Wall clock time and date at job start Mon Mar 30 2020 05:49:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.35052 * 126.46398 * 2 1 4 4 N 1.33582 * 108.42627 * 179.74138 * 3 2 1 5 5 C 1.31649 * 109.24314 * 0.39780 * 4 3 2 6 6 C 1.47274 * 125.86120 * 179.86727 * 5 4 3 7 7 N 1.31397 * 125.74209 * 180.02562 * 6 5 4 8 8 C 1.34018 * 108.64849 * 180.17164 * 7 6 5 9 9 C 1.34667 * 107.86897 * 359.56302 * 8 7 6 10 10 C 1.50703 * 126.35502 * 180.30143 * 9 8 7 11 11 C 1.52997 * 109.47012 * 89.99865 * 10 9 8 12 12 C 1.50703 * 109.47012 * 179.97438 * 11 10 9 13 13 H 1.08001 * 119.99946 * 0.02562 * 12 11 10 14 14 C 1.37879 * 120.00143 * 180.02562 * 12 11 10 15 15 N 1.31515 * 119.99860 * 359.97438 * 14 12 11 16 16 Si 1.86798 * 119.99996 * 180.02562 * 14 12 11 17 17 H 1.48498 * 109.47110 * 59.99613 * 16 14 12 18 18 H 1.48500 * 109.47336 * 179.97438 * 16 14 12 19 19 H 1.48498 * 109.46984 * 299.99653 * 16 14 12 20 20 O 1.34528 * 125.74182 * 359.69170 * 6 5 4 21 21 N 1.36630 * 108.27520 * 359.60474 * 5 4 3 22 22 H 0.96998 * 126.51432 * 180.24383 * 21 5 4 23 23 H 1.09005 * 109.47059 * 270.02460 * 1 2 3 24 24 H 1.08995 * 109.47338 * 30.02444 * 1 2 3 25 25 H 1.08995 * 109.47052 * 150.02735 * 1 2 3 26 26 H 1.07992 * 125.78683 * 359.97438 * 3 2 1 27 27 H 1.08002 * 126.06960 * 179.83420 * 8 7 6 28 28 H 1.08999 * 109.47223 * 210.00406 * 10 9 8 29 29 H 1.09000 * 109.46989 * 330.00017 * 10 9 8 30 30 H 1.08999 * 109.47569 * 300.00329 * 11 10 9 31 31 H 1.09008 * 109.47094 * 60.00884 * 11 10 9 32 32 H 0.96996 * 120.00080 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3097 1.0861 0.0000 4 7 3.5798 0.6725 0.0057 5 6 3.6076 -0.6437 0.0007 6 6 4.8190 -1.4811 0.0017 7 7 4.8440 -2.7948 -0.0038 8 6 6.1217 -3.1992 0.0030 9 6 6.9024 -2.1019 0.0032 10 6 8.4092 -2.0777 0.0034 11 6 8.9193 -2.0694 -1.4390 12 6 10.4261 -2.0444 -1.4388 13 1 10.9659 -2.0358 -0.5034 14 6 11.1156 -2.0326 -2.6328 15 7 10.4582 -2.0436 -3.7718 16 14 12.9833 -2.0024 -2.6325 17 1 13.4977 -3.2071 -1.9330 18 1 13.4785 -1.9943 -4.0325 19 1 13.4585 -0.7825 -1.9318 20 8 6.0863 -1.0298 0.0019 21 7 2.3195 -1.0994 0.0004 22 1 2.0354 -2.0268 0.0006 23 1 -0.3633 0.0004 1.0277 24 1 -0.3634 0.8897 -0.5142 25 1 -0.3633 -0.8902 -0.5134 26 1 1.9805 2.1146 -0.0004 27 1 6.4645 -4.2234 0.0035 28 1 8.7581 -1.1820 0.5174 29 1 8.7868 -2.9617 0.5172 30 1 8.5704 -2.9650 -1.9530 31 1 8.5418 -1.1852 -1.9528 32 1 10.9432 -2.0349 -4.6118 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259790796.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:49:33 Heat of formation + Delta-G solvation = 64.590528 kcal Electronic energy + Delta-G solvation = -16581.802371 eV Core-core repulsion = 13737.664353 eV Total energy + Delta-G solvation = -2844.138019 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 247.106 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -43.03162 -42.06915 -34.54006 -34.33743 -33.10597 -32.37623 -31.67281 -29.07636 -26.80274 -25.03215 -22.89460 -22.29193 -21.18969 -20.91212 -20.20229 -18.13242 -16.72832 -16.37152 -16.14356 -15.26472 -14.74166 -14.51135 -14.06049 -13.64361 -13.60283 -13.22299 -13.17449 -12.83927 -12.57525 -12.25970 -11.37191 -11.16763 -10.98699 -10.78446 -10.52314 -10.30819 -10.22620 -10.03125 -9.86676 -9.27488 -9.06804 -8.42228 -7.79182 -6.06473 -4.11268 1.05606 2.11355 2.21290 2.70979 3.31029 3.32163 3.35289 3.36389 3.38785 3.76371 4.41029 4.58680 4.76187 5.05207 5.16297 5.19285 5.29315 5.30013 5.42460 5.50710 5.74603 5.88929 6.03194 6.31329 6.42701 6.45161 6.48122 6.75016 7.03815 7.54399 7.61435 7.70454 7.89706 7.94070 8.26696 8.94358 9.53429 11.04592 Molecular weight = 247.11amu Principal moments of inertia in cm(-1) A = 0.049373 B = 0.003828 C = 0.003717 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 566.980650 B = 7313.518818 C = 7530.519236 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C -0.009 4.009 3 C -0.019 4.019 4 N -0.449 5.449 5 C 0.289 3.711 6 C 0.229 3.771 7 N -0.463 5.463 8 C -0.058 4.058 9 C 0.016 3.984 10 C -0.039 4.039 11 C 0.026 3.974 12 C -0.527 4.527 13 H 0.059 0.941 14 C 0.059 3.941 15 N -0.892 5.892 16 Si 0.897 3.103 17 H -0.276 1.276 18 H -0.287 1.287 19 H -0.276 1.276 20 O -0.170 6.170 21 N -0.537 5.537 22 H 0.428 0.572 23 H 0.076 0.924 24 H 0.087 0.913 25 H 0.067 0.933 26 H 0.179 0.821 27 H 0.189 0.811 28 H 0.076 0.924 29 H 0.092 0.908 30 H 0.023 0.977 31 H 0.022 0.978 32 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.412 1.295 8.179 20.188 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.127 4.127 3 C -0.170 4.170 4 N -0.170 5.170 5 C 0.028 3.972 6 C 0.025 3.975 7 N -0.195 5.195 8 C -0.199 4.199 9 C -0.040 4.040 10 C -0.076 4.076 11 C -0.011 4.011 12 C -0.565 4.565 13 H 0.077 0.923 14 C -0.143 4.143 15 N -0.530 5.530 16 Si 0.724 3.276 17 H -0.201 1.201 18 H -0.212 1.212 19 H -0.201 1.201 20 O -0.053 6.053 21 N -0.142 5.142 22 H 0.268 0.732 23 H 0.095 0.905 24 H 0.106 0.894 25 H 0.086 0.914 26 H 0.196 0.804 27 H 0.206 0.794 28 H 0.095 0.905 29 H 0.110 0.890 30 H 0.042 0.958 31 H 0.040 0.960 32 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -18.198 1.536 7.976 19.928 hybrid contribution 0.822 -0.600 -0.216 1.041 sum -17.375 0.936 7.760 19.052 Atomic orbital electron populations 1.20277 0.86309 1.03828 1.03106 1.21488 0.94656 0.86647 1.09900 1.22227 0.87547 0.98996 1.08250 1.70481 1.22680 1.06729 1.17104 1.18361 0.80921 0.88135 1.09736 1.21133 0.82137 0.87090 1.07130 1.70430 1.23769 1.07990 1.17320 1.22970 0.86777 1.00696 1.09458 1.24670 0.95720 0.83688 0.99878 1.20665 0.80144 1.03411 1.03398 1.19161 0.96036 0.98209 0.87663 1.21095 0.90967 1.51837 0.92630 0.92257 1.25023 0.98733 0.94992 0.95541 1.69960 1.35762 1.49925 0.97390 0.86583 0.85247 0.78705 0.77043 1.20122 1.21240 1.20104 1.84567 1.15665 1.36501 1.68598 1.42997 1.05352 1.10102 1.55758 0.73242 0.90498 0.89433 0.91362 0.80410 0.79358 0.90533 0.88964 0.95839 0.96009 0.92732 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.42 10.44 36.01 0.38 -0.04 16 2 C -0.01 -0.09 7.23 -81.55 -0.59 -0.68 16 3 C -0.02 -0.23 11.76 -17.92 -0.21 -0.44 16 4 N -0.45 -7.52 11.28 -11.31 -0.13 -7.64 16 5 C 0.29 4.70 8.08 -154.59 -1.25 3.45 16 6 C 0.23 4.24 8.22 -14.07 -0.12 4.13 16 7 N -0.46 -8.20 11.33 -11.84 -0.13 -8.34 16 8 C -0.06 -1.03 11.79 -17.86 -0.21 -1.24 16 9 C 0.02 0.30 6.64 -35.57 -0.24 0.07 16 10 C -0.04 -0.78 5.70 -27.88 -0.16 -0.94 16 11 C 0.03 0.67 4.96 -27.88 -0.14 0.54 16 12 C -0.53 -14.52 9.11 -34.44 -0.31 -14.83 16 13 H 0.06 1.55 7.74 -52.49 -0.41 1.14 16 14 C 0.06 1.67 5.46 -17.82 -0.10 1.58 16 15 N -0.89 -26.69 13.29 55.43 0.74 -25.95 16 16 Si 0.90 21.32 29.54 -169.99 -5.02 16.30 16 17 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 18 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 19 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 20 O -0.17 -3.50 10.80 3.89 0.04 -3.45 16 21 N -0.54 -6.41 6.22 -6.94 -0.04 -6.45 16 22 H 0.43 4.08 8.96 -40.82 -0.37 3.71 16 23 H 0.08 0.33 8.14 -51.93 -0.42 -0.09 16 24 H 0.09 0.35 8.14 -51.93 -0.42 -0.07 16 25 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 26 H 0.18 1.59 8.06 -52.49 -0.42 1.16 16 27 H 0.19 2.76 8.06 -52.49 -0.42 2.34 16 28 H 0.08 1.50 8.14 -51.93 -0.42 1.08 16 29 H 0.09 1.64 8.14 -51.93 -0.42 1.22 16 30 H 0.02 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.02 0.61 8.14 -51.92 -0.42 0.18 16 32 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 LS Contribution 291.29 15.07 4.39 4.39 Total: -1.00 -33.29 291.29 -6.81 -40.10 By element: Atomic # 1 Polarization: 3.17 SS G_CDS: -3.71 Total: -0.54 kcal Atomic # 6 Polarization: -5.46 SS G_CDS: -2.94 Total: -8.41 kcal Atomic # 7 Polarization: -48.82 SS G_CDS: 0.43 Total: -48.38 kcal Atomic # 8 Polarization: -3.50 SS G_CDS: 0.04 Total: -3.45 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.02 Total: 16.30 kcal Total LS contribution 4.39 Total: 4.39 kcal Total: -33.29 -6.81 -40.10 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259790796.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.692 kcal (2) G-P(sol) polarization free energy of solvation -33.287 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.405 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.814 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.101 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.591 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds