39 0.16 3.27 16 22 F -0.15 -5.45 16.61 44.97 0.75 -4.70 16 23 H 0.26 15.47 8.31 -92.71 -0.77 14.70 16 24 H -0.01 -0.63 8.14 -2.39 -0.02 -0.65 16 25 H 0.00 -0.14 8.14 -2.39 -0.02 -0.16 16 26 H 0.05 2.30 8.14 -2.39 -0.02 2.28 16 27 H 0.04 1.82 8.14 -2.39 -0.02 1.80 16 28 H 0.06 2.34 7.92 -2.39 -0.02 2.32 16 29 H 0.08 2.85 7.97 -2.39 -0.02 2.83 16 30 H 0.14 3.69 8.01 -2.91 -0.02 3.66 16 31 H 0.16 2.28 8.06 -2.91 -0.02 2.26 16 32 H 0.22 0.43 8.06 -2.91 -0.02 0.41 16 33 H 0.15 3.09 8.06 -2.91 -0.02 3.07 16 Total: -1.00 -73.89 290.78 5.25 -68.64 By element: Atomic # 1 Polarization: 2.58 SS G_CDS: 0.29 Total: 2.87 kcal Atomic # 6 Polarization: -49.96 SS G_CDS: 3.05 Total: -46.92 kcal Atomic # 7 Polarization: -67.01 SS G_CDS: -0.85 Total: -67.86 kcal Atomic # 9 Polarization: -5.45 SS G_CDS: 0.75 Total: -4.70 kcal Atomic # 14 Polarization: 45.94 SS G_CDS: 2.03 Total: 47.97 kcal Total: -73.89 5.25 -68.64 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259786316.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.869 kcal (2) G-P(sol) polarization free energy of solvation -73.893 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.024 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.253 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.640 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.771 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds